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Items: 15

1.

Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly, Sarcophaga bullata.

Martinson EO, Peyton J, Kelkar YD, Jennings EC, Benoit JB, Werren JH, Denlinger DL.

G3 (Bethesda). 2019 May 7;9(5):1313-1320. doi: 10.1534/g3.119.400148.

2.

SUBSTRA: Supervised Bayesian Patient Stratification.

Khakabimamaghani S, Kelkar YD, Grande BM, Morin RD, Ester M, Ziemek D.

Bioinformatics. 2019 Sep 15;35(18):3263-3272. doi: 10.1093/bioinformatics/btz112.

PMID:
30768166
3.

Evaluating the evolution and function of the dynamic Venom Y protein in ectoparasitoid wasps.

Martinson EO, Siebert AL, He M, Kelkar YD, Doucette LA, Werren JH.

Insect Mol Biol. 2019 Aug;28(4):499-508. doi: 10.1111/imb.12565. Epub 2019 Feb 5.

PMID:
30636014
4.

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum.

Lindsey ARI, Kelkar YD, Wu X, Sun D, Martinson EO, Yan Z, Rugman-Jones PF, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni HV, Worley KC, Muzny DM, Ye G, Gibbs RA, Richards S, Yi SV, Stouthamer R, Werren JH.

BMC Biol. 2018 May 18;16(1):54. doi: 10.1186/s12915-018-0520-9.

5.

High-dimensional linear state space models for dynamic microbial interaction networks.

Chen I, Kelkar YD, Gu Y, Zhou J, Qiu X, Wu H.

PLoS One. 2017 Nov 15;12(11):e0187822. doi: 10.1371/journal.pone.0187822. eCollection 2017.

6.

The Evolution of Venom by Co-option of Single-Copy Genes.

Martinson EO, Mrinalini, Kelkar YD, Chang CH, Werren JH.

Curr Biol. 2017 Jul 10;27(13):2007-2013.e8. doi: 10.1016/j.cub.2017.05.032. Epub 2017 Jun 22.

7.

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.

Rago A, Gilbert DG, Choi JH, Sackton TB, Wang X, Kelkar YD, Werren JH, Colbourne JK.

BMC Genomics. 2016 Aug 25;17:678. doi: 10.1186/s12864-016-2886-9.

8.

Comparative Genomics of Two Closely Related Wolbachia with Different Reproductive Effects on Hosts.

Newton IL, Clark ME, Kent BN, Bordenstein SR, Qu J, Richards S, Kelkar YD, Werren JH.

Genome Biol Evol. 2016 Jun 3;8(5):1526-42. doi: 10.1093/gbe/evw096.

9.

Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes.

Kelkar YD, Phillips DS, Ochman H.

G3 (Bethesda). 2015 Apr 20;5(6):1247-52. doi: 10.1534/g3.115.016824. Erratum in: G3 (Bethesda). 2015 Dec;5(12):2921.

10.

Genome reduction promotes increase in protein functional complexity in bacteria.

Kelkar YD, Ochman H.

Genetics. 2013 Jan;193(1):303-7. doi: 10.1534/genetics.112.145656. Epub 2012 Oct 31.

11.

A selective force favoring increased G+C content in bacterial genes.

Raghavan R, Kelkar YD, Ochman H.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14504-7. doi: 10.1073/pnas.1205683109. Epub 2012 Aug 20.

12.

Causes and consequences of genome expansion in fungi.

Kelkar YD, Ochman H.

Genome Biol Evol. 2012;4(1):13-23. doi: 10.1093/gbe/evr124. Epub 2011 Nov 24.

13.

A matter of life or death: how microsatellites emerge in and vanish from the human genome.

Kelkar YD, Eckert KA, Chiaromonte F, Makova KD.

Genome Res. 2011 Dec;21(12):2038-48. doi: 10.1101/gr.122937.111. Epub 2011 Oct 12.

14.

What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats.

Kelkar YD, Strubczewski N, Hile SE, Chiaromonte F, Eckert KA, Makova KD.

Genome Biol Evol. 2010;2:620-35. doi: 10.1093/gbe/evq046. Epub 2010 Jul 28.

15.

The genome-wide determinants of human and chimpanzee microsatellite evolution.

Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD.

Genome Res. 2008 Jan;18(1):30-8. Epub 2007 Nov 21.

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