Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 115

1.

Comparative genomics of rumen Butyrivibrio uncovers a continuum of polysaccharide-degrading capabilities.

Palevich N, Kelly WJ, Leahy SC, Denman S, Altermann E, Rakonjac J, Attwood GT.

Appl Environ Microbiol. 2019 Oct 25. pii: AEM.01993-19. doi: 10.1128/AEM.01993-19. [Epub ahead of print]

2.

Use of Lactic Acid Bacteria to Reduce Methane Production in Ruminants, a Critical Review.

Doyle N, Mbandlwa P, Kelly WJ, Attwood G, Li Y, Ross RP, Stanton C, Leahy S.

Front Microbiol. 2019 Oct 1;10:2207. doi: 10.3389/fmicb.2019.02207. eCollection 2019. Review.

3.

Diverse hydrogen production and consumption pathways influence methane production in ruminants.

Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI.

ISME J. 2019 Oct;13(10):2617-2632. doi: 10.1038/s41396-019-0464-2. Epub 2019 Jun 26.

4.

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework.

Henderson G, Yilmaz P, Kumar S, Forster RJ, Kelly WJ, Leahy SC, Guan LL, Janssen PH.

PeerJ. 2019 Mar 5;7:e6496. doi: 10.7717/peerj.6496. eCollection 2019.

5.

Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity.

Wels M, Siezen R, van Hijum S, Kelly WJ, Bachmann H.

Front Microbiol. 2019 Jan 31;10:4. doi: 10.3389/fmicb.2019.00004. eCollection 2019.

6.

Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon.

Kim CC, Healey GR, Kelly WJ, Patchett ML, Jordens Z, Tannock GW, Sims IM, Bell TJ, Hedderley D, Henrissat B, Rosendale DI.

ISME J. 2019 Jun;13(6):1437-1456. doi: 10.1038/s41396-019-0363-6. Epub 2019 Feb 6.

PMID:
30728469
7.

Butyrivibrio hungatei MB2003 Competes Effectively for Soluble Sugars Released by Butyrivibrio proteoclasticus B316T during Growth on Xylan or Pectin.

Palevich N, Kelly WJ, Ganesh S, Rakonjac J, Attwood GT.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e02056-18. doi: 10.1128/AEM.02056-18. Print 2019 Feb 1.

8.

Management of Brain Metastases in Epidermal Growth Factor Receptor Mutant Non-Small-Cell Lung Cancer.

Kelly WJ, Shah NJ, Subramaniam DS.

Front Oncol. 2018 Jul 3;8:208. doi: 10.3389/fonc.2018.00208. eCollection 2018. Review.

9.

Bifidobacterium pseudolongum in the Ceca of Rats Fed Hi-Maize Starch Has Characteristics of a Keystone Species in Bifidobacterial Blooms.

Centanni M, Lawley B, Butts CA, Roy NC, Lee J, Kelly WJ, Tannock GW.

Appl Environ Microbiol. 2018 Jul 17;84(15). pii: e00547-18. doi: 10.1128/AEM.00547-18. Print 2018 Aug 1.

10.

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D; Hungate1000 project collaborators, Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ.

Nat Biotechnol. 2018 Apr;36(4):359-367. doi: 10.1038/nbt.4110. Epub 2018 Mar 19.

11.

Clinical activity of nivolumab in patients with non-clear cell renal cell carcinoma.

Koshkin VS, Barata PC, Zhang T, George DJ, Atkins MB, Kelly WJ, Vogelzang NJ, Pal SK, Hsu J, Appleman LJ, Ornstein MC, Gilligan T, Grivas P, Garcia JA, Rini BI.

J Immunother Cancer. 2018 Jan 29;6(1):9. doi: 10.1186/s40425-018-0319-9.

12.

Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria.

Gilbert RA, Kelly WJ, Altermann E, Leahy SC, Minchin C, Ouwerkerk D, Klieve AV.

Front Microbiol. 2017 Dec 5;8:2340. doi: 10.3389/fmicb.2017.02340. eCollection 2017.

13.

The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003.

Palevich N, Kelly WJ, Leahy SC, Altermann E, Rakonjac J, Attwood GT.

Stand Genomic Sci. 2017 Dec 4;12:72. doi: 10.1186/s40793-017-0285-8. eCollection 2017.

14.

Product review on the Anti-PD-L1 antibody atezolizumab.

Shah NJ, Kelly WJ, Liu SV, Choquette K, Spira A.

Hum Vaccin Immunother. 2018 Feb 1;14(2):269-276. doi: 10.1080/21645515.2017.1403694. Epub 2017 Dec 20.

15.

Monoglobus pectinilyticus gen. nov., sp. nov., a pectinolytic bacterium isolated from human faeces.

Kim CC, Kelly WJ, Patchett ML, Tannock GW, Jordens Z, Stoklosinski HM, Taylor JW, Sims IM, Bell TJ, Rosendale DI.

Int J Syst Evol Microbiol. 2017 Dec;67(12):4992-4998. doi: 10.1099/ijsem.0.002395. Epub 2017 Oct 17.

PMID:
29039307
16.

Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.

Kamke J, Soni P, Li Y, Ganesh S, Kelly WJ, Leahy SC, Shi W, Froula J, Rubin EM, Attwood GT.

BMC Res Notes. 2017 Aug 8;10(1):367. doi: 10.1186/s13104-017-2671-0.

17.

Draft Genome Sequences of 24 Lactococcus lactis Strains.

Backus L, Wels M, Boekhorst J, Dijkstra AR, Beerthuyzen M, Kelly WJ, Siezen RJ, van Hijum SA, Bachmann H.

Genome Announc. 2017 Mar 30;5(13). pii: e01737-16. doi: 10.1128/genomeA.01737-16.

18.

Differential growth of bowel commensal Bacteroides species on plant xylans of differing structural complexity.

Centanni M, Hutchison JC, Carnachan SM, Daines AM, Kelly WJ, Tannock GW, Sims IM.

Carbohydr Polym. 2017 Feb 10;157:1374-1382. doi: 10.1016/j.carbpol.2016.11.017. Epub 2016 Nov 8.

PMID:
27987846
19.

The complete genome sequence of the methanogenic archaeon ISO4-H5 provides insights into the methylotrophic lifestyle of a ruminal representative of the Methanomassiliicoccales.

Li Y, Leahy SC, Jeyanathan J, Henderson G, Cox F, Altermann E, Kelly WJ, Lambie SC, Janssen PH, Rakonjac J, Attwood GT.

Stand Genomic Sci. 2016 Sep 6;11(1):59. doi: 10.1186/s40793-016-0183-5. eCollection 2016.

20.

The complete genome sequence of the rumen methanogen Methanobrevibacter millerae SM9.

Kelly WJ, Pacheco DM, Li D, Attwood GT, Altermann E, Leahy SC.

Stand Genomic Sci. 2016 Aug 17;11:49. doi: 10.1186/s40793-016-0171-9. eCollection 2016.

21.

Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract.

Kelly WJ, Cookson AL, Altermann E, Lambie SC, Perry R, Teh KH, Otter DE, Shapiro N, Woyke T, Leahy SC.

Sci Rep. 2016 Jul 29;6:30768. doi: 10.1038/srep30768.

22.

Draft Genome Sequence of the Rumen Methanogen Methanobrevibacter olleyae YLM1.

Kelly WJ, Li D, Lambie SC, Cox F, Attwood GT, Altermann E, Leahy SC.

Genome Announc. 2016 Apr 7;4(2). pii: e00232-16. doi: 10.1128/genomeA.00232-16.

23.

Complete Genome Sequence of Methanogenic Archaeon ISO4-G1, a Member of the Methanomassiliicoccales, Isolated from a Sheep Rumen.

Kelly WJ, Li D, Lambie SC, Jeyanathan J, Cox F, Li Y, Attwood GT, Altermann E, Leahy SC.

Genome Announc. 2016 Apr 7;4(2). pii: e00221-16. doi: 10.1128/genomeA.00221-16.

24.

The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen.

Kelly WJ, Henderson G, Pacheco DM, Li D, Reilly K, Naylor GE, Janssen PH, Attwood GT, Altermann E, Leahy SC.

Stand Genomic Sci. 2016 Mar 15;11:26. doi: 10.1186/s40793-016-0147-9. eCollection 2016.

25.

The Cytosolic Oligosaccharide-Degrading Proteome of Butyrivibrio Proteoclasticus.

Dunne JC, Kelly WJ, Leahy SC, Li D, Bond JJ, Peng L, Attwood GT, Jordan TW.

Proteomes. 2015 Oct 27;3(4):347-368. doi: 10.3390/proteomes3040347.

26.

The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.

Lambie SC, Kelly WJ, Leahy SC, Li D, Reilly K, McAllister TA, Valle ER, Attwood GT, Altermann E.

Stand Genomic Sci. 2015 Aug 19;10:57. doi: 10.1186/s40793-015-0038-5. eCollection 2015.

27.

RUMINANT NUTRITION SYMPOSIUM: Use of genomics and transcriptomics to identify strategies to lower ruminal methanogenesis.

McAllister TA, Meale SJ, Valle E, Guan LL, Zhou M, Kelly WJ, Henderson G, Attwood GT, Janssen PH.

J Anim Sci. 2015 Apr;93(4):1431-49. doi: 10.2527/jas.2014-8329.

PMID:
26020166
28.

Utilization of grasses for potential biofuel production and phytoremediation of heavy metal contaminated soils.

Balsamo RA, Kelly WJ, Satrio JA, Ruiz-Felix MN, Fetterman M, Wynn R, Hagel K.

Int J Phytoremediation. 2015;17(1-6):448-55. doi: 10.1080/15226514.2014.922918.

PMID:
25495935
29.

Determining the culturability of the rumen bacterial microbiome.

Creevey CJ, Kelly WJ, Henderson G, Leahy SC.

Microb Biotechnol. 2014 Sep;7(5):467-79. doi: 10.1111/1751-7915.12141. Epub 2014 Jul 1.

30.

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, Pinares-Patiño CS, McEwan JC, Janssen PH, Chen F, Visel A, Wang Z, Attwood GT, Rubin EM.

Genome Res. 2014 Sep;24(9):1517-25. doi: 10.1101/gr.168245.113. Epub 2014 Jun 6.

31.

Draft Genome Sequence of Lactococcus lactis subsp. cremoris HPT, the First Defined-Strain Dairy Starter Culture Bacterium.

Lambie SC, Altermann E, Leahy SC, Kelly WJ.

Genome Announc. 2014 Mar 6;2(2). pii: e00107-14. doi: 10.1128/genomeA.00107-14.

32.

The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9.

Kelly WJ, Leahy SC, Li D, Perry R, Lambie SC, Attwood GT, Altermann E.

Stand Genomic Sci. 2014 Dec 8;9:15. doi: 10.1186/1944-3277-9-15. eCollection 2014.

33.

Interaction between the genomes of Lactococcus lactis and phages of the P335 species.

Kelly WJ, Altermann E, Lambie SC, Leahy SC.

Front Microbiol. 2013 Aug 30;4:257. doi: 10.3389/fmicb.2013.00257. eCollection 2013.

34.

The Complete Genome Sequence of Methanobrevibacter sp. AbM4.

Leahy SC, Kelly WJ, Li D, Li Y, Altermann E, Lambie SC, Cox F, Attwood GT.

Stand Genomic Sci. 2013 May 25;8(2):215-27. doi: 10.4056/sigs.3977691. eCollection 2013.

35.

Genome sequencing of rumen bacteria and archaea and its application to methane mitigation strategies.

Leahy SC, Kelly WJ, Ronimus RS, Wedlock N, Altermann E, Attwood GT.

Animal. 2013 Jun;7 Suppl 2:235-43. doi: 10.1017/S1751731113000700. Review.

PMID:
23739466
36.

Lactic acid bacteria convert glucosinolates to nitriles efficiently yet differently from enterobacteriaceae.

Mullaney JA, Kelly WJ, McGhie TK, Ansell J, Heyes JA.

J Agric Food Chem. 2013 Mar 27;61(12):3039-46. doi: 10.1021/jf305442j. Epub 2013 Mar 15.

PMID:
23461529
37.

Structure and function of an acetyl xylan esterase (Est2A) from the rumen bacterium Butyrivibrio proteoclasticus.

Till M, Goldstone DC, Attwood GT, Moon CD, Kelly WJ, Arcus VL.

Proteins. 2013 May;81(5):911-7. doi: 10.1002/prot.24254. Epub 2013 Feb 25.

PMID:
23345031
38.

Rumen microbial (meta)genomics and its application to ruminant production.

Morgavi DP, Kelly WJ, Janssen PH, Attwood GT.

Animal. 2013 Mar;7 Suppl 1:184-201. doi: 10.1017/S1751731112000419. Epub 2012 Mar 1.

PMID:
23031271
39.

Carbohydrate transporting membrane proteins of the rumen bacterium, Butyrivibrio proteoclasticus.

Bond JJ, Dunne JC, Kwan FY, Li D, Zhang K, Leahy SC, Kelly WJ, Attwood GT, Jordan TW.

J Proteomics. 2012 Jun 18;75(11):3138-44. doi: 10.1016/j.jprot.2011.12.013. Epub 2011 Dec 20.

PMID:
22200676
40.

Extracellular polysaccharide-degrading proteome of Butyrivibrio proteoclasticus.

Dunne JC, Li D, Kelly WJ, Leahy SC, Bond JJ, Attwood GT, Jordan TW.

J Proteome Res. 2012 Jan 1;11(1):131-42. doi: 10.1021/pr200864j. Epub 2011 Nov 29.

PMID:
22060546
41.

The large episomes of Butyrivibrio proteoclasticus B316T have arisen through intragenomic gene shuttling from the chromosome to smaller Butyrivibrio-specific plasmids.

Yeoman CJ, Kelly WJ, Rakonjac J, Leahy SC, Altermann E, Attwood GT.

Plasmid. 2011 Jul;66(2):67-78. doi: 10.1016/j.plasmid.2011.05.002. Epub 2011 Jun 12.

PMID:
21683735
42.

Transposition of Tn916 in the four replicons of the Butyrivibrio proteoclasticus B316(T) genome.

Cookson AL, Noel S, Hussein H, Perry R, Sang C, Moon CD, Leahy SC, Altermann E, Kelly WJ, Attwood GT.

FEMS Microbiol Lett. 2011 Mar;316(2):144-51. doi: 10.1111/j.1574-6968.2010.02204.x. Epub 2011 Jan 18.

43.

Lactobacillus plantarum MB452 enhances the function of the intestinal barrier by increasing the expression levels of genes involved in tight junction formation.

Anderson RC, Cookson AL, McNabb WC, Park Z, McCann MJ, Kelly WJ, Roy NC.

BMC Microbiol. 2010 Dec 9;10:316. doi: 10.1186/1471-2180-10-316.

44.

Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures.

Kelly WJ, Ward LJ, Leahy SC.

Genome Biol Evol. 2010;2:729-44. doi: 10.1093/gbe/evq056. Epub 2010 Sep 16.

45.

The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment.

Kelly WJ, Leahy SC, Altermann E, Yeoman CJ, Dunne JC, Kong Z, Pacheco DM, Li D, Noel SJ, Moon CD, Cookson AL, Attwood GT.

PLoS One. 2010 Aug 3;5(8):e11942. doi: 10.1371/journal.pone.0011942.

46.

Modeling shear-induced CHO cell damage in a rotary positive displacement pump.

Kamaraju H, Wetzel K, Kelly WJ.

Biotechnol Prog. 2010 Nov-Dec;26(6):1606-15. doi: 10.1002/btpr.479.

PMID:
20665469
47.

Lactobacillus plantarum DSM 2648 is a potential probiotic that enhances intestinal barrier function.

Anderson RC, Cookson AL, McNabb WC, Kelly WJ, Roy NC.

FEMS Microbiol Lett. 2010 Aug 1;309(2):184-92. doi: 10.1111/j.1574-6968.2010.02038.x. Epub 2010 Jun 16.

48.

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions.

Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, Li D, Kong Z, McTavish S, Sang C, Lambie SC, Janssen PH, Dey D, Attwood GT.

PLoS One. 2010 Jan 28;5(1):e8926. doi: 10.1371/journal.pone.0008926.

49.

Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus.

Goldstone DC, Villas-Bôas SG, Till M, Kelly WJ, Attwood GT, Arcus VL.

Proteins. 2010 May 1;78(6):1457-69. doi: 10.1002/prot.22662.

PMID:
20058325
50.

Reclassification of Clostridium proteoclasticum as Butyrivibrio proteoclasticus comb. nov., a butyrate-producing ruminal bacterium.

Moon CD, Pacheco DM, Kelly WJ, Leahy SC, Li D, Kopecny J, Attwood GT.

Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2041-5. doi: 10.1099/ijs.0.65845-0.

PMID:
18768601

Supplemental Content

Loading ...
Support Center