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Different ways to be redundant.

Kellogg EA.

Nat Genet. 2019 May;51(5):770-771. doi: 10.1038/s41588-019-0406-y. No abstract available.


Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium.

McAllister CA, McKain MR, Li M, Bookout B, Kellogg EA.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170403. doi: 10.1098/rstb.2017.0403.


Getting closer: vein density in C4 leaves.

Kumar D, Kellogg EA.

New Phytol. 2019 Feb;221(3):1260-1267. doi: 10.1111/nph.15491. Epub 2018 Oct 18. Review.


A Dynamic Co-expression Map of Early Inflorescence Development in Setaria viridis Provides a Resource for Gene Discovery and Comparative Genomics.

Zhu C, Yang J, Box MS, Kellogg EA, Eveland AL.

Front Plant Sci. 2018 Sep 12;9:1309. doi: 10.3389/fpls.2018.01309. eCollection 2018.


Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens.

Saeidi S, McKain MR, Kellogg EA.

J Vis Exp. 2018 Mar 8;(133). doi: 10.3791/56837.


Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn.

Teisher JK, McKain MR, Schaal BA, Kellogg EA.

Ann Bot. 2017 Nov 10;120(5):725-738. doi: 10.1093/aob/mcx058.


Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.

Huang P, Jiang H, Zhu C, Barry K, Jenkins J, Sandor L, Schmutz J, Box MS, Kellogg EA, Brutnell TP.

Nat Plants. 2017 Apr 18;3:17054. doi: 10.1038/nplants.2017.54.


High-throughput phenotyping.

Gehan MA, Kellogg EA.

Am J Bot. 2017 Apr;104(4):505-508. doi: 10.3732/ajb.1700044. Epub 2017 Apr 11. No abstract available.


Repeated and diverse losses of corolla bilateral symmetry in the Lamiaceae.

Zhong J, Preston JC, Hileman LC, Kellogg EA.

Ann Bot. 2017 May 1;119(7):1211-1223. doi: 10.1093/aob/mcx012.


Comprehensive identification and clustering of CLV3/ESR-related (CLE) genes in plants finds groups with potentially shared function.

Goad DM, Zhu C, Kellogg EA.

New Phytol. 2017 Oct;216(2):605-616. doi: 10.1111/nph.14348. Epub 2016 Dec 1.


The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes.

Studer AJ, Schnable JC, Weissmann S, Kolbe AR, McKain MR, Shao Y, Cousins AB, Kellogg EA, Brutnell TP.

Genome Biol. 2016 Oct 28;17(1):223.


Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.

McKain MR, Hartsock RH, Wohl MM, Kellogg EA.

Bioinformatics. 2017 Jan 1;33(1):130-132. doi: 10.1093/bioinformatics/btw583. Epub 2016 Sep 14.


Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants.

Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK, Jez JM, Kellogg EA, Pandey S.

New Phytol. 2017 Oct;216(2):562-575. doi: 10.1111/nph.14180. Epub 2016 Sep 16. Erratum in: New Phytol. 2018 Jan;217(2):960.


Cross species selection scans identify components of C4 photosynthesis in the grasses.

Huang P, Studer AJ, Schnable JC, Kellogg EA, Brutnell TP.

J Exp Bot. 2017 Jan;68(2):127-135. doi: 10.1093/jxb/erw256. Epub 2016 Jul 19.


Abscission zone development in Setaria viridis and its domesticated relative, Setaria italica.

Hodge JG, Kellogg EA.

Am J Bot. 2016 Jun;103(6):998-1005. doi: 10.3732/ajb.1500499. Epub 2016 Jun 1.


Multilocus phylogeny and phylogenomics of Eriochrysis P. Beauv. (Poaceae-Andropogoneae): Taxonomic implications and evidence of interspecific hybridization.

Welker CAD, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA.

Mol Phylogenet Evol. 2016 Jun;99:155-167. doi: 10.1016/j.ympev.2016.02.022. Epub 2016 Mar 3.


Has the connection between polyploidy and diversification actually been tested?

Kellogg EA.

Curr Opin Plant Biol. 2016 Apr;30:25-32. doi: 10.1016/j.pbi.2016.01.002. Epub 2016 Feb 8. Review.


Brachypodium distachyon as a Genetic Model System.

Kellogg EA.

Annu Rev Genet. 2015;49:1-20. doi: 10.1146/annurev-genet-112414-055135. Epub 2015 Sep 17. Review.


Stepwise evolution of corolla symmetry in CYCLOIDEA2-like and RADIALIS-like gene expression patterns in Lamiales.

Zhong J, Kellogg EA.

Am J Bot. 2015 Aug;102(8):1260-7. doi: 10.3732/ajb.1500191. Epub 2015 Aug 6.


Phylogenetic analysis of Saccharum s.l. (Poaceae; Andropogoneae), with emphasis on the circumscription of the South American species.

Welker CA, Souza-Chies TT, Longhi-Wagner HM, Peichoto MC, McKain MR, Kellogg EA.

Am J Bot. 2015 Feb;102(2):248-63. doi: 10.3732/ajb.1400397. Epub 2015 Feb 5.


Genome sequencing: Long reads for a short plant.

Kellogg EA.

Nat Plants. 2015 Nov 11;1:15169. doi: 10.1038/nplants.2015.169. No abstract available.


Expanding the role of botanical gardens in the future of food.

Miller AJ, Novy A, Glover J, Kellogg EA, Maul JE, Raven P, Jackson PW.

Nat Plants. 2015 Jun 1;1:15078. doi: 10.1038/nplants.2015.78. No abstract available.


Duplication and expression of CYC2-like genes in the origin and maintenance of corolla zygomorphy in Lamiales.

Zhong J, Kellogg EA.

New Phytol. 2015 Jan;205(2):852-68. doi: 10.1111/nph.13104. Epub 2014 Oct 20.


Speaking of food: connecting basic and applied plant science.

Gross BL, Kellogg EA, Miller AJ.

Am J Bot. 2014 Oct;101(10):1597-600. doi: 10.3732/ajb.1400409. Epub 2014 Oct 14.


Allopolyploidy, diversification, and the Miocene grassland expansion.

Estep MC, McKain MR, Vela Diaz D, Zhong J, Hodge JG, Hodkinson TR, Layton DJ, Malcomber ST, Pasquet R, Kellogg EA.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15149-54. doi: 10.1073/pnas.1404177111. Epub 2014 Oct 6. Erratum in: Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):E257.


Population genetics of Setaria viridis, a new model system.

Huang P, Feldman M, Schroder S, Bahri BA, Diao X, Zhi H, Estep M, Baxter I, Devos KM, Kellogg EA.

Mol Ecol. 2014 Oct;23(20):4912-25. doi: 10.1111/mec.12907. Epub 2014 Sep 22.


A global database of C4 photosynthesis in grasses.

Osborne CP, Salomaa A, Kluyver TA, Visser V, Kellogg EA, Morrone O, Vorontsova MS, Clayton WD, Simpson DA.

New Phytol. 2014 Nov;204(3):441-6. doi: 10.1111/nph.12942. Epub 2014 Jul 21. No abstract available.


Morphological, phylogenetic, and ecological diversity of the new model species Setaria viridis (Poaceae: Paniceae) and its close relatives.

Layton DJ, Kellogg EA.

Am J Bot. 2014 Mar;101(3):539-57. doi: 10.3732/ajb.1300428. Epub 2014 Mar 14.


Early inflorescence development in the grasses (Poaceae).

Kellogg EA, Camara PE, Rudall PJ, Ladd P, Malcomber ST, Whipple CJ, Doust AN.

Front Plant Sci. 2013 Jul 23;4:250. doi: 10.3389/fpls.2013.00250. eCollection 2013.


C4 photosynthesis.

Kellogg EA.

Curr Biol. 2013 Jul 22;23(14):R594-9. doi: 10.1016/j.cub.2013.04.066. No abstract available.


Genes and QTLs controlling inflorescence and stem branch architecture in Leymus (Poaceae: Triticeae) Wildrye.

Larson SR, Kellogg EA, Jensen KB.

J Hered. 2013 Sep-Oct;104(5):678-91. doi: 10.1093/jhered/est033. Epub 2013 Jun 12.


Eleven diverse nuclear-encoded phylogenetic markers for the subfamily Panicoideae (Poaceae).

Estep MC, Vela Diaz DM, Zhong J, Kellogg EA.

Am J Bot. 2012 Nov;99(11):e443-6. doi: 10.3732/ajb.1200186. Epub 2012 Oct 29.


TCP transcription factor, BRANCH ANGLE DEFECTIVE 1 (BAD1), is required for normal tassel branch angle formation in maize.

Bai F, Reinheimer R, Durantini D, Kellogg EA, Schmidt RJ.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12225-30. doi: 10.1073/pnas.1202439109. Epub 2012 Jul 5.


Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives.

Triplett JK, Wang Y, Zhong J, Kellogg EA.

PLoS One. 2012;7(6):e38702. doi: 10.1371/journal.pone.0038702. Epub 2012 Jun 18.


Reference genome sequence of the model plant Setaria.

Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM.

Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196.


Adaptive evolution of C(4) photosynthesis through recurrent lateral gene transfer.

Christin PA, Edwards EJ, Besnard G, Boxall SF, Gregory R, Kellogg EA, Hartwell J, Osborne CP.

Curr Biol. 2012 Mar 6;22(5):445-9. doi: 10.1016/j.cub.2012.01.054. Epub 2012 Feb 16.


The role of teosinte glume architecture (tga1) in coordinated regulation and evolution of grass glumes and inflorescence axes.

Preston JC, Wang H, Kursel L, Doebley J, Kellogg EA.

New Phytol. 2012 Jan;193(1):204-15. doi: 10.1111/j.1469-8137.2011.03908.x. Epub 2011 Sep 29.


The origins of C4 grasslands: integrating evolutionary and ecosystem science.

Edwards EJ, Osborne CP, Strömberg CA, Smith SA; C4 Grasses Consortium, Bond WJ, Christin PA, Cousins AB, Duvall MR, Fox DL, Freckleton RP, Ghannoum O, Hartwell J, Huang Y, Janis CM, Keeley JE, Kellogg EA, Knapp AK, Leakey AD, Nelson DM, Saarela JM, Sage RF, Sala OE, Salamin N, Still CJ, Tipple B.

Science. 2010 Apr 30;328(5978):587-91. doi: 10.1126/science.1177216. Review.


Evolution of AGL6-like MADS box genes in grasses (Poaceae): ovule expression is ancient and palea expression is new.

Reinheimer R, Kellogg EA.

Plant Cell. 2009 Sep;21(9):2591-605. doi: 10.1105/tpc.109.068239. Epub 2009 Sep 11.


MADS-box gene expression and implications for developmental origins of the grass spikelet.

Preston JC, Christensen A, Malcomber ST, Kellogg EA.

Am J Bot. 2009 Aug;96(8):1419-29. doi: 10.3732/ajb.0900062. Epub 2009 Jul 10.


Foxtail millet: a sequence-driven grass model system.

Doust AN, Kellogg EA, Devos KM, Bennetzen JL.

Plant Physiol. 2009 Jan;149(1):137-41. doi: 10.1104/pp.108.129627. No abstract available.


Integrating phylogeny into studies of C4 variation in the grasses.

Christin PA, Salamin N, Kellogg EA, Vicentini A, Besnard G.

Plant Physiol. 2009 Jan;149(1):82-7. doi: 10.1104/pp.108.128553. No abstract available.


Splendor in the grasses.

Kellogg EA, Buell CR.

Plant Physiol. 2009 Jan;149(1):1-3. doi: 10.1104/pp.104.900281. No abstract available.


Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited.

Beilstein MA, Al-Shehbaz IA, Mathews S, Kellogg EA.

Am J Bot. 2008 Oct;95(10):1307-27. doi: 10.3732/ajb.0800065.


Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.

Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F.

Comp Funct Genomics. 2005;6(7-8):388-97. doi: 10.1002/cfg.496.


The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.

Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D449-54. doi: 10.1093/nar/gkm908.


Molecular phylogeny of the moonseed family (Menispermaceae): implications for morphological diversification.

Ortiz Rdel C, Kellogg EA, Werff HV.

Am J Bot. 2007 Aug;94(8):1425-38. doi: 10.3732/ajb.94.8.1425.

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