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Items: 46

1.

Shared mycorrhizae but distinct communities of other root-associated microbes on co-occurring native and invasive maples.

DeBellis T, Kembel SW, Lessard JP.

PeerJ. 2019 Jul 30;7:e7295. doi: 10.7717/peerj.7295. eCollection 2019.

2.

Making the Most of Trait-Based Approaches for Microbial Ecology.

Lajoie G, Kembel SW.

Trends Microbiol. 2019 Oct;27(10):814-823. doi: 10.1016/j.tim.2019.06.003. Epub 2019 Jul 8. Review.

PMID:
31296406
3.

The prevalence of nonlinearity and detection of ecological breakpoints across a land use gradient in streams.

D'Amario SC, Rearick DC, Fasching C, Kembel SW, Porter-Goff E, Spooner DE, Williams CJ, Wilson HF, Xenopoulos MA.

Sci Rep. 2019 Mar 7;9(1):3878. doi: 10.1038/s41598-019-40349-4.

4.

Gut microbiota-mediated Gene-Environment interaction in the TashT mouse model of Hirschsprung disease.

Touré AM, Landry M, Souchkova O, Kembel SW, Pilon N.

Sci Rep. 2019 Jan 24;9(1):492. doi: 10.1038/s41598-018-36967-z.

5.

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly.

Martínez I, Maldonado-Gomez MX, Gomes-Neto JC, Kittana H, Ding H, Schmaltz R, Joglekar P, Cardona RJ, Marsteller NL, Kembel SW, Benson AK, Peterson DA, Ramer-Tait AE, Walter J.

Elife. 2018 Sep 18;7. pii: e36521. doi: 10.7554/eLife.36521.

6.

Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota.

Gaulke CA, Arnold HK, Humphreys IR, Kembel SW, O'Dwyer JP, Sharpton TJ.

MBio. 2018 Sep 11;9(5). pii: e01348-18. doi: 10.1128/mBio.01348-18.

7.

Variation in the leaf and root microbiome of sugar maple (Acer saccharum) at an elevational range limit.

Wallace J, Laforest-Lapointe I, Kembel SW.

PeerJ. 2018 Aug 14;6:e5293. doi: 10.7717/peerj.5293. eCollection 2018.

8.

Soils associated to different tree communities do not elicit predictable responses in lake bacterial community structure and function.

Ruiz-González C, Archambault E, Laforest-Lapointe I, Del Giorgio PA, Kembel SW, Messier C, Nock CA, Beisner BE.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy115.

PMID:
29912326
9.

Tree Leaf Bacterial Community Structure and Diversity Differ along a Gradient of Urban Intensity.

Laforest-Lapointe I, Messier C, Kembel SW.

mSystems. 2017 Dec 5;2(6). pii: e00087-17. doi: 10.1128/mSystems.00087-17. eCollection 2017 Nov-Dec.

10.

Identifying the core seed bank of a complex boreal bacterial metacommunity.

Ruiz-González C, Niño-García JP, Kembel SW, Del Giorgio PA.

ISME J. 2017 Sep;11(9):2012-2021. doi: 10.1038/ismej.2017.67. Epub 2017 Jun 6.

11.

Leaf bacterial diversity mediates plant diversity and ecosystem function relationships.

Laforest-Lapointe I, Paquette A, Messier C, Kembel SW.

Nature. 2017 Jun 1;546(7656):145-147. doi: 10.1038/nature22399. Epub 2017 May 24.

PMID:
28538736
12.

Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species.

Laforest-Lapointe I, Messier C, Kembel SW.

PeerJ. 2016 Aug 24;4:e2367. doi: 10.7717/peerj.2367. eCollection 2016.

13.

Phylogenetic turnover along local environmental gradients in tropical forest communities.

Baldeck CA, Kembel SW, Harms KE, Yavitt JB, John R, Turner BL, Madawala S, Gunatilleke N, Gunatilleke S, Bunyavejchewin S, Kiratiprayoon S, Yaacob A, Supardi MN, Valencia R, Navarrete H, Davies SJ, Chuyong GB, Kenfack D, Thomas DW, Dalling JW.

Oecologia. 2016 Oct;182(2):547-57. doi: 10.1007/s00442-016-3686-2. Epub 2016 Jun 23.

PMID:
27337965
14.

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure.

Laforest-Lapointe I, Messier C, Kembel SW.

Microbiome. 2016 Jun 18;4(1):27. doi: 10.1186/s40168-016-0174-1.

15.

A global meta-analysis of the relative extent of intraspecific trait variation in plant communities.

Siefert A, Violle C, Chalmandrier L, Albert CH, Taudiere A, Fajardo A, Aarssen LW, Baraloto C, Carlucci MB, Cianciaruso MV, de L Dantas V, de Bello F, Duarte LD, Fonseca CR, Freschet GT, Gaucherand S, Gross N, Hikosaka K, Jackson B, Jung V, Kamiyama C, Katabuchi M, Kembel SW, Kichenin E, Kraft NJ, Lagerström A, Bagousse-Pinguet YL, Li Y, Mason N, Messier J, Nakashizuka T, Overton JM, Peltzer DA, Pérez-Ramos IM, Pillar VD, Prentice HC, Richardson S, Sasaki T, Schamp BS, Schöb C, Shipley B, Sundqvist M, Sykes MT, Vandewalle M, Wardle DA.

Ecol Lett. 2015 Dec;18(12):1406-19. doi: 10.1111/ele.12508. Epub 2015 Sep 28. Review.

PMID:
26415616
16.

Backbones of evolutionary history test biodiversity theory for microbes.

O'Dwyer JP, Kembel SW, Sharpton TJ.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8356-61. doi: 10.1073/pnas.1419341112. Epub 2015 Jun 23. Erratum in: Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):E6589.

17.

The Biogeography of Putative Microbial Antibiotic Production.

Morlon H, O'Connor TK, Bryant JA, Charkoudian LK, Docherty KM, Jones E, Kembel SW, Green JL, Bohannan BJ.

PLoS One. 2015 Jun 23;10(6):e0130659. doi: 10.1371/journal.pone.0130659. eCollection 2015.

18.

Evolution of the indoor biome.

NESCent Working Group on the Evolutionary Biology of the Built Environment, Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, Mhuireach G, Moreau CS, Munshi-South J, Nichols LM, Palmer C, Popova L, Schal C, Täubel M, Trautwein M, Ugalde JA, Dunn RR.

Trends Ecol Evol. 2015 Apr;30(4):223-32. doi: 10.1016/j.tree.2015.02.001. Epub 2015 Mar 11. Review.

PMID:
25770744
19.

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest.

Kembel SW, O'Connor TK, Arnold HK, Hubbell SP, Wright SJ, Green JL.

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13715-20. doi: 10.1073/pnas.1216057111. Epub 2014 Sep 15.

20.

Drawing ecological inferences from coincident patterns of population- and community-level biodiversity.

Vellend M, Lajoie G, Bourret A, Múrria C, Kembel SW, Garant D.

Mol Ecol. 2014 Jun;23(12):2890-901. doi: 10.1111/mec.12756. Epub 2014 May 25. Review.

PMID:
24750409
21.

Bacterial communities on classroom surfaces vary with human contact.

Meadow JF, Altrichter AE, Kembel SW, Moriyama M, O'Connor TK, Womack AM, Brown GZ, Green JL, Bohannan BJ.

Microbiome. 2014 Mar 7;2(1):7. doi: 10.1186/2049-2618-2-7.

22.

Architectural design drives the biogeography of indoor bacterial communities.

Kembel SW, Meadow JF, O'Connor TK, Mhuireach G, Northcutt D, Kline J, Moriyama M, Brown GZ, Bohannan BJ, Green JL.

PLoS One. 2014 Jan 29;9(1):e87093. doi: 10.1371/journal.pone.0087093. eCollection 2014.

23.

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead.

Joly S, Davies TJ, Archambault A, Bruneau A, Derry A, Kembel SW, Peres-Neto P, Vamosi J, Wheeler TA.

Mol Ecol Resour. 2014 Mar;14(2):221-32. doi: 10.1111/1755-0998.12173. Epub 2013 Oct 21.

PMID:
24118947
24.

A taxonomic comparison of local habitat niches of tropical trees.

Baldeck CA, Kembel SW, Harms KE, Yavitt JB, John R, Turner BL, Chuyong GB, Kenfack D, Thomas DW, Madawala S, Gunatilleke N, Gunatilleke S, Bunyavejchewin S, Kiratiprayoon S, Yaacob A, Nur Supardi MN, Valencia R, Navarrete H, Davies SJ, Hubbell SP, Dalling JW.

Oecologia. 2013 Dec;173(4):1491-8. doi: 10.1007/s00442-013-2709-5. Epub 2013 Jul 13.

PMID:
23851985
25.

Indoor airborne bacterial communities are influenced by ventilation, occupancy, and outdoor air source.

Meadow JF, Altrichter AE, Kembel SW, Kline J, Mhuireach G, Moriyama M, Northcutt D, O'Connor TK, Womack AM, Brown GZ, Green JL, Bohannan BJ.

Indoor Air. 2014 Feb;24(1):41-8. doi: 10.1111/ina.12047. Epub 2013 May 24.

26.

Global marine bacterial diversity peaks at high latitudes in winter.

Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS.

ISME J. 2013 Sep;7(9):1669-77. doi: 10.1038/ismej.2013.37. Epub 2013 Mar 21. Erratum in: ISME J.2013 Sep;7(9)1876.

27.

Phylogenetic diversity theory sheds light on the structure of microbial communities.

O'Dwyer JP, Kembel SW, Green JL.

PLoS Comput Biol. 2012;8(12):e1002832. doi: 10.1371/journal.pcbi.1002832. Epub 2012 Dec 20.

28.

Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.

Kembel SW, Wu M, Eisen JA, Green JL.

PLoS Comput Biol. 2012;8(10):e1002743. doi: 10.1371/journal.pcbi.1002743. Epub 2012 Oct 25.

29.

Architectural design influences the diversity and structure of the built environment microbiome.

Kembel SW, Jones E, Kline J, Northcutt D, Stenson J, Womack AM, Bohannan BJ, Brown GZ, Green JL.

ISME J. 2012 Aug;6(8):1469-79. doi: 10.1038/ismej.2011.211. Epub 2012 Jan 26.

30.

Flowering phenology as a functional trait in a tallgrass prairie.

Craine JM, Wolkovich EM, Gene Towne E, Kembel SW.

New Phytol. 2012 Feb;193(3):673-82. doi: 10.1111/j.1469-8137.2011.03953.x. Epub 2011 Nov 10.

31.

The phylogenetic diversity of metagenomes.

Kembel SW, Eisen JA, Pollard KS, Green JL.

PLoS One. 2011;6(8):e23214. doi: 10.1371/journal.pone.0023214. Epub 2011 Aug 31.

32.

Independent evolution of leaf and root traits within and among temperate grassland plant communities.

Kembel SW, Cahill JF Jr.

PLoS One. 2011;6(6):e19992. doi: 10.1371/journal.pone.0019992. Epub 2011 Jun 8.

33.

Effect of local community phylogenetic structure on pollen limitation in an obligately insect-pollinated plant.

Sargent RD, Kembel SW, Emery NC, Forrestel EJ, Ackerly DD.

Am J Bot. 2011 Feb;98(2):283-9. doi: 10.3732/ajb.1000329. Epub 2011 Jan 25.

34.

Functional consequences of climate change-induced plant species loss in a tallgrass prairie.

Craine JM, Nippert JB, Towne EG, Tucker S, Kembel SW, Skibbe A, McLauchlan KK.

Oecologia. 2011 Apr;165(4):1109-17. doi: 10.1007/s00442-011-1938-8. Epub 2011 Feb 17.

PMID:
21328008
35.

PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.

Sharpton TJ, Riesenfeld SJ, Kembel SW, Ladau J, O'Dwyer JP, Green JL, Eisen JA, Pollard KS.

PLoS Comput Biol. 2011 Jan 20;7(1):e1001061. doi: 10.1371/journal.pcbi.1001061.

36.

Paleotemperature proxies from leaf fossils reinterpreted in light of evolutionary history.

Little SA, Kembel SW, Wilf P.

PLoS One. 2010 Dec 22;5(12):e15161. doi: 10.1371/journal.pone.0015161.

37.

Picante: R tools for integrating phylogenies and ecology.

Kembel SW, Cowan PD, Helmus MR, Cornwell WK, Morlon H, Ackerly DD, Blomberg SP, Webb CO.

Bioinformatics. 2010 Jun 1;26(11):1463-4. doi: 10.1093/bioinformatics/btq166. Epub 2010 Apr 15.

PMID:
20395285
38.

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa.

Klepac-Ceraj V, Lemon KP, Martin TR, Allgaier M, Kembel SW, Knapp AA, Lory S, Brodie EL, Lynch SV, Bohannan BJ, Green JL, Maurer BA, Kolter R.

Environ Microbiol. 2010 May;12(5):1293-303. doi: 10.1111/j.1462-2920.2010.02173.x. Epub 2010 Feb 23.

PMID:
20192960
39.

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history.

Cadotte MW, Jonathan Davies T, Regetz J, Kembel SW, Cleland E, Oakley TH.

Ecol Lett. 2010 Jan;13(1):96-105. doi: 10.1111/j.1461-0248.2009.01405.x. Epub 2009 Nov 9.

PMID:
19903196
40.
41.

In situ phylogenetic structure and diversity of wild Bradyrhizobium communities.

Sachs JL, Kembel SW, Lau AH, Simms EL.

Appl Environ Microbiol. 2009 Jul;75(14):4727-35. doi: 10.1128/AEM.00667-09. Epub 2009 May 29.

42.

The merging of community ecology and phylogenetic biology.

Cavender-Bares J, Kozak KH, Fine PV, Kembel SW.

Ecol Lett. 2009 Jul;12(7):693-715. doi: 10.1111/j.1461-0248.2009.01314.x. Epub 2009 May 18. Review.

PMID:
19473217
43.

Phylocom: software for the analysis of phylogenetic community structure and trait evolution.

Webb CO, Ackerly DD, Kembel SW.

Bioinformatics. 2008 Sep 15;24(18):2098-100. doi: 10.1093/bioinformatics/btn358. Epub 2008 Aug 4.

PMID:
18678590
44.

Improving the scale and precision of hypotheses to explain root foraging ability.

Kembel SW, De Kroon H, Cahill JF Jr, Mommer L.

Ann Bot. 2008 Jun;101(9):1295-301. doi: 10.1093/aob/mcn044. Epub 2008 Apr 19.

45.

The phylogenetic structure of a neotropical forest tree community.

Kembel SW, Hubbell SP.

Ecology. 2006 Jul;87(7 Suppl):S86-99.

PMID:
16922305
46.

Plant phenotypic plasticity belowground: a phylogenetic perspective on root foraging trade-offs.

Kembel SW, Cahill JF Jr.

Am Nat. 2005 Aug;166(2):216-30. Epub 2005 May 26.

PMID:
16032575

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