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Items: 18

1.

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies.

Frau A, Kenny JG, Lenzi L, Campbell BJ, Ijaz UZ, Duckworth CA, Burkitt MD, Hall N, Anson J, Darby AC, Probert CSJ.

Sci Rep. 2019 Jun 27;9(1):9328. doi: 10.1038/s41598-019-44974-x.

2.

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems.

George PBL, Lallias D, Creer S, Seaton FM, Kenny JG, Eccles RM, Griffiths RI, Lebron I, Emmett BA, Robinson DA, Jones DL.

Nat Commun. 2019 Mar 7;10(1):1107. doi: 10.1038/s41467-019-09031-1.

3.

A Framework for Multi-Omic Prediction of Treatment Response to Biologic Therapy for Psoriasis.

Foulkes AC, Watson DS, Carr DF, Kenny JG, Slidel T, Parslew R, Pirmohamed M; PSORT Consortium, Anders S, Reynolds NJ, Griffiths CEM, Warren RB, Barnes MR.

J Invest Dermatol. 2019 Jan;139(1):100-107. doi: 10.1016/j.jid.2018.04.041. Epub 2018 Jul 17.

4.

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline.

Denman S, Doonan J, Ransom-Jones E, Broberg M, Plummer S, Kirk S, Scarlett K, Griffiths AR, Kaczmarek M, Forster J, Peace A, Golyshin PN, Hassard F, Brown N, Kenny JG, McDonald JE.

ISME J. 2018 Feb;12(2):386-399. doi: 10.1038/ismej.2017.170. Epub 2017 Oct 13.

5.

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms.

D'Amore R, Johnson J, Haldenby S, Hall N, Hughes M, Joynson R, Kenny JG, Patron N, Hertz-Fowler C, Hall A.

Biotechniques. 2017 Jul 1;63(1):13-20. doi: 10.2144/000114565.

6.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.

D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N.

BMC Genomics. 2016 Jan 14;17:55. doi: 10.1186/s12864-015-2194-9.

7.

Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli.

Veses-Garcia M, Liu X, Rigden DJ, Kenny JG, McCarthy AJ, Allison HE.

Appl Environ Microbiol. 2015 Dec;81(23):8118-25. doi: 10.1128/AEM.02034-15. Epub 2015 Sep 18.

8.

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa.

Carroll MW, Matthews DA, Hiscox JA, Elmore MJ, Pollakis G, Rambaut A, Hewson R, García-Dorival I, Bore JA, Koundouno R, Abdellati S, Afrough B, Aiyepada J, Akhilomen P, Asogun D, Atkinson B, Badusche M, Bah A, Bate S, Baumann J, Becker D, Becker-Ziaja B, Bocquin A, Borremans B, Bosworth A, Boettcher JP, Cannas A, Carletti F, Castilletti C, Clark S, Colavita F, Diederich S, Donatus A, Duraffour S, Ehichioya D, Ellerbrok H, Fernandez-Garcia MD, Fizet A, Fleischmann E, Gryseels S, Hermelink A, Hinzmann J, Hopf-Guevara U, Ighodalo Y, Jameson L, Kelterbaum A, Kis Z, Kloth S, Kohl C, Korva M, Kraus A, Kuisma E, Kurth A, Liedigk B, Logue CH, Lüdtke A, Maes P, McCowen J, Mély S, Mertens M, Meschi S, Meyer B, Michel J, Molkenthin P, Muñoz-Fontela C, Muth D, Newman EN, Ngabo D, Oestereich L, Okosun J, Olokor T, Omiunu R, Omomoh E, Pallasch E, Pályi B, Portmann J, Pottage T, Pratt C, Priesnitz S, Quartu S, Rappe J, Repits J, Richter M, Rudolf M, Sachse A, Schmidt KM, Schudt G, Strecker T, Thom R, Thomas S, Tobin E, Tolley H, Trautner J, Vermoesen T, Vitoriano I, Wagner M, Wolff S, Yue C, Capobianchi MR, Kretschmer B, Hall Y, Kenny JG, Rickett NY, Dudas G, Coltart CE, Kerber R, Steer D, Wright C, Senyah F, Keita S, Drury P, Diallo B, de Clerck H, Van Herp M, Sprecher A, Traore A, Diakite M, Konde MK, Koivogui L, Magassouba N, Avšič-Županc T, Nitsche A, Strasser M, Ippolito G, Becker S, Stoecker K, Gabriel M, Raoul H, Di Caro A, Wölfel R, Formenty P, Günther S.

Nature. 2015 Aug 6;524(7563):97-101. doi: 10.1038/nature14594. Epub 2015 Jun 17.

PMID:
26083749
9.

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

Smith G, Smith C, Kenny JG, Chaudhuri RR, Ritchie MG.

Mol Biol Evol. 2015 Apr;32(4):888-95. doi: 10.1093/molbev/msu344. Epub 2014 Dec 21.

PMID:
25534027
10.

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

Moura AE, Kenny JG, Chaudhuri R, Hughes MA, J Welch A, Reisinger RR, de Bruyn PJ, Dahlheim ME, Hall N, Hoelzel AR.

Mol Ecol. 2014 Nov;23(21):5179-92. doi: 10.1111/mec.12929. Epub 2014 Oct 12.

11.

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

Moura AE, Kenny JG, Chaudhuri RR, Hughes MA, Reisinger RR, de Bruyn PJ, Dahlheim ME, Hall N, Hoelzel AR.

Heredity (Edinb). 2015 Jan;114(1):48-55. doi: 10.1038/hdy.2014.67. Epub 2014 Jul 23.

12.

Mannitol utilisation is required for protection of Staphylococcus aureus from human skin antimicrobial fatty acids.

Kenny JG, Moran J, Kolar SL, Ulanov A, Li Z, Shaw LN, Josefsson E, Horsburgh MJ.

PLoS One. 2013 Jul 4;8(7):e67698. doi: 10.1371/journal.pone.0067698. Print 2013.

13.

Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages.

Yasmin A, Kenny JG, Shankar J, Darby AC, Hall N, Edwards C, Horsburgh MJ.

J Bacteriol. 2010 Feb;192(4):1122-30. doi: 10.1128/JB.01293-09. Epub 2009 Dec 11.

14.

The Staphylococcus aureus response to unsaturated long chain free fatty acids: survival mechanisms and virulence implications.

Kenny JG, Ward D, Josefsson E, Jonsson IM, Hinds J, Rees HH, Lindsay JA, Tarkowski A, Horsburgh MJ.

PLoS One. 2009;4(2):e4344. doi: 10.1371/journal.pone.0004344. Epub 2009 Feb 2.

15.

Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009.

Kenny JG, Leach S, de la Hoz AB, Venema G, Kok J, Fitzgerald GF, Nauta A, Alonso JC, van Sinderen D.

Virology. 2006 Apr 10;347(2):434-46. Epub 2006 Jan 10.

16.

The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003.

Ventura M, Zhang Z, Cronin M, Canchaya C, Kenny JG, Fitzgerald GF, van Sinderen D.

J Bacteriol. 2005 Dec;187(24):8411-26.

17.

The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction.

Ventura M, Kenny JG, Zhang Z, Fitzgerald GF, van Sinderen D.

Microbiology. 2005 Sep;151(Pt 9):2861-2872. doi: 10.1099/mic.0.28176-0.

PMID:
16151199
18.

Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity.

Kenny JG, McGrath S, Fitzgerald GF, van Sinderen D.

J Bacteriol. 2004 Jun;186(11):3480-91.

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