Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 65

1.

Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger.

Rojas-Lopez M, Zorgani MA, Kelley LA, Bailly X, Kajava AV, Henderson IR, Polticelli F, Pizza M, Rosini R, Desvaux M.

Front Microbiol. 2018 Jan 5;8:2607. doi: 10.3389/fmicb.2017.02607. eCollection 2017.

2.

Collectively Improving Our Teaching: Attempting Biology Department-wide Professional Development in Scientific Teaching.

Owens MT, Trujillo G, Seidel SB, Harrison CD, Farrar KM, Benton HP, Blair JR, Boyer KE, Breckler JL, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen JC, Chen L, Chen LH, Chu DS, Cochlan WP, Crook RJ, Crow KD, de la Torre JR, Denetclaw WF, Dowdy LM, Franklin D, Fuse M, Goldman MA, Govindan B, Green M, Harris HE, He ZH, Ingalls SB, Ingmire P, Johnson ARB, Knight JD, LeBuhn G, Light TL, Low C, Lund L, Márquez-Magaña LM, Miller-Sims VC, Moffatt CA, Murdock H, Nusse GL, Parker VT, Pasion SG, Patterson R, Pennings PS, Ramirez JC, Ramirez RM, Riggs B, Rohlfs RV, Romeo JM, Rothman BS, Roy SW, Russo-Tait T, Sehgal RNM, Simonin KA, Spicer GS, Stillman JH, Swei A, Tempe LC, Vredenburg VT, Weinstein SL, Zink AG, Kelley LA, Domingo CR, Tanner KD.

CBE Life Sci Educ. 2018 Spring;17(1). pii: ar2. doi: 10.1187/cbe.17-06-0106. Erratum in: CBE Life Sci Educ. 2018 Spring;17 (1):.

3.

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

Waese J, Fan J, Pasha A, Yu H, Fucile G, Shi R, Cumming M, Kelley LA, Sternberg MJ, Krishnakumar V, Ferlanti E, Miller J, Town C, Stuerzlinger W, Provart NJ.

Plant Cell. 2017 Aug;29(8):1806-1821. doi: 10.1105/tpc.17.00073. Epub 2017 Aug 14.

4.

California scrub-jays reduce visual cues available to potential pilferers by matching food colour to caching substrate.

Kelley LA, Clayton NS.

Biol Lett. 2017 Jul;13(7). pii: 20170242. doi: 10.1098/rsbl.2017.0242.

PMID:
28724689
5.

How do great bowerbirds construct perspective illusions?

Kelley LA, Endler JA.

R Soc Open Sci. 2017 Jan 18;4(1):160661. doi: 10.1098/rsos.160661. eCollection 2017 Jan.

6.

Classroom sound can be used to classify teaching practices in college science courses.

Owens MT, Seidel SB, Wong M, Bejines TE, Lietz S, Perez JR, Sit S, Subedar ZS, Acker GN, Akana SF, Balukjian B, Benton HP, Blair JR, Boaz SM, Boyer KE, Bram JB, Burrus LW, Byrd DT, Caporale N, Carpenter EJ, Chan YM, Chen L, Chovnick A, Chu DS, Clarkson BK, Cooper SE, Creech C, Crow KD, de la Torre JR, Denetclaw WF, Duncan KE, Edwards AS, Erickson KL, Fuse M, Gorga JJ, Govindan B, Green LJ, Hankamp PZ, Harris HE, He ZH, Ingalls S, Ingmire PD, Jacobs JR, Kamakea M, Kimpo RR, Knight JD, Krause SK, Krueger LE, Light TL, Lund L, Márquez-Magaña LM, McCarthy BK, McPheron LJ, Miller-Sims VC, Moffatt CA, Muick PC, Nagami PH, Nusse GL, Okimura KM, Pasion SG, Patterson R, Pennings PS, Riggs B, Romeo J, Roy SW, Russo-Tait T, Schultheis LM, Sengupta L, Small R, Spicer GS, Stillman JH, Swei A, Wade JM, Waters SB, Weinstein SL, Willsie JK, Wright DW, Harrison CD, Kelley LA, Trujillo G, Domingo CR, Schinske JN, Tanner KD.

Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):3085-3090. doi: 10.1073/pnas.1618693114. Epub 2017 Mar 6.

7.

PhyreStorm: A Web Server for Fast Structural Searches Against the PDB.

Mezulis S, Sternberg MJE, Kelley LA.

J Mol Biol. 2016 Feb 22;428(4):702-708. doi: 10.1016/j.jmb.2015.10.017. Epub 2015 Oct 27.

8.

Partial protein domains: evolutionary insights and bioinformatics challenges.

Kelley LA, Sternberg MJ.

Genome Biol. 2015 May 19;16:100. doi: 10.1186/s13059-015-0663-8.

9.

The Phyre2 web portal for protein modeling, prediction and analysis.

Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ.

Nat Protoc. 2015 Jun;10(6):845-58. doi: 10.1038/nprot.2015.053. Epub 2015 May 7.

10.

Genome3D: exploiting structure to help users understand their sequences.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cozzetto D, Dana JM, Filippis I, Gough J, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mistry J, Murzin AG, Ochoa-Montaño B, Oates ME, Punta M, Rackham OJ, Stahlhacke J, Sternberg MJ, Velankar S, Orengo C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D382-6. doi: 10.1093/nar/gku973. Epub 2014 Oct 27.

11.

Impact of haemophilia with inhibitors on caregiver burden in the United States.

DeKoven M, Karkare S, Lee WC, Kelley LA, Cooper DL, Pham H, Powers J, Wisniewski T.

Haemophilia. 2014 Nov;20(6):822-30. doi: 10.1111/hae.12501. Epub 2014 Oct 2.

PMID:
25273645
12.

SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features.

Yates CM, Filippis I, Kelley LA, Sternberg MJ.

J Mol Biol. 2014 Jul 15;426(14):2692-701. doi: 10.1016/j.jmb.2014.04.026. Epub 2014 May 5.

13.

Visual effects in great bowerbird sexual displays and their implications for signal design.

Endler JA, Gaburro J, Kelley LA.

Proc Biol Sci. 2014 Apr 2;281(1783):20140235. doi: 10.1098/rspb.2014.0235. Print 2014 May 22. Erratum in: Proc Biol Sci. 2014 Jun 22;281(1785):20140864.

14.

Understanding the experience of caring for children with haemophilia: cross-sectional study of caregivers in the United States.

DeKoven M, Karkare S, Kelley LA, Cooper DL, Pham H, Powers J, Lee WC, Wisniewski T.

Haemophilia. 2014 Jul;20(4):541-9. doi: 10.1111/hae.12379. Epub 2014 Jan 29.

PMID:
24472032
15.

Validating a Coarse-Grained Potential Energy Function through Protein Loop Modelling.

Macdonald JT, Kelley LA, Freemont PS.

PLoS One. 2013 Jun 18;8(6):e65770. doi: 10.1371/journal.pone.0065770. Print 2013.

16.

High-quality protein backbone reconstruction from alpha carbons using Gaussian mixture models.

Moore BL, Kelley LA, Barber J, Murray JW, MacDonald JT.

J Comput Chem. 2013 Aug 15;34(22):1881-9. doi: 10.1002/jcc.23330. Epub 2013 May 24.

PMID:
23703289
17.

Functional assignment of Mycobacterium tuberculosis proteome revealed by genome-scale fold-recognition.

Mao C, Shukla M, Larrouy-Maumus G, Dix FL, Kelley LA, Sternberg MJ, Sobral BW, de Carvalho LP.

Tuberculosis (Edinb). 2013 Jan;93(1):40-6. doi: 10.1016/j.tube.2012.11.008. Epub 2013 Jan 1. Review.

PMID:
23287603
18.

Male great bowerbirds create forced perspective illusions with consistently different individual quality.

Kelley LA, Endler JA.

Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20980-5. doi: 10.1073/pnas.1208350109. Epub 2012 Dec 3.

19.

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30.

20.

A new structural model of the acid-labile subunit: pathogenetic mechanisms of short stature-causing mutations.

David A, Kelley LA, Sternberg MJ.

J Mol Endocrinol. 2012 Oct 12;49(3):213-20. doi: 10.1530/JME-12-0086. Print 2012 Dec.

PMID:
22991227
21.

Illusions promote mating success in great bowerbirds.

Kelley LA, Endler JA.

Science. 2012 Jan 20;335(6066):335-8. doi: 10.1126/science.1212443.

22.

Functional significance of mutations in the Snf2 domain of ATRX.

Mitson M, Kelley LA, Sternberg MJ, Higgs DR, Gibbons RJ.

Hum Mol Genet. 2011 Jul 1;20(13):2603-10. doi: 10.1093/hmg/ddr163. Epub 2011 Apr 19.

PMID:
21505078
23.

The mimetic repertoire of the spotted bowerbird Ptilonorhynchus maculatus.

Kelley LA, Healy SD.

Naturwissenschaften. 2011 Jun;98(6):501-7. doi: 10.1007/s00114-011-0794-z. Epub 2011 Apr 15.

PMID:
21494871
24.

Vocal mimicry.

Kelley LA, Healy SD.

Curr Biol. 2011 Jan 11;21(1):R9-10. doi: 10.1016/j.cub.2010.11.026. No abstract available.

25.

Transforming growth factor-β: activation by neuraminidase and role in highly pathogenic H5N1 influenza pathogenesis.

Carlson CM, Turpin EA, Moser LA, O'Brien KB, Cline TD, Jones JC, Tumpey TM, Katz JM, Kelley LA, Gauldie J, Schultz-Cherry S.

PLoS Pathog. 2010 Oct 7;6(10):e1001136. doi: 10.1371/journal.ppat.1001136.

26.

Sequencing delivers diminishing returns for homology detection: implications for mapping the protein universe.

Chubb D, Jefferys BR, Sternberg MJ, Kelley LA.

Bioinformatics. 2010 Nov 1;26(21):2664-71. doi: 10.1093/bioinformatics/btq527. Epub 2010 Sep 15.

PMID:
20843957
27.

3DLigandSite: predicting ligand-binding sites using similar structures.

Wass MN, Kelley LA, Sternberg MJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W469-73. doi: 10.1093/nar/gkq406. Epub 2010 May 31.

28.

Vocal mimicry in male bowerbirds: who learns from whom?

Kelley LA, Healy SD.

Biol Lett. 2010 Oct 23;6(5):626-9. doi: 10.1098/rsbl.2010.0093. Epub 2010 Mar 17.

29.

Protein folding requires crowd control in a simulated cell.

Jefferys BR, Kelley LA, Sternberg MJ.

J Mol Biol. 2010 Apr 16;397(5):1329-38. doi: 10.1016/j.jmb.2010.01.074. Epub 2010 Feb 10.

30.

Discovering rules for protein-ligand specificity using support vector inductive logic programming.

Kelley LA, Shrimpton PJ, Muggleton SH, Sternberg MJ.

Protein Eng Des Sel. 2009 Sep;22(9):561-7. doi: 10.1093/protein/gzp035. Epub 2009 Jul 2.

31.

Protein structure prediction on the Web: a case study using the Phyre server.

Kelley LA, Sternberg MJ.

Nat Protoc. 2009;4(3):363-71. doi: 10.1038/nprot.2009.2.

32.

Explanations for variation in cognitive ability: Behavioural ecology meets comparative cognition.

Healy SD, Bacon IE, Haggis O, Harris AP, Kelley LA.

Behav Processes. 2009 Mar;80(3):288-94. doi: 10.1016/j.beproc.2008.10.002. Epub 2008 Oct 17. Review.

PMID:
18992792
33.

Genomic analysis of closely related astroviruses.

Strain E, Kelley LA, Schultz-Cherry S, Muse SV, Koci MD.

J Virol. 2008 May;82(10):5099-103. doi: 10.1128/JVI.01993-07. Epub 2008 Mar 5.

34.

Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.

Bennett-Lovsey RM, Herbert AD, Sternberg MJ, Kelley LA.

Proteins. 2008 Feb 15;70(3):611-25.

PMID:
17876813
36.

The proteome: structure, function and evolution.

Fleming K, Kelley LA, Islam SA, MacCallum RM, Muller A, Pazos F, Sternberg MJ.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):441-51. Review.

37.

Capturing expert knowledge with argumentation: a case study in bioinformatics.

Jefferys BR, Kelley LA, Sergot MJ, Fox J, Sternberg MJ.

Bioinformatics. 2006 Apr 15;22(8):924-33. Epub 2006 Jan 29.

PMID:
16446279
38.

Evidence for TeV gamma-ray emission from a region of the galactic plane.

Atkins R, Benbow W, Berley D, Blaufuss E, Coyne DG, DeYoung T, Dingus BL, Dorfan DE, Ellsworth RW, Fleysher L, Fleysher R, Gisler G, Gonzalez MM, Goodman JA, Haines TJ, Hays E, Hoffman CM, Kelley LA, Lansdell CP, Linnemann JT, McEnery JE, Miller RS, Mincer AI, Morales MF, Nemethy P, Noyes D, Ryan JM, Samuelson FW, Parkinson PM, Shoup A, Sinnis G, Smith AJ, Sullivan GW, Williams DA, Wilson ME, Xu XW, Yodh GB.

Phys Rev Lett. 2005 Dec 16;95(25):251103. Epub 2005 Dec 16.

PMID:
16384445
39.

The extent and importance of intragenic recombination.

de Silva E, Kelley LA, Stumpf MP.

Hum Genomics. 2004 Nov;1(6):410-20.

41.

Development of a multiplex reverse transcription-polymerase chain reaction diagnostic test specific for turkey astrovirus and coronavirus.

Sellers HS, Koci MD, Linnemann E, Kelley LA, Schultz-Cherry S.

Avian Dis. 2004 Sep;48(3):531-9.

PMID:
15529975
42.

Alleviation of erythromelalgia with venlafaxine.

DiCaudo DJ, Kelley LA.

Arch Dermatol. 2004 May;140(5):621-3. No abstract available.

PMID:
15148116
43.

Increased levels of urokinase plasminogen activator receptor in prostate cancer cells derived from repeated metastasis.

Forbes K, Gillette K, Kelley LA, Sehgal I.

World J Urol. 2004 Apr;22(1):67-71. Epub 2004 Mar 30.

PMID:
15052500
44.

Astrovirus-induced synthesis of nitric oxide contributes to virus control during infection.

Koci MD, Kelley LA, Larsen D, Schultz-Cherry S.

J Virol. 2004 Feb;78(3):1564-74.

45.

Astrovirus induces diarrhea in the absence of inflammation and cell death.

Koci MD, Moser LA, Kelley LA, Larsen D, Brown CC, Schultz-Cherry S.

J Virol. 2003 Nov;77(21):11798-808.

46.

Predicting the sub-cellular location of proteins from text using support vector machines.

Stapley BJ, Kelley LA, Sternberg MJ.

Pac Symp Biocomput. 2002:374-85.

47.

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

Bates PA, Kelley LA, MacCallum RM, Sternberg MJ.

Proteins. 2001;Suppl 5:39-46.

PMID:
11835480
48.

On John Allen's critique of induction.

Kelley LA, Scott M.

Bioessays. 2001 Sep;23(9):860-1; author reply 861-2. No abstract available.

PMID:
11536299
49.

Enhanced genome annotation using structural profiles in the program 3D-PSSM.

Kelley LA, MacCallum RM, Sternberg MJ.

J Mol Biol. 2000 Jun 2;299(2):499-520.

PMID:
10860755
50.

Supplemental Content

Loading ...
Support Center