Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 40

1.

Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance.

Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR.

Mol Cell Proteomics. 2019 Jun;18(6):1157-1170. doi: 10.1074/mcp.RA119.001378. Epub 2019 Mar 27.

2.

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk.

Reshef YA, Finucane HK, Kelley DR, Gusev A, Kotliar D, Ulirsch JC, Hormozdiari F, Nasser J, O'Connor L, van de Geijn B, Loh PR, Grossman SR, Bhatia G, Gazal S, Palamara PF, Pinello L, Patterson N, Adams RP, Price AL.

Nat Genet. 2018 Oct;50(10):1483-1493. doi: 10.1038/s41588-018-0196-7. Epub 2018 Sep 3.

3.

Sequential regulatory activity prediction across chromosomes with convolutional neural networks.

Kelley DR, Reshef YA, Bileschi M, Belanger D, McLean CY, Snoek J.

Genome Res. 2018 May;28(5):739-750. doi: 10.1101/gr.227819.117. Epub 2018 Mar 27.

4.

E3 Ubiquitin Ligases: Key Regulators of Hormone Signaling in Plants.

Kelley DR.

Mol Cell Proteomics. 2018 Jun;17(6):1047-1054. doi: 10.1074/mcp.MR117.000476. Epub 2018 Mar 7. Review.

5.

Genetic determinants and epigenetic effects of pioneer-factor occupancy.

Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford CA, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A.

Nat Genet. 2018 Feb;50(2):250-258. doi: 10.1038/s41588-017-0034-3. Epub 2018 Jan 22.

6.

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation.

Delás MJ, Sabin LR, Dolzhenko E, Knott SR, Munera Maravilla E, Jackson BT, Wild SA, Kovacevic T, Stork EM, Zhou M, Erard N, Lee E, Kelley DR, Roth M, Barbosa IA, Zuber J, Rinn JL, Smith AD, Hannon GJ.

Elife. 2017 Sep 6;6. pii: e25607. doi: 10.7554/eLife.25607.

7.

Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma.

Feigin ME, Garvin T, Bailey P, Waddell N, Chang DK, Kelley DR, Shuai S, Gallinger S, McPherson JD, Grimmond SM, Khurana E, Stein LD, Biankin AV, Schatz MC, Tuveson DA.

Nat Genet. 2017 Jun;49(6):825-833. doi: 10.1038/ng.3861. Epub 2017 May 8.

8.

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks.

Kelley DR, Snoek J, Rinn JL.

Genome Res. 2016 Jul;26(7):990-9. doi: 10.1101/gr.200535.115. Epub 2016 May 3.

9.

Widespread RNA binding by chromatin-associated proteins.

G Hendrickson D, Kelley DR, Tenen D, Bernstein B, Rinn JL.

Genome Biol. 2016 Feb 16;17:28. doi: 10.1186/s13059-016-0878-3.

10.

Lysine Residues Are Not Required for Proteasome-Mediated Proteolysis of the Auxin/Indole Acidic Acid Protein IAA1.

Gilkerson J, Kelley DR, Tam R, Estelle M, Callis J.

Plant Physiol. 2015 Jun;168(2):708-20. doi: 10.1104/pp.15.00402. Epub 2015 Apr 17.

11.

Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions.

Kelley DR, Hendrickson DG, Tenen D, Rinn JL.

Genome Biol. 2014 Dec 3;15(12):537. doi: 10.1186/s13059-014-0537-5.

12.

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.

Hacisuleyman E, Goff LA, Trapnell C, Williams A, Henao-Mejia J, Sun L, McClanahan P, Hendrickson DG, Sauvageau M, Kelley DR, Morse M, Engreitz J, Lander ES, Guttman M, Lodish HF, Flavell R, Raj A, Rinn JL.

Nat Struct Mol Biol. 2014 Feb;21(2):198-206. doi: 10.1038/nsmb.2764. Epub 2014 Jan 26.

13.

Transcriptional and epigenetic dynamics during specification of human embryonic stem cells.

Gifford CA, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, Shalek AK, Kelley DR, Shishkin AA, Issner R, Zhang X, Coyne M, Fostel JL, Holmes L, Meldrim J, Guttman M, Epstein C, Park H, Kohlbacher O, Rinn J, Gnirke A, Lander ES, Bernstein BE, Meissner A.

Cell. 2013 May 23;153(5):1149-63. doi: 10.1016/j.cell.2013.04.037. Epub 2013 May 9.

14.

Long noncoding RNAs regulate adipogenesis.

Sun L, Goff LA, Trapnell C, Alexander R, Lo KA, Hacisuleyman E, Sauvageau M, Tazon-Vega B, Kelley DR, Hendrickson DG, Yuan B, Kellis M, Lodish HF, Rinn JL.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3387-92. doi: 10.1073/pnas.1222643110. Epub 2013 Feb 11.

15.

Mis-assembled "segmental duplications" in two versions of the Bos taurus genome.

Zimin AV, Kelley DR, Roberts M, Marçais G, Salzberg SL, Yorke JA.

PLoS One. 2012;7(8):e42680. doi: 10.1371/journal.pone.0042680. Epub 2012 Aug 3.

16.

Ubiquitin-mediated control of plant hormone signaling.

Kelley DR, Estelle M.

Plant Physiol. 2012 Sep;160(1):47-55. doi: 10.1104/pp.112.200527. Epub 2012 Jun 21. No abstract available.

17.

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.

Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L.

Nat Protoc. 2012 Mar 1;7(3):562-78. doi: 10.1038/nprot.2012.016. Erratum in: Nat Protoc. 2014 Oct;9(10):2513.

18.

ETTIN (ARF3) physically interacts with KANADI proteins to form a functional complex essential for integument development and polarity determination in Arabidopsis.

Kelley DR, Arreola A, Gallagher TL, Gasser CS.

Development. 2012 Mar;139(6):1105-9. doi: 10.1242/dev.067918. Epub 2012 Feb 1.

19.

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering.

Kelley DR, Liu B, Delcher AL, Pop M, Salzberg SL.

Nucleic Acids Res. 2012 Jan;40(1):e9. doi: 10.1093/nar/gkr1067. Epub 2011 Nov 18.

20.

Assemblathon 1: a competitive assessment of de novo short read assembly methods.

Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B.

Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16.

21.

Extracting between-pathway models from E-MAP interactions using expected graph compression.

Kelley DR, Kingsford C.

J Comput Biol. 2011 Mar;18(3):379-90. doi: 10.1089/cmb.2010.0268.

PMID:
21385041
22.

Quake: quality-aware detection and correction of sequencing errors.

Kelley DR, Schatz MC, Salzberg SL.

Genome Biol. 2010;11(11):R116. doi: 10.1186/gb-2010-11-11-r116. Epub 2010 Nov 29.

23.

Clustering metagenomic sequences with interpolated Markov models.

Kelley DR, Salzberg SL.

BMC Bioinformatics. 2010 Nov 2;11:544. doi: 10.1186/1471-2105-11-544.

24.

Investigating the function of CAF1 deadenylases during plant stress responses.

Walley JW, Kelley DR, Savchenko T, Dehesh K.

Plant Signal Behav. 2010 Jul;5(7):802-5. Epub 2010 Jul 1. Review.

25.

Detection and correction of false segmental duplications caused by genome mis-assembly.

Kelley DR, Salzberg SL.

Genome Biol. 2010;11(3):R28. doi: 10.1186/gb-2010-11-3-r28. Epub 2010 Mar 10.

26.

Ovule development: genetic trends and evolutionary considerations.

Kelley DR, Gasser CS.

Sex Plant Reprod. 2009 Dec;22(4):229-34. doi: 10.1007/s00497-009-0107-2. Epub 2009 Aug 9. Review.

27.

Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.

Walley JW, Kelley DR, Nestorova G, Hirschberg DL, Dehesh K.

Plant Physiol. 2010 Feb;152(2):866-75. doi: 10.1104/pp.109.149005. Epub 2009 Dec 2.

28.

A whole-genome assembly of the domestic cow, Bos taurus.

Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL.

Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24.

29.

Roles of polarity determinants in ovule development.

Kelley DR, Skinner DJ, Gasser CS.

Plant J. 2009 Mar;57(6):1054-64. doi: 10.1111/j.1365-313X.2008.03752.x. Epub 2008 Nov 26.

30.

Medicaid DRG system being improved for Texas children.

Bellamy GR, Svadlenak SR, Peters R, Kelley DR.

Tex Hosp. 1987 Jun;43(1):14-5. No abstract available.

PMID:
10312095
31.
32.

Prognostic value of purified protein derivative skin test and granuloma formation in patients treated with intravesical bacillus Calmette-Guerin.

Kelley DR, Haaff EO, Becich M, Lage J, Bauer WC, Dresner SM, Catalona WJ, Ratliff TL.

J Urol. 1986 Feb;135(2):268-71.

PMID:
3511285
33.

Intravesical bacillus Calmette-Guerin therapy for superficial bladder cancer: effect of bacillus Calmette-Guerin viability on treatment results.

Kelley DR, Ratliff TL, Catalona WJ, Shapiro A, Lage JM, Bauer WC, Haaff EO, Dresner SM.

J Urol. 1985 Jul;134(1):48-53.

PMID:
3892051
34.

Heightened interferon-gamma production by mononuclear cells from bladder cancer patients.

Shapiro A, Ratliff TL, Kelley DR, Catalona WJ.

Cancer Res. 1984 Jul;44(7):3140-3.

35.
36.

The science of anthropology: an essay on the very old Marx.

Kelley DR.

J Hist Ideas. 1984 Apr-Jun;45(2):245-62. No abstract available.

PMID:
11615961
37.

Aggression anxiety and cognitive appraisal of aggression-threat stimuli.

Geen RG, Stonner D, Kelley DR.

J Pers Soc Psychol. 1974 Feb;29(2):196-200. No abstract available.

PMID:
4814809
38.

Effects of attitude-similarity and success-failure upon attitude toward other persons.

Harvey JH, Kelley DR.

J Soc Psychol. 1973 Jun;90(1):105-14. No abstract available.

PMID:
4706614

Supplemental Content

Loading ...
Support Center