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Items: 43

1.

Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops.

Czechowska K, Lannigan J, Wang L, Arcidiacono J, Ashhurst TM, Barnard RM, Bauer S, Bispo C, Bonilla DL, Brinkman RR, Cabanski M, Chang HD, Chakrabarti L, Chojnowski G, Cotleur B, Degheidy H, Dela Cruz GV, Eck S, Elliott J, Errington R, Filby A, Gagnon D, Gardner R, Green C, Gregory M, Groves CJ, Hall C, Hammes F, Hedrick M, Hoffman R, Icha J, Ivaska J, Jenner DC, Jones D, Kerckhof FM, Kukat C, Lanham D, Leavesley S, Lee M, Lin-Gibson S, Litwin V, Liu Y, Molloy J, Moore JS, Müller S, Nedbal J, Niesner R, Nitta N, Ohlsson-Wilhelm B, Paul NE, Perfetto S, Portat Z, Props R, Radtke S, Rayanki R, Rieger A, Rogers S, Rubbens P, Salomon R, Schiemann M, Sharpe J, Sonder SU, Stewart JJ, Sun Y, Ulrich H, Van Isterdael G, Vitaliti A, van Vreden C, Weber M, Zimmermann J, Vacca G, Wallace P, Tárnok A.

Cytometry A. 2019 Jun;95(6):598-644. doi: 10.1002/cyto.a.23777. No abstract available.

PMID:
31207046
2.

Learning Single-Cell Distances from Cytometry Data.

Nguyen B, Rubbens P, Kerckhof FM, Boon N, De Baets B, Waegeman W.

Cytometry A. 2019 May 17. doi: 10.1002/cyto.a.23792. [Epub ahead of print]

PMID:
31099963
3.

Determining stoichiometry and kinetics of two thermophilic nitrifying communities as a crucial step in the development of thermophilic nitrogen removal.

Vandekerckhove TGL, Kerckhof FM, De Mulder C, Vlaeminck SE, Boon N.

Water Res. 2019 Jun 1;156:34-45. doi: 10.1016/j.watres.2019.03.008. Epub 2019 Mar 14.

PMID:
30904709
4.

Oxygen-reducing microbial cathodes monitoring toxic shocks in tap water.

Prévoteau A, Clauwaert P, Kerckhof FM, Rabaey K.

Biosens Bioelectron. 2019 May 1;132:115-121. doi: 10.1016/j.bios.2019.02.037. Epub 2019 Feb 21.

PMID:
30856427
5.

A unified framework for unconstrained and constrained ordination of microbiome read count data.

Hawinkel S, Kerckhof FM, Bijnens L, Thas O.

PLoS One. 2019 Feb 13;14(2):e0205474. doi: 10.1371/journal.pone.0205474. eCollection 2019.

6.

Developing a list of invasive alien species likely to threaten biodiversity and ecosystems in the European Union.

Roy HE, Bacher S, Essl F, Adriaens T, Aldridge DC, Bishop JDD, Blackburn TM, Branquart E, Brodie J, Carboneras C, Cottier-Cook EJ, Copp GH, Dean HJ, Eilenberg J, Gallardo B, Garcia M, García-Berthou E, Genovesi P, Hulme PE, Kenis M, Kerckhof F, Kettunen M, Minchin D, Nentwig W, Nieto A, Pergl J, Pescott OL, M Peyton J, Preda C, Roques A, Rorke SL, Scalera R, Schindler S, Schönrogge K, Sewell J, Solarz W, Stewart AJA, Tricarico E, Vanderhoeven S, van der Velde G, Vilà M, Wood CA, Zenetos A, Rabitsch W.

Glob Chang Biol. 2019 Mar;25(3):1032-1048. doi: 10.1111/gcb.14527. Epub 2018 Dec 12.

PMID:
30548757
7.

Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities.

Scoma A, Heyer R, Rifai R, Dandyk C, Marshall I, Kerckhof FM, Marietou A, Boshker HTS, Meysman FJR, Malmos KG, Vosegaard T, Vermeir P, Banat IM, Benndorf D, Boon N.

ISME J. 2019 Apr;13(4):1004-1018. doi: 10.1038/s41396-018-0324-5. Epub 2018 Dec 12.

PMID:
30542078
8.

Mucin degradation niche as a driver of microbiome composition and Akkermansia muciniphila abundance in a dynamic gut model is donor independent.

Van Herreweghen F, De Paepe K, Roume H, Kerckhof FM, Van de Wiele T.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy186.

PMID:
30239657
9.

Label-free Raman characterization of bacteria calls for standardized procedures.

García-Timermans C, Rubbens P, Kerckhof FM, Buysschaert B, Khalenkow D, Waegeman W, Skirtach AG, Boon N.

J Microbiol Methods. 2018 Aug;151:69-75. doi: 10.1016/j.mimet.2018.05.027. Epub 2018 Jun 14.

PMID:
29909167
10.

Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota.

Chalermwatanachai T, Vilchez-Vargas R, Holtappels G, Lacoere T, Jáuregui R, Kerckhof FM, Pieper DH, Van de Wiele T, Vaneechoutte M, Van Zele T, Bachert C.

Sci Rep. 2018 May 21;8(1):7926. doi: 10.1038/s41598-018-26327-2.

11.

Characterization of spoilage markers in modified atmosphere packaged iceberg lettuce.

Ioannidis AG, Kerckhof FM, Riahi Drif Y, Vanderroost M, Boon N, Ragaert P, De Meulenaer B, Devlieghere F.

Int J Food Microbiol. 2018 Aug 20;279:1-13. doi: 10.1016/j.ijfoodmicro.2018.04.034. Epub 2018 Apr 22.

PMID:
29715602
12.

Pinpointing wastewater and process parameters controlling the AOB to NOB activity ratio in sewage treatment plants.

Seuntjens D, Han M, Kerckhof FM, Boon N, Al-Omari A, Takacs I, Meerburg F, De Mulder C, Wett B, Bott C, Murthy S, Carvajal Arroyo JM, De Clippeleir H, Vlaeminck SE.

Water Res. 2018 Jul 1;138:37-46. doi: 10.1016/j.watres.2017.11.044. Epub 2017 Nov 23.

PMID:
29571087
13.

Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems.

Ehsani E, Hernandez-Sanabria E, Kerckhof FM, Props R, Vilchez-Vargas R, Vital M, Pieper DH, Boon N.

Sci Rep. 2018 Jan 10;8(1):340. doi: 10.1038/s41598-017-18668-1.

14.

Flow cytometric fingerprinting for microbial strain discrimination and physiological characterization.

Buysschaert B, Kerckhof FM, Vandamme P, De Baets B, Boon N.

Cytometry A. 2018 Feb;93(2):201-212. doi: 10.1002/cyto.a.23302. Epub 2017 Dec 20.

15.

Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres.

Kuuliala L, Al Hage Y, Ioannidis AG, Sader M, Kerckhof FM, Vanderroost M, Boon N, De Baets B, De Meulenaer B, Ragaert P, Devlieghere F.

Food Microbiol. 2018 Apr;70:232-244. doi: 10.1016/j.fm.2017.10.011. Epub 2017 Oct 24.

PMID:
29173632
16.

In vitro Increased Respiratory Activity of Selected Oral Bacteria May Explain Competitive and Collaborative Interactions in the Oral Microbiome.

Hernandez-Sanabria E, Slomka V, Herrero ER, Kerckhof FM, Zaidel L, Teughels W, Boon N.

Front Cell Infect Microbiol. 2017 Jun 7;7:235. doi: 10.3389/fcimb.2017.00235. eCollection 2017.

17.

Inter-individual differences determine the outcome of wheat bran colonization by the human gut microbiome.

De Paepe K, Kerckhof FM, Verspreet J, Courtin CM, Van de Wiele T.

Environ Microbiol. 2017 Aug;19(8):3251-3267. doi: 10.1111/1462-2920.13819. Epub 2017 Jul 21.

PMID:
28618173
18.

Reconciliation between operational taxonomic units and species boundaries.

Mysara M, Vandamme P, Props R, Kerckhof FM, Leys N, Boon N, Raes J, Monsieurs P.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix029.

19.

Efficient molasses fermentation under high salinity by inocula of marine and terrestrial origin.

Scoma A, Coma M, Kerckhof FM, Boon N, Rabaey K.

Biotechnol Biofuels. 2017 Jan 31;10:23. doi: 10.1186/s13068-017-0701-8. eCollection 2017.

20.

Community structure, population dynamics and diversity of fungi in a full-scale membrane bioreactor (MBR) for urban wastewater treatment.

Maza-Márquez P, Vilchez-Vargas R, Kerckhof FM, Aranda E, González-López J, Rodelas B.

Water Res. 2016 Nov 15;105:507-519. doi: 10.1016/j.watres.2016.09.021. Epub 2016 Sep 15.

PMID:
27668995
21.

Absolute quantification of microbial taxon abundances.

Props R, Kerckhof FM, Rubbens P, De Vrieze J, Hernandez Sanabria E, Waegeman W, Monsieurs P, Hammes F, Boon N.

ISME J. 2017 Feb;11(2):584-587. doi: 10.1038/ismej.2016.117. Epub 2016 Sep 9.

22.

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

Ho A, Angel R, Veraart AJ, Daebeler A, Jia Z, Kim SY, Kerckhof FM, Boon N, Bodelier PL.

Front Microbiol. 2016 Aug 23;7:1285. doi: 10.3389/fmicb.2016.01285. eCollection 2016. Review.

23.

New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase.

Vekeman B, Kerckhof FM, Cremers G, de Vos P, Vandamme P, Boon N, Op den Camp HJ, Heylen K.

Environ Microbiol. 2016 Dec;18(12):4523-4536. doi: 10.1111/1462-2920.13485. Epub 2016 Sep 9.

PMID:
27501305
24.

Bacterial Exchange in Household Washing Machines.

Callewaert C, Van Nevel S, Kerckhof FM, Granitsiotis MS, Boon N.

Front Microbiol. 2015 Dec 8;6:1381. doi: 10.3389/fmicb.2015.01381. eCollection 2015.

25.

Bacillus cereus Adhesion to Simulated Intestinal Mucus Is Determined by Its Growth on Mucin, Rather Than Intestinal Environmental Parameters.

Tsilia V, Uyttendaele M, Kerckhof FM, Rajkovic A, Heyndrickx M, Van de Wiele T.

Foodborne Pathog Dis. 2015 Nov;12(11):904-13. doi: 10.1089/fpd.2014.1926.

PMID:
26545170
26.

Bacillus cereus NVH 0500/00 Can Adhere to Mucin but Cannot Produce Enterotoxins during Gastrointestinal Simulation.

Tsilia V, Kerckhof FM, Rajkovic A, Heyndrickx M, Van de Wiele T.

Appl Environ Microbiol. 2015 Oct 23;82(1):289-96. doi: 10.1128/AEM.02940-15. Print 2016 Jan 1.

27.

Chronic cigarette smoke exposure induces microbial and inflammatory shifts and mucin changes in the murine gut.

Allais L, Kerckhof FM, Verschuere S, Bracke KR, De Smet R, Laukens D, Van den Abbeele P, De Vos M, Boon N, Brusselle GG, Cuvelier CA, Van de Wiele T.

Environ Microbiol. 2016 May;18(5):1352-63. doi: 10.1111/1462-2920.12934. Epub 2015 Jul 22.

PMID:
26033517
28.

Exploring methane-oxidizing communities for the co-metabolic degradation of organic micropollutants.

Benner J, De Smet D, Ho A, Kerckhof FM, Vanhaecke L, Heylen K, Boon N.

Appl Microbiol Biotechnol. 2015 Apr;99(8):3609-18. doi: 10.1007/s00253-014-6226-1. Epub 2014 Dec 7.

PMID:
25487887
29.

Microbial odor profile of polyester and cotton clothes after a fitness session.

Callewaert C, De Maeseneire E, Kerckhof FM, Verliefde A, Van de Wiele T, Boon N.

Appl Environ Microbiol. 2014 Nov;80(21):6611-9. doi: 10.1128/AEM.01422-14. Epub 2014 Aug 15.

30.

Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity.

Kerckhof FM, Courtens EN, Geirnaert A, Hoefman S, Ho A, Vilchez-Vargas R, Pieper DH, Jauregui R, Vlaeminck SE, Van de Wiele T, Vandamme P, Heylen K, Boon N.

PLoS One. 2014 Jun 17;9(6):e99517. doi: 10.1371/journal.pone.0099517. eCollection 2014.

31.

Development of an oral mucosa model to study host-microbiome interactions during wound healing.

De Ryck T, Grootaert C, Jaspaert L, Kerckhof FM, Van Gele M, De Schrijver J, Van den Abbeele P, Swift S, Bracke M, Van de Wiele T, Vanhoecke B.

Appl Microbiol Biotechnol. 2014 Aug;98(15):6831-46. doi: 10.1007/s00253-014-5841-1. Epub 2014 Jun 11.

PMID:
24917376
32.

Exploration and prediction of interactions between methanotrophs and heterotrophs.

Stock M, Hoefman S, Kerckhof FM, Boon N, De Vos P, De Baets B, Heylen K, Waegeman W.

Res Microbiol. 2013 Dec;164(10):1045-54. doi: 10.1016/j.resmic.2013.08.006. Epub 2013 Sep 4.

PMID:
24012541
33.

Characterization of Staphylococcus and Corynebacterium clusters in the human axillary region.

Callewaert C, Kerckhof FM, Granitsiotis MS, Van Gele M, Van de Wiele T, Boon N.

PLoS One. 2013 Aug 12;8(8):e70538. doi: 10.1371/journal.pone.0070538. eCollection 2013.

34.

A kernel-based model to predict interaction between methanotrophic and heterotrophic bacteria.

Stock M, Hoefman S, Kerckhof FM, Boon N, De Vos P, Heylen K, De Baets B, Waegeman W.

Commun Agric Appl Biol Sci. 2013;78(1):55-60. No abstract available.

PMID:
23875298
35.

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies.

Ho A, Kerckhof FM, Luke C, Reim A, Krause S, Boon N, Bodelier PL.

Environ Microbiol Rep. 2013 Jun;5(3):335-45. doi: 10.1111/j.1758-2229.2012.00370.x. Epub 2012 Aug 13. Review.

PMID:
23754714
36.

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.

Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, De Weirdt R, Kerckhof FM, Van de Wiele T.

ISME J. 2013 May;7(5):949-61. doi: 10.1038/ismej.2012.158. Epub 2012 Dec 13.

37.

Conversion of biogas to bioproducts by algae and methane oxidizing bacteria.

van der Ha D, Nachtergaele L, Kerckhof FM, Rameiyanti D, Bossier P, Verstraete W, Boon N.

Environ Sci Technol. 2012 Dec 18;46(24):13425-31. doi: 10.1021/es303929s. Epub 2012 Dec 6.

PMID:
23186036
38.

Barcoded pyrosequencing analysis of the microbial community in a simulator of the human gastrointestinal tract showed a colon region-specific microbiota modulation for two plant-derived polysaccharide blends.

Marzorati M, Maignien L, Verhelst A, Luta G, Sinnott R, Kerckhof FM, Boon N, Van de Wiele T, Possemiers S.

Antonie Van Leeuwenhoek. 2013 Feb;103(2):409-20. doi: 10.1007/s10482-012-9821-0. Epub 2012 Oct 5.

PMID:
23053695
39.

Strain-specific transfer of antibiotic resistance from an environmental plasmid to foodborne pathogens.

Van Meervenne E, Van Coillie E, Kerckhof FM, Devlieghere F, Herman L, De Gelder LS, Top EM, Boon N.

J Biomed Biotechnol. 2012;2012:834598. doi: 10.1155/2012/834598. Epub 2012 Jun 27.

40.

Selecting nitrifying inocula on different ammonium concentrations.

Zekker I, Vlaeminck SE, Bagchi S, Courtens E, De Clippeleir H, Kerckhof FM, Boon N.

Commun Agric Appl Biol Sci. 2012;77(1):275-9. No abstract available.

PMID:
22558795
41.

The bacterial fingerprint of the armpit and its variation in time.

Callewaert C, Kerckhof FM, Granitsiotis M, Van de Wiele T, Boon N.

Commun Agric Appl Biol Sci. 2012;77(1):171-5. No abstract available.

PMID:
22558776
42.

Brucella ceti infection in harbor porpoise (Phocoena phocoena).

Jauniaux TP, Brenez C, Fretin D, Godfroid J, Haelters J, Jacques T, Kerckhof F, Mast J, Sarlet M, Coignoul FL.

Emerg Infect Dis. 2010 Dec;16(12):1966-8. doi: 10.3201/eid1612.101008.

43.

The use of benthic indicators in Europe: from the Water Framework Directive to the Marine Strategy Framework Directive.

Van Hoey G, Borja A, Birchenough S, Buhl-Mortensen L, Degraer S, Fleischer D, Kerckhof F, Magni P, Muxika I, Reiss H, Schröder A, Zettler ML.

Mar Pollut Bull. 2010 Dec;60(12):2187-96. doi: 10.1016/j.marpolbul.2010.09.015. Epub 2010 Nov 3.

PMID:
21051051

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