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Severe inbreeding depression is predicted by the "rare allele load" in Mimulus guttatus.

Brown KE, Kelly JK.

Evolution. 2019 Nov 11. doi: 10.1111/evo.13876. [Epub ahead of print]



Wessinger CA, Kelly JK.

Am Nat. 2019 Sep;194(3):439. doi: 10.1086/704288. Epub 2019 Jul 2. No abstract available.


Individualized mating system estimation using genomic data.

Colicchio J, Monnahan PJ, Wessinger CA, Brown K, Kern JR, Kelly JK.

Mol Ecol Resour. 2019 Sep 13. doi: 10.1111/1755-0998.13094. [Epub ahead of print]


Quantitative Genetic Mapping and Genome Assembly in the Lesser Wax Moth Achroia grisella.

Koseva BS, Hackett JL, Zhou Y, Harris BR, Kelly JK, Greenfield MD, Gleason JM, Macdonald SJ.

G3 (Bethesda). 2019 Jul 9;9(7):2349-2361. doi: 10.1534/g3.119.400090.


GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity.

Flagel LE, Blackman BK, Fishman L, Monnahan PJ, Sweigart A, Kelly JK.

PLoS Comput Biol. 2019 Apr 15;15(4):e1006949. doi: 10.1371/journal.pcbi.1006949. eCollection 2019 Apr.


Pervasive Linked Selection and Intermediate-Frequency Alleles Are Implicated in an Evolve-and-Resequencing Experiment of Drosophila simulans.

Kelly JK, Hughes KA.

Genetics. 2019 Mar;211(3):943-961. doi: 10.1534/genetics.118.301824. Epub 2018 Dec 28.


Extreme copy number variation at a tRNA ligase gene affecting phenology and fitness in yellow monkeyflowers.

Nelson TC, Monnahan PJ, McIntosh MK, Anderson K, MacArthur-Waltz E, Finseth FR, Kelly JK, Fishman L.

Mol Ecol. 2019 Mar;28(6):1460-1475. doi: 10.1111/mec.14904. Epub 2018 Dec 10.


Parental experience modifies the Mimulus methylome.

Colicchio JM, Kelly JK, Hileman LC.

BMC Genomics. 2018 Oct 12;19(1):746. doi: 10.1186/s12864-018-5087-x.


Selective trade-offs maintain alleles underpinning complex trait variation in plants.

Troth A, Puzey JR, Kim RS, Willis JH, Kelly JK.

Science. 2018 Aug 3;361(6401):475-478. doi: 10.1126/science.aat5760.


SNP-skimming: A fast approach to map loci generating quantitative variation in natural populations.

Wessinger CA, Kelly JK, Jiang P, Rausher MD, Hileman LC.

Mol Ecol Resour. 2018 Nov;18(6):1402-1414. doi: 10.1111/1755-0998.12930. Epub 2018 Aug 8.


Selfing Can Facilitate Transitions between Pollination Syndromes.

Wessinger CA, Kelly JK.

Am Nat. 2018 May;191(5):582-594. doi: 10.1086/696856. Epub 2018 Mar 14. Erratum in: Am Nat. 2019 Sep;194(3):439.


Resolution of Metastatic Colon Cancer upon Withdrawal of Anti-TNF Therapy for Crohn's Disease.

Wiksyk B, Joe H, Fenton D, Kelly JK, Truong PT.

J Gastrointest Cancer. 2019 Sep;50(3):665-667. doi: 10.1007/s12029-018-0107-2. No abstract available.


The potential role of hybridization in diversification and speciation in an insular plant lineage: insights from synthetic interspecific hybrids.

Kerbs B, Ressler J, Kelly JK, Mort ME, Santos-Guerra A, Gibson MJS, Caujapé-Castells J, Crawford DJ.

AoB Plants. 2017 Sep 1;9(5):plx043. doi: 10.1093/aobpla/plx043. eCollection 2017 Sep.


Antagonistic pleiotropy can maintain fitness variation in annual plants.

Brown KE, Kelly JK.

J Evol Biol. 2018 Jan;31(1):46-56. doi: 10.1111/jeb.13192. Epub 2017 Nov 8.


The genetic breakdown of sporophytic self-incompatibility in Tolpis coronopifolia (Asteraceae).

Koseva B, Crawford DJ, Brown KE, Mort ME, Kelly JK.

New Phytol. 2017 Dec;216(4):1256-1267. doi: 10.1111/nph.14759. Epub 2017 Sep 11.


The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus.

Monnahan PJ, Kelly JK.

Genetics. 2017 Jul;206(3):1621-1635. doi: 10.1534/genetics.117.201483. Epub 2017 Apr 28.


Population structure and local selection yield high genomic variation in Mimulus guttatus.

Puzey JR, Willis JH, Kelly JK.

Mol Ecol. 2017 Jan;26(2):519-535. doi: 10.1111/mec.13922. Epub 2016 Dec 19.


Transgenerational plasticity is sex-dependent and persistent in yellow monkeyflower (Mimulus guttatus).

Akkerman KC, Sattarin A, Kelly JK, Scoville AG.

Environ Epigenet. 2016 May 5;2(2):dvw003. doi: 10.1093/eep/dvw003. eCollection 2016 Apr.


A Segregating Inversion Generates Fitness Variation in Yellow Monkeyflower (Mimulus guttatus).

Lee YW, Fishman L, Kelly JK, Willis JH.

Genetics. 2016 Apr;202(4):1473-84. doi: 10.1534/genetics.115.183566. Epub 2016 Feb 11.


Naturally segregating loci exhibit epistasis for fitness.

Monnahan PJ, Kelly JK.

Biol Lett. 2015 Aug;11(8). pii: 20150498. doi: 10.1098/rsbl.2015.0498.


DNA methylation and gene expression in Mimulus guttatus.

Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC.

BMC Genomics. 2015 Jul 7;16:507. doi: 10.1186/s12864-015-1668-0.


A genomic selection component analysis characterizes migration-selection balance.

Monnahan PJ, Colicchio J, Kelly JK.

Evolution. 2015 Jul;69(7):1713-27. doi: 10.1111/evo.12698. Epub 2015 Jul 14.


Epistasis Is a Major Determinant of the Additive Genetic Variance in Mimulus guttatus.

Monnahan PJ, Kelly JK.

PLoS Genet. 2015 May 6;11(5):e1005201. doi: 10.1371/journal.pgen.1005201. eCollection 2015 May.


Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently derived insular lineage.

Mort ME, Crawford DJ, Kelly JK, Santos-Guerra A, Menezes de Sequeira M, Moura M, Caujapé-Castells J.

Am J Bot. 2015 Apr;102(4):634-41. doi: 10.3732/ajb.1400551. Epub 2015 Apr 10.


Centromere-associated meiotic drive and female fitness variation in Mimulus.

Fishman L, Kelly JK.

Evolution. 2015 May;69(5):1208-18. doi: 10.1111/evo.12661. Epub 2015 May 8.


Gene expression plasticity resulting from parental leaf damage in Mimulus guttatus.

Colicchio JM, Monnahan PJ, Kelly JK, Hileman LC.

New Phytol. 2015 Jan;205(2):894-906. doi: 10.1111/nph.13081. Epub 2014 Oct 8.


A high-resolution genetic map of yellow monkeyflower identifies chemical defense QTLs and recombination rate variation.

Holeski LM, Monnahan P, Koseva B, McCool N, Lindroth RL, Kelly JK.

G3 (Bethesda). 2014 Mar 13;4(5):813-21. doi: 10.1534/g3.113.010124.


On the importance of balancing selection in plants.

Delph LF, Kelly JK.

New Phytol. 2014 Jan;201(1):45-56. doi: 10.1111/nph.12441. Epub 2013 Aug 19. Review.


The genomic signal of partial sweeps in Mimulus guttatus.

Kelly JK, Koseva B, Mojica JP.

Genome Biol Evol. 2013;5(8):1457-69. doi: 10.1093/gbe/evt100. Erratum in: Genome Biol Evol. 2013;5(9):1610.


Identification of a major QTL that alters flowering time at elevated [CO(2)] in Arabidopsis thaliana.

Ward JK, Samanta Roy D, Chatterjee I, Bone CR, Springer CJ, Kelly JK.

PLoS One. 2012;7(11):e49028. doi: 10.1371/journal.pone.0049028. Epub 2012 Nov 21.


A Bayesian method for the joint estimation of outcrossing rate and inbreeding depression.

Koelling VA, Monnahan PJ, Kelly JK.

Heredity (Edinb). 2012 Dec;109(6):393-400. doi: 10.1038/hdy.2012.58. Epub 2012 Sep 19.


Spatially and temporally varying selection on intrapopulation quantitative trait loci for a life history trade-off in Mimulus guttatus.

Mojica JP, Lee YW, Willis JH, Kelly JK.

Mol Ecol. 2012 Aug;21(15):3718-28. doi: 10.1111/j.1365-294X.2012.05662.x. Epub 2012 Jun 11.


The effect of noise exposure on the cervical vestibular evoked myogenic potential.

Akin FW, Murnane OD, Tampas JW, Clinard C, Byrd S, Kelly JK.

Ear Hear. 2012 Jul-Aug;33(4):458-65. doi: 10.1097/AUD.0b013e3182498c5f.


The statistics of bulk segregant analysis using next generation sequencing.

Magwene PM, Willis JH, Kelly JK.

PLoS Comput Biol. 2011 Nov;7(11):e1002255. doi: 10.1371/journal.pcbi.1002255. Epub 2011 Nov 3.


Altitudinal variation at duplicated β-globin genes in deer mice: effects of selection, recombination, and gene conversion.

Storz JF, Natarajan C, Cheviron ZA, Hoffmann FG, Kelly JK.

Genetics. 2012 Jan;190(1):203-16. doi: 10.1534/genetics.111.134494. Epub 2011 Oct 31.


Interactions among flower-size QTL of Mimulus guttatus are abundant but highly variable in nature.

Kelly JK, Mojica JP.

Genetics. 2011 Dec;189(4):1461-71. doi: 10.1534/genetics.111.132423. Epub 2011 Sep 16.


Rapid evolution caused by pollinator loss in Mimulus guttatus.

Roels SA, Kelly JK.

Evolution. 2011 Sep;65(9):2541-52. doi: 10.1111/j.1558-5646.2011.01326.x.


Explaining the heritability of an ecologically significant trait in terms of individual quantitative trait loci.

Scoville AG, Lee YW, Willis JH, Kelly JK.

Biol Lett. 2011 Dec 23;7(6):896-8. doi: 10.1098/rsbl.2011.0409. Epub 2011 Jun 8.


Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus.

Scoville AG, Barnett LL, Bodbyl-Roels S, Kelly JK, Hileman LC.

New Phytol. 2011 Jul;191(1):251-63. doi: 10.1111/j.1469-8137.2011.03656.x. Epub 2011 Feb 25.


Viability selection prior to trait expression is an essential component of natural selection.

Mojica JP, Kelly JK.

Proc Biol Sci. 2010 Oct 7;277(1696):2945-50. doi: 10.1098/rspb.2010.0568. Epub 2010 May 12.


The genetics of phenotypic plasticity in plant defense: trichome production in Mimulus guttatus.

Holeski LM, Chase-Alone R, Kelly JK.

Am Nat. 2010 Apr;175(4):391-400. doi: 10.1086/651300.


Inbreeding depression in an asexual population of Mimulus guttatus.

Marriage TN, Kelly JK.

J Evol Biol. 2009 Nov;22(11):2320-31. doi: 10.1111/j.1420-9101.2009.01848.x. Epub 2009 Oct 12.


Inhibition of thromboxane A2-induced arrhythmias and intracellular calcium changes in cardiac myocytes by blockade of the inositol trisphosphate pathway.

Wacker MJ, Kosloski LM, Gilbert WJ, Touchberry CD, Moore DS, Kelly JK, Brotto M, Orr JA.

J Pharmacol Exp Ther. 2009 Dec;331(3):917-24. doi: 10.1124/jpet.109.157677. Epub 2009 Sep 9.


Plant mating systems in a changing world.

Eckert CG, Kalisz S, Geber MA, Sargent R, Elle E, Cheptou PO, Goodwillie C, Johnston MO, Kelly JK, Moeller DA, Porcher E, Ree RH, Vallejo-Marín M, Winn AA.

Trends Ecol Evol. 2010 Jan;25(1):35-43. doi: 10.1016/j.tree.2009.06.013. Epub 2009 Aug 13. Review.


Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin.

Storz JF, Runck AM, Sabatino SJ, Kelly JK, Ferrand N, Moriyama H, Weber RE, Fago A.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14450-5. doi: 10.1073/pnas.0905224106. Epub 2009 Aug 10.


Contribution of chromosomal polymorphisms to the G-matrix of Mimulus guttatus.

Scoville A, Lee YW, Willis JH, Kelly JK.

New Phytol. 2009 Aug;183(3):803-15. doi: 10.1111/j.1469-8137.2009.02947.x.


Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae).

Marriage TN, Hudman S, Mort ME, Orive ME, Shaw RG, Kelly JK.

Heredity (Edinb). 2009 Oct;103(4):310-7. doi: 10.1038/hdy.2009.67. Epub 2009 Jun 10.


The genetic consequences of fluctuating inbreeding depression and the evolution of plant selfing rates.

Porcher E, Kelly JK, Cheptou PO, Eckert CG, Johnston MO, Kalisz S.

J Evol Biol. 2009 Apr;22(4):708-17. doi: 10.1111/j.1420-9101.2009.01705.x. Epub 2009 Feb 18.


Connecting QTLS to the g-matrix of evolutionary quantitative genetics.

Kelly JK.

Evolution. 2009 Apr;63(4):813-25. doi: 10.1111/j.1558-5646.2008.00590.x. Epub 2008 Dec 12.


Correlations among fertility components can maintain mixed mating in plants.

Johnston MO, Porcher E, Cheptou PO, Eckert CG, Elle E, Geber MA, Kalisz S, Kelly JK, Moeller DA, Vallejo-Marín M, Winn AA.

Am Nat. 2009 Jan;173(1):1-11. doi: 10.1086/593705.


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