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Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar.

Straub CT, Bing RG, Wang JP, Chiang VL, Adams MWW, Kelly RM.

Biotechnol Biofuels. 2020 Mar 11;13:43. doi: 10.1186/s13068-020-01675-2. eCollection 2020.


Numerical study on the summertime patches of red tide in the adjacent sea of the Changjiang (Yangtze) River Estuary, China.

Qu D, Yu H, Sun Y, Zhao Y, Wei Q, Yu H, Kelly RM, Yuan Y.

Mar Pollut Bull. 2019 Jun;143:242-255. doi: 10.1016/j.marpolbul.2019.04.027. Epub 2019 Apr 29.


Greater social jetlag associates with higher HbA1c in adults with type 2 diabetes: a cross sectional study.

Kelly RM, Finn J, Healy U, Gallen D, Sreenan S, McDermott JH, Coogan AN.

Sleep Med. 2020 Feb;66:1-9. doi: 10.1016/j.sleep.2019.07.023. Epub 2019 Aug 5.


Rice busk biochar treatment to cobalt-polluted fluvo-aquic soil: speciation and enzyme activities.

Liu B, Huang Q, Su Y, Sun L, Wu T, Wang G, Kelly RM.

Ecotoxicology. 2019 Dec;28(10):1220-1231. doi: 10.1007/s10646-019-02134-x. Epub 2019 Nov 13.


Maleic, glycolic and acetoacetic acids-leaching for recovery of valuable metals from spent lithium-ion batteries: leaching parameters, thermodynamics and kinetics.

Liu B, Huang Q, Su Y, Sun L, Wu T, Wang G, Kelly RM, Wu F.

R Soc Open Sci. 2019 Sep 4;6(9):191061. doi: 10.1098/rsos.191061. eCollection 2019 Sep.


MAP2 immunoreactivity deficit is conserved across the cerebral cortex within individuals with schizophrenia.

DeGiosio R, Kelly RM, DeDionisio AM, Newman JT, Fish KN, Sampson AR, Lewis DA, Sweet RA.

NPJ Schizophr. 2019 Aug 28;5(1):13. doi: 10.1038/s41537-019-0081-0.


Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii.

Straub CT, Khatibi PA, Wang JP, Conway JM, Williams-Rhaesa AM, Peszlen IM, Chiang VL, Adams MWW, Kelly RM.

Nat Commun. 2019 Aug 7;10(1):3548. doi: 10.1038/s41467-019-11376-6.


The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'.

Lee LL, Crosby JR, Rubinstein GM, Laemthong T, Bing RG, Straub CT, Adams MWW, Kelly RM.

Extremophiles. 2020 Jan;24(1):1-15. doi: 10.1007/s00792-019-01116-5. Epub 2019 Jul 29. Review.


Determinants of sulphur chemolithoautotrophy in the extremely thermoacidophilic Sulfolobales.

Zeldes BM, Loder AJ, Counts JA, Haque M, Widney KA, Keller LM, Albers SV, Kelly RM.

Environ Microbiol. 2019 Oct;21(10):3696-3710. doi: 10.1111/1462-2920.14712. Epub 2019 Jul 9.


The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis.

Scott IM, Rubinstein GM, Poole FL 2nd, Lipscomb GL, Schut GJ, Williams-Rhaesa AM, Stevenson DM, Amador-Noguez D, Kelly RM, Adams MWW.

J Biol Chem. 2019 Jun 21;294(25):9995-10005. doi: 10.1074/jbc.RA118.007120. Epub 2019 May 16.


Lignocellulose solubilization and conversion by extremely thermophilic Caldicellulosiruptor bescii improves by maintaining metabolic activity.

Straub CT, Khatibi PA, Otten JK, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2019 Aug;116(8):1901-1908. doi: 10.1002/bit.26993. Epub 2019 May 21.


Extreme thermophiles as emerging metabolic engineering platforms.

Crosby JR, Laemthong T, Lewis AM, Straub CT, Adams MW, Kelly RM.

Curr Opin Biotechnol. 2019 Oct;59:55-64. doi: 10.1016/j.copbio.2019.02.006. Epub 2019 Mar 12. Review.


Transcriptomic analysis of IgG4 Fc-fusion protein degradation in a panel of clonally-derived CHO cell lines using RNASeq.

Clarke C, Gallagher C, Kelly RM, Henry M, Meleady P, Frye CC, Osborne MD, Brady CP, Barron N, Clynes M.

Biotechnol Bioeng. 2019 Jun;116(6):1556-1562. doi: 10.1002/bit.26958. Epub 2019 Mar 21.


Density of small dendritic spines and microtubule-associated-protein-2 immunoreactivity in the primary auditory cortex of subjects with schizophrenia.

McKinney BC, MacDonald ML, Newman JT, Shelton MA, DeGiosio RA, Kelly RM, Fish KN, Sampson AR, Lewis DA, Sweet RA.

Neuropsychopharmacology. 2019 May;44(6):1055-1061. doi: 10.1038/s41386-019-0350-7. Epub 2019 Feb 22.


Rb analog Whi5 regulates G1 to S transition and cell size but not replicative lifespan in budding yeast.

Crane MM, Tsuchiya M, Blue BW, Almazan JD, Chen KL, Duffy SR, Golubeva A, Grimm AM, Guard AM, Hill SA, Huynh E, Kelly RM, Kiflezghi M, Kim HD, Lee M, Lee TI, Li J, Nguyen BMG, Whalen RM, Yeh FY, McCormick M, Kennedy BK, Delaney JR, Kaeberlein M.

Transl Med Aging. 2019;3:104-108. doi: 10.1016/j.tma.2019.10.002. Epub 2019 Oct 31.


Extremely Thermoacidophilic Metallosphaera Species Mediate Mobilization and Oxidation of Vanadium and Molybdenum Oxides.

Wheaton GH, Vitko NP, Counts JA, Dulkis JA, Podolsky I, Mukherjee A, Kelly RM.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02805-18. doi: 10.1128/AEM.02805-18. Print 2019 Mar 1.


Primary total hip arthroplasty: registry data for fixation methods and bearing options at a minimum of 10 years.

Sheridan GA, Kelly RM, McDonnell SM, Walsh F, O'Byrne JM, Kenny PJ.

Ir J Med Sci. 2019 Aug;188(3):873-877. doi: 10.1007/s11845-018-1948-1. Epub 2018 Dec 17.


Clocks in the clinic: circadian rhythms in health and disease.

Kelly RM, Healy U, Sreenan S, McDermott JH, Coogan AN.

Postgrad Med J. 2018 Nov;94(1117):653-658. doi: 10.1136/postgradmedj-2018-135719. Epub 2018 Dec 6. Review.


Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.

Lee LL, Hart WS, Lunin VV, Alahuhta M, Bomble YJ, Himmel ME, Blumer-Schuette SE, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e01983-18. doi: 10.1128/AEM.01983-18. Print 2019 Feb 1.


Bat rabies in Washington State: Temporal-spatial trends and risk factors for zoonotic transmission (2000-2017).

Bonwitt J, Oltean H, Lang M, Kelly RM, Goldoft M.

PLoS One. 2018 Oct 9;13(10):e0205069. doi: 10.1371/journal.pone.0205069. eCollection 2018.


A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum.

Zeldes BM, Straub CT, Otten JK, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2018 Dec;115(12):2951-2961. doi: 10.1002/bit.26829. Epub 2018 Oct 23.


Simultaneous biosynthesis of (R)-acetoin and ethylene glycol from D-xylose through in vitro metabolic engineering.

Jia X, Kelly RM, Han Y.

Metab Eng Commun. 2018 Jun 27;7:e00074. doi: 10.1016/j.mec.2018.e00074. eCollection 2018 Dec.


Engineering redox-balanced ethanol production in the cellulolytic and extremely thermophilic bacterium, Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Rubinstein GM, Scott IM, Lipscomb GL, Poole Ii FL, Kelly RM, Adams MWW.

Metab Eng Commun. 2018 May 28;7:e00073. doi: 10.1016/j.mec.2018.e00073. eCollection 2018 Dec.


Parsing in vivo and in vitro contributions to microcrystalline cellulose hydrolysis by multidomain glycoside hydrolases in the Caldicellulosiruptor bescii secretome.

Conway JM, Crosby JR, McKinley BS, Seals NL, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2018 Oct;115(10):2426-2440. doi: 10.1002/bit.26773. Epub 2018 Aug 1.


Biotechnology of extremely thermophilic archaea.

Straub CT, Counts JA, Nguyen DMN, Wu CH, Zeldes BM, Crosby JR, Conway JM, Otten JK, Lipscomb GL, Schut GJ, Adams MWW, Kelly RM.

FEMS Microbiol Rev. 2018 Sep 1;42(5):543-578. doi: 10.1093/femsre/fuy012. Review.


Clonal variation in productivity and proteolytic clipping of an Fc-fusion protein in CHO cells: Proteomic analysis suggests a role for defective protein folding and the UPR.

Henry M, Gallagher C, Kelly RM, Frye CC, Osborne MD, Brady CP, Barron N, Clynes M, Meleady P.

J Biotechnol. 2018 Sep 10;281:21-30. doi: 10.1016/j.jbiotec.2018.05.018. Epub 2018 May 31.


Generation of High Expressing Chinese Hamster Ovary Cell Pools Using the Leap-In Transposon System.

Balasubramanian S, Peery RB, Minshull J, Lee M, White R, Kelly RM, Barnard GC.

Biotechnol J. 2018 Oct;13(10):e1700748. doi: 10.1002/biot.201700748. Epub 2018 Jun 11.


Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Awuku NK, Lipscomb GL, Poole FL, Rubinstein GM, Conway JM, Kelly RM, Adams MWW.

Extremophiles. 2018 Jul;22(4):629-638. doi: 10.1007/s00792-018-1023-x. Epub 2018 May 24.


Identification of Cellular Sources of IL-2 Needed for Regulatory T Cell Development and Homeostasis.

Owen DL, Mahmud SA, Vang KB, Kelly RM, Blazar BR, Smith KA, Farrar MA.

J Immunol. 2018 Jun 15;200(12):3926-3933. doi: 10.4049/jimmunol.1800097. Epub 2018 May 4.


The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate.

Poudel S, Giannone RJ, Basen M, Nookaew I, Poole FL 2nd, Kelly RM, Adams MWW, Hettich RL.

Biotechnol Biofuels. 2018 Mar 23;11:80. doi: 10.1186/s13068-018-1076-1. eCollection 2018.


Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.

Lee LL, Blumer-Schuette SE, Izquierdo JA, Zurawski JV, Loder AJ, Conway JM, Elkins JG, Podar M, Clum A, Jones PC, Piatek MJ, Weighill DA, Jacobson DA, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02694-17. doi: 10.1128/AEM.02694-17. Print 2018 May 1.


Understanding biopharmaceutical production at single nucleotide resolution using ribosome footprint profiling.

Tzani I, Monger C, Kelly P, Barron N, Kelly RM, Clarke C.

Curr Opin Biotechnol. 2018 Oct;53:182-190. doi: 10.1016/j.copbio.2018.01.030. Epub 2018 Feb 19. Review.


Distribution and removal of organochlorine pesticides in waste clay bricks from an abandoned manufacturing plant using low-temperature thermal desorption technology.

Cong X, Li F, Kelly RM, Xue N.

Environ Sci Pollut Res Int. 2018 Apr;25(12):12119-12126. doi: 10.1007/s11356-018-1422-7. Epub 2018 Feb 17.


Extraocular muscle regeneration in zebrafish requires late signals from Insulin-like growth factors.

Saera-Vila A, Louie KW, Sha C, Kelly RM, Kish PE, Kahana A.

PLoS One. 2018 Feb 7;13(2):e0192214. doi: 10.1371/journal.pone.0192214. eCollection 2018.


Appropriate use criteria for transthoracic echocardiography: Are they relevant to European centers?

Kerley RN, Thornton KP, Kelly RM, O'Flynn S.

Echocardiography. 2018 Jan;35(1):17-23. doi: 10.1111/echo.13730. Epub 2017 Nov 21.


Modulation of IgG1 immunoeffector function by glycoengineering of the GDP-fucose biosynthesis pathway.

Kelly RM, Kowle RL, Lian Z, Strifler BA, Witcher DR, Parekh BS, Wang T, Frye CC.

Biotechnol Bioeng. 2018 Mar;115(3):705-718. doi: 10.1002/bit.26496. Epub 2017 Dec 1.


Functional Analysis of the Glucan Degradation Locus in Caldicellulosiruptor bescii Reveals Essential Roles of Component Glycoside Hydrolases in Plant Biomass Deconstruction.

Conway JM, McKinley BS, Seals NL, Hernandez D, Khatibi PA, Poudel S, Giannone RJ, Hettich RL, Williams-Rhaesa AM, Lipscomb GL, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2017 Dec 1;83(24). pii: e01828-17. doi: 10.1128/AEM.01828-17. Print 2017 Dec 15.


Impact of growth mode, phase, and rate on the metabolic state of the extremely thermophilic archaeon Pyrococcus furiosus.

Khatibi PA, Chou CJ, Loder AJ, Zurawski JV, Adams MWW, Kelly RM.

Biotechnol Bioeng. 2017 Dec;114(12):2947-2954. doi: 10.1002/bit.26408. Epub 2017 Oct 6.


Bioavailability of Carbohydrate Content in Natural and Transgenic Switchgrasses for the Extreme Thermophile Caldicellulosiruptor bescii.

Zurawski JV, Khatibi PA, Akinosho HO, Straub CT, Compton SH, Conway JM, Lee LL, Ragauskas AJ, Davison BH, Adams MWW, Kelly RM.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00969-17. doi: 10.1128/AEM.00969-17. Print 2017 Sep 1.


VapC toxins drive cellular dormancy under uranium stress for the extreme thermoacidophile Metallosphaera prunae.

Mukherjee A, Wheaton GH, Counts JA, Ijeomah B, Desai J, Kelly RM.

Environ Microbiol. 2017 Jul;19(7):2831-2842. doi: 10.1111/1462-2920.13808. Epub 2017 Jul 7.


Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Poole FL 2nd, Dinsmore JT, Lipscomb GL, Rubinstein GM, Scott IM, Conway JM, Lee LL, Khatibi PA, Kelly RM, Adams MWW.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00444-17. doi: 10.1128/AEM.00444-17. Print 2017 Jul 15.


Haemophagocytic lymphohistiocytosis presenting as HELLP syndrome: a diagnostic and therapeutic challenge.

Kerley RN, Kelly RM, Cahill MR, Kenny LC.

BMJ Case Rep. 2017 Apr 22;2017. pii: bcr-2017-219516. doi: 10.1136/bcr-2017-219516.


Two Distinct α-l-Arabinofuranosidases in Caldicellulosiruptor Species Drive Degradation of Arabinose-Based Polysaccharides.

Saleh MA, Han WJ, Lu M, Wang B, Li H, Kelly RM, Li FL.

Appl Environ Microbiol. 2017 Jun 16;83(13). pii: e00574-17. doi: 10.1128/AEM.00574-17. Print 2017 Jul 1.


Selective Loss of Smaller Spines in Schizophrenia.

MacDonald ML, Alhassan J, Newman JT, Richard M, Gu H, Kelly RM, Sampson AR, Fish KN, Penzes P, Wills ZP, Lewis DA, Sweet RA.

Am J Psychiatry. 2017 Jun 1;174(6):586-594. doi: 10.1176/appi.ajp.2017.16070814. Epub 2017 Mar 31.


Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.

Blumer-Schuette SE, Zurawski JV, Conway JM, Khatibi P, Lewis DL, Li Q, Chiang VL, Kelly RM.

Microb Biotechnol. 2017 Nov;10(6):1546-1557. doi: 10.1111/1751-7915.12494. Epub 2017 Mar 20.


Extremely thermophilic energy metabolisms: biotechnological prospects.

Straub CT, Zeldes BM, Schut GJ, Adams MW, Kelly RM.

Curr Opin Biotechnol. 2017 Jun;45:104-112. doi: 10.1016/j.copbio.2017.02.016. Epub 2017 Mar 16. Review.


Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms.

Counts JA, Zeldes BM, Lee LL, Straub CT, Adams MWW, Kelly RM.

Wiley Interdiscip Rev Syst Biol Med. 2017 May;9(3). doi: 10.1002/wsbm.1377. Epub 2017 Feb 16. Review.

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