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Items: 1 to 50 of 113

1.

Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells.

Sommer M, Sutter M, Gupta S, Kirst H, Turmo A, Lechno-Yossef S, Burton RL, Saechao C, Sloan NB, Cheng X, Chan LG, Petzold CJ, Fuentes-Cabrera M, Ralston CY, Kerfeld CA.

Plant Physiol. 2018 Nov 2. pii: pp.01190.2018. doi: 10.1104/pp.18.01190. [Epub ahead of print]

2.

In Vitro Assembly of Diverse Bacterial Microcompartment Shell Architectures.

Hagen AR, Plegaria JS, Sloan N, Ferlez B, Aussignargues C, Burton R, Kerfeld CA.

Nano Lett. 2018 Nov 14;18(11):7030-7037. doi: 10.1021/acs.nanolett.8b02991. Epub 2018 Oct 31.

PMID:
30346795
3.

Free-electron laser data for multiple-particle fluctuation scattering analysis.

Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, Hauser G, Hattne J, Hosseinizadeh A, Kassemeyer S, Lomb L, Montero SFC, Menzel A, Rolles D, Rudenko A, Seibert MM, Sierra RG, Schwander P, Ourmazd A, Fromme P, Sauter NK, Bogan M, Bozek J, Bostedt C, Schlichting I, Kerfeld CA, Zwart PH.

Sci Data. 2018 Oct 2;5:180201. doi: 10.1038/sdata.2018.201.

4.

Programmed loading and rapid purification of engineered bacterial microcompartment shells.

Hagen A, Sutter M, Sloan N, Kerfeld CA.

Nat Commun. 2018 Jul 23;9(1):2881. doi: 10.1038/s41467-018-05162-z.

5.

Light-Driven Chloride Transport Kinetics of Halorhodopsin.

Feroz H, Ferlez B, Lefoulon C, Ren T, Baker CS, Gajewski JP, Lugar DJ, Gaudana SB, Butler PJ, Hühn J, Lamping M, Parak WJ, Hibberd JM, Kerfeld CA, Smirnoff N, Blatt MR, Golbeck JH, Kumar M.

Biophys J. 2018 Jul 17;115(2):353-360. doi: 10.1016/j.bpj.2018.06.009.

PMID:
30021110
6.

Structural and functional insights into the unique CBS-CP12 fusion protein family in cyanobacteria.

Hackenberg C, Hakanpää J, Cai F, Antonyuk S, Eigner C, Meissner S, Laitaoja M, Jänis J, Kerfeld CA, Dittmann E, Lamzin VS.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7141-7146. doi: 10.1073/pnas.1806668115. Epub 2018 Jun 18.

7.

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments.

Scott KM, Williams J, Porter CMB, Russel S, Harmer TL, Paul JH, Antonen KM, Bridges MK, Camper GJ, Campla CK, Casella LG, Chase E, Conrad JW, Cruz MC, Dunlap DS, Duran L, Fahsbender EM, Goldsmith DB, Keeley RF, Kondoff MR, Kussy BI, Lane MK, Lawler S, Leigh BA, Lewis C, Lostal LM, Marking D, Mancera PA, McClenthan EC, McIntyre EA, Mine JA, Modi S, Moore BD, Morgan WA, Nelson KM, Nguyen KN, Ogburn N, Parrino DG, Pedapudi AD, Pelham RP, Preece AM, Rampersad EA, Richardson JC, Rodgers CM, Schaffer BL, Sheridan NE, Solone MR, Staley ZR, Tabuchi M, Waide RJ, Wanjugi PW, Young S, Clum A, Daum C, Huntemann M, Ivanova N, Kyrpides N, Mikhailova N, Palaniappan K, Pillay M, Reddy TBK, Shapiro N, Stamatis D, Varghese N, Woyke T, Boden R, Freyermuth SK, Kerfeld CA.

Environ Microbiol. 2018 Aug;20(8):2686-2708. doi: 10.1111/1462-2920.14090. Epub 2018 Apr 6.

PMID:
29521452
8.

Bacterial microcompartments.

Kerfeld CA, Aussignargues C, Zarzycki J, Cai F, Sutter M.

Nat Rev Microbiol. 2018 May;16(5):277-290. doi: 10.1038/nrmicro.2018.10. Epub 2018 Mar 5. Review.

9.

Fluorescence and Excited-State Conformational Dynamics of the Orange Carotenoid Protein.

Gurchiek JK, Bao H, Domínguez-Martín MA, McGovern SE, Marquardt CE, Roscioli JD, Ghosh S, Kerfeld CA, Beck WF.

J Phys Chem B. 2018 Feb 15;122(6):1792-1800. doi: 10.1021/acs.jpcb.7b09435. Epub 2018 Feb 2.

PMID:
29347821
10.

Engineering nanoreactors using bacterial microcompartment architectures.

Plegaria JS, Kerfeld CA.

Curr Opin Biotechnol. 2018 Jun;51:1-7. doi: 10.1016/j.copbio.2017.09.005. Epub 2017 Oct 13. Review.

PMID:
29035760
11.

Structural and Functional Characterization of a Short-Chain Flavodoxin Associated with a Noncanonical 1,2-Propanediol Utilization Bacterial Microcompartment.

Plegaria JS, Sutter M, Ferlez B, Aussignargues C, Niklas J, Poluektov OG, Fromwiller C, TerAvest M, Utschig LM, Tiede DM, Kerfeld CA.

Biochemistry. 2017 Oct 24;56(42):5679-5690. doi: 10.1021/acs.biochem.7b00682. Epub 2017 Oct 10.

PMID:
28956602
12.

Carboxysomes: metabolic modules for CO2 fixation.

Turmo A, Gonzalez-Esquer CR, Kerfeld CA.

FEMS Microbiol Lett. 2017 Oct 2;364(18). doi: 10.1093/femsle/fnx176. Review.

PMID:
28934381
13.

Engineering the Bacterial Microcompartment Domain for Molecular Scaffolding Applications.

Young EJ, Burton R, Mahalik JP, Sumpter BG, Fuentes-Cabrera M, Kerfeld CA, Ducat DC.

Front Microbiol. 2017 Jul 31;8:1441. doi: 10.3389/fmicb.2017.01441. eCollection 2017.

14.

A bioarchitectonic approach to the modular engineering of metabolism.

Kerfeld CA.

Philos Trans R Soc Lond B Biol Sci. 2017 Sep 26;372(1730). pii: 20160387. doi: 10.1098/rstb.2016.0387.

15.

Raman Optical Activity Reveals Carotenoid Photoactivation Events in the Orange Carotenoid Protein in Solution.

Fujisawa T, Leverenz RL, Nagamine M, Kerfeld CA, Unno M.

J Am Chem Soc. 2017 Aug 2;139(30):10456-10460. doi: 10.1021/jacs.7b05193. Epub 2017 Jul 21.

PMID:
28692285
16.

Additional families of orange carotenoid proteins in the photoprotective system of cyanobacteria.

Bao H, Melnicki MR, Pawlowski EG, Sutter M, Agostoni M, Lechno-Yossef S, Cai F, Montgomery BL, Kerfeld CA.

Nat Plants. 2017 Jul 10;3:17089. doi: 10.1038/nplants.2017.89.

PMID:
28692021
17.

Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs.

Kerfeld CA, Melnicki MR, Sutter M, Dominguez-Martin MA.

New Phytol. 2017 Aug;215(3):937-951. doi: 10.1111/nph.14670. Epub 2017 Jul 4. Review.

18.

Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell.

Sutter M, Greber B, Aussignargues C, Kerfeld CA.

Science. 2017 Jun 23;356(6344):1293-1297. doi: 10.1126/science.aan3289.

19.

Synthetic OCP heterodimers are photoactive and recapitulate the fusion of two primitive carotenoproteins in the evolution of cyanobacterial photoprotection.

Lechno-Yossef S, Melnicki MR, Bao H, Montgomery BL, Kerfeld CA.

Plant J. 2017 Aug;91(4):646-656. doi: 10.1111/tpj.13593. Epub 2017 Jun 12.

20.

β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints.

Sommer M, Cai F, Melnicki M, Kerfeld CA.

J Exp Bot. 2017 Jun 1;68(14):3841-3855. doi: 10.1093/jxb/erx115.

21.

Structure and functions of Orange Carotenoid Protein homologs in cyanobacteria.

Bao H, Melnicki MR, Kerfeld CA.

Curr Opin Plant Biol. 2017 Jun;37:1-9. doi: 10.1016/j.pbi.2017.03.010. Epub 2017 Apr 6. Review.

PMID:
28391046
22.

In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment.

Zarzycki J, Sutter M, Cortina NS, Erb TJ, Kerfeld CA.

Sci Rep. 2017 Feb 16;7:42757. doi: 10.1038/srep42757.

23.

David W. Krogmann, 1931-2016.

Brand JJ, Kerfeld CA, Cramer WA, Govindjee.

Photosynth Res. 2017 Apr;132(1):1-12. doi: 10.1007/s11120-016-0335-x. Epub 2017 Feb 2.

PMID:
28155215
24.

Cyanobacterial photoprotection by the orange carotenoid protein.

Kirilovsky D, Kerfeld CA.

Nat Plants. 2016 Dec 2;2(12):16180. doi: 10.1038/nplants.2016.180. Review.

PMID:
27909300
25.

Rewiring Escherichia coli for carbon-dioxide fixation.

Kerfeld CA.

Nat Biotechnol. 2016 Oct 11;34(10):1035-1036. doi: 10.1038/nbt.3693. No abstract available.

PMID:
27727207
26.

Structure, Diversity, and Evolution of a New Family of Soluble Carotenoid-Binding Proteins in Cyanobacteria.

Melnicki MR, Leverenz RL, Sutter M, López-Igual R, Wilson A, Pawlowski EG, Perreau F, Kirilovsky D, Kerfeld CA.

Mol Plant. 2016 Oct 10;9(10):1379-1394. doi: 10.1016/j.molp.2016.06.009. Epub 2016 Jul 5.

27.

Cyanobacterial ultrastructure in light of genomic sequence data.

Gonzalez-Esquer CR, Smarda J, Rippka R, Axen SD, Guglielmi G, Gugger M, Kerfeld CA.

Photosynth Res. 2016 Aug;129(2):147-57. doi: 10.1007/s11120-016-0286-2. Epub 2016 Jun 25. Review.

PMID:
27344651
28.

Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120.

López-Igual R, Wilson A, Leverenz RL, Melnicki MR, Bourcier de Carbon C, Sutter M, Turmo A, Perreau F, Kerfeld CA, Kirilovsky D.

Plant Physiol. 2016 Jul;171(3):1852-66. doi: 10.1104/pp.16.00502. Epub 2016 May 13.

29.

Interrelated modules in cyanobacterial photosynthesis: the carbon-concentrating mechanism, photorespiration, and light perception.

Montgomery BL, Lechno-Yossef S, Kerfeld CA.

J Exp Bot. 2016 May;67(10):2931-40. doi: 10.1093/jxb/erw162. Epub 2016 Apr 25.

PMID:
27117337
30.

Assembly, function and evolution of cyanobacterial carboxysomes.

Kerfeld CA, Melnicki MR.

Curr Opin Plant Biol. 2016 Jun;31:66-75. doi: 10.1016/j.pbi.2016.03.009. Epub 2016 Apr 6. Review.

PMID:
27060669
31.

Bacterial microcompartments as metabolic modules for plant synthetic biology.

Gonzalez-Esquer CR, Newnham SE, Kerfeld CA.

Plant J. 2016 Jul;87(1):66-75. doi: 10.1111/tpj.13166. Epub 2016 Jun 20.

32.

The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle.

Erbilgin O, Sutter M, Kerfeld CA.

PLoS Biol. 2016 Mar 9;14(3):e1002399. doi: 10.1371/journal.pbio.1002399. eCollection 2016 Mar.

33.

Production and Characterization of Synthetic Carboxysome Shells with Incorporated Luminal Proteins.

Cai F, Bernstein SL, Wilson SC, Kerfeld CA.

Plant Physiol. 2016 Mar;170(3):1868-77. doi: 10.1104/pp.15.01822. Epub 2016 Jan 20.

34.

Biochemical characterization of predicted Precambrian RuBisCO.

Shih PM, Occhialini A, Cameron JC, Andralojc PJ, Parry MA, Kerfeld CA.

Nat Commun. 2016 Jan 21;7:10382. doi: 10.1038/ncomms10382.

35.

Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster.

Aussignargues C, Pandelia ME, Sutter M, Plegaria JS, Zarzycki J, Turmo A, Huang J, Ducat DC, Hegg EL, Gibney BR, Kerfeld CA.

J Am Chem Soc. 2016 Apr 27;138(16):5262-70. doi: 10.1021/jacs.5b11734. Epub 2016 Jan 11.

PMID:
26704697
36.

Plug-and-play for improving primary productivity.

Kerfeld CA.

Am J Bot. 2015 Dec;102(12):1949-50. doi: 10.3732/ajb.1500409. Epub 2015 Dec 11. No abstract available.

37.

Visualization of Bacterial Microcompartment Facet Assembly Using High-Speed Atomic Force Microscopy.

Sutter M, Faulkner M, Aussignargues C, Paasch BC, Barrett S, Kerfeld CA, Liu LN.

Nano Lett. 2016 Mar 9;16(3):1590-5. doi: 10.1021/acs.nanolett.5b04259. Epub 2015 Dec 7.

38.

Structural Characterization of a Newly Identified Component of α-Carboxysomes: The AAA+ Domain Protein CsoCbbQ.

Sutter M, Roberts EW, Gonzalez RC, Bates C, Dawoud S, Landry K, Cannon GC, Heinhorst S, Kerfeld CA.

Sci Rep. 2015 Nov 5;5:16243. doi: 10.1038/srep16243.

39.

Bacterial microcompartment assembly: The key role of encapsulation peptides.

Aussignargues C, Paasch BC, Gonzalez-Esquer R, Erbilgin O, Kerfeld CA.

Commun Integr Biol. 2015 Jun 23;8(3):e1039755. doi: 10.1080/19420889.2015.1039755. eCollection 2015 May-Jun.

40.

Bioinformatic characterization of glycyl radical enzyme-associated bacterial microcompartments.

Zarzycki J, Erbilgin O, Kerfeld CA.

Appl Environ Microbiol. 2015 Dec;81(24):8315-29. doi: 10.1128/AEM.02587-15. Epub 2015 Sep 25.

41.

Local and global structural drivers for the photoactivation of the orange carotenoid protein.

Gupta S, Guttman M, Leverenz RL, Zhumadilova K, Pawlowski EG, Petzold CJ, Lee KK, Ralston CY, Kerfeld CA.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):E5567-74. doi: 10.1073/pnas.1512240112. Epub 2015 Sep 18.

42.

Streamlined Construction of the Cyanobacterial CO2-Fixing Organelle via Protein Domain Fusions for Use in Plant Synthetic Biology.

Gonzalez-Esquer CR, Shubitowski TB, Kerfeld CA.

Plant Cell. 2015 Sep;27(9):2637-44. doi: 10.1105/tpc.15.00329. Epub 2015 Aug 28.

43.

PHOTOSYNTHESIS. A 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection.

Leverenz RL, Sutter M, Wilson A, Gupta S, Thurotte A, Bourcier de Carbon C, Petzold CJ, Ralston C, Perreau F, Kirilovsky D, Kerfeld CA.

Science. 2015 Jun 26;348(6242):1463-6. doi: 10.1126/science.aaa7234.

PMID:
26113721
44.

Operational properties of fluctuation X-ray scattering data.

Malmerberg E, Kerfeld CA, Zwart PH.

IUCrJ. 2015 Mar 20;2(Pt 3):309-16. doi: 10.1107/S2052252515002535. eCollection 2015 May 1.

45.

Advances in Understanding Carboxysome Assembly in Prochlorococcus and Synechococcus Implicate CsoS2 as a Critical Component.

Cai F, Dou Z, Bernstein SL, Leverenz R, Williams EB, Heinhorst S, Shively J, Cannon GC, Kerfeld CA.

Life (Basel). 2015 Mar 27;5(2):1141-71. doi: 10.3390/life5021141.

46.

Bacterial microcompartments and the modular construction of microbial metabolism.

Kerfeld CA, Erbilgin O.

Trends Microbiol. 2015 Jan;23(1):22-34. doi: 10.1016/j.tim.2014.10.003. Epub 2014 Nov 14. Review.

PMID:
25455419
47.

Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria.

Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M.

BMC Genomics. 2014 Nov 18;15:977. doi: 10.1186/1471-2164-15-977.

48.

Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria.

Gaudana SB, Zarzycki J, Moparthi VK, Kerfeld CA.

Photosynth Res. 2015 Oct;126(1):99-109. doi: 10.1007/s11120-014-0059-8. Epub 2014 Nov 16. Review.

PMID:
25399051
49.

A taxonomy of bacterial microcompartment loci constructed by a novel scoring method.

Axen SD, Erbilgin O, Kerfeld CA.

PLoS Comput Biol. 2014 Oct 23;10(10):e1003898. doi: 10.1371/journal.pcbi.1003898. eCollection 2014 Oct.

50.

Engineering bacterial microcompartment shells: chimeric shell proteins and chimeric carboxysome shells.

Cai F, Sutter M, Bernstein SL, Kinney JN, Kerfeld CA.

ACS Synth Biol. 2015 Apr 17;4(4):444-53. doi: 10.1021/sb500226j. Epub 2014 Aug 27.

PMID:
25117559

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