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Items: 43

1.

Reinstating plasticity and memory in a tauopathy mouse model with an acetyltransferase activator.

Chatterjee S, Cassel R, Schneider-Anthony A, Merienne K, Cosquer B, Tzeplaeff L, Halder Sinha S, Kumar M, Chaturbedy P, Eswaramoorthy M, Le Gras S, Keime C, Bousiges O, Dutar P, Petsophonsakul P, Rampon C, Cassel JC, Buée L, Blum D, Kundu TK, Boutillier AL.

EMBO Mol Med. 2018 Oct 1. pii: e8587. doi: 10.15252/emmm.201708587. [Epub ahead of print]

2.

Genes and Pathways Regulated by Androgens in Human Neural Cells, Potential Candidates for the Male Excess in Autism Spectrum Disorder.

Quartier A, Chatrousse L, Redin C, Keime C, Haumesser N, Maglott-Roth A, Brino L, Le Gras S, Benchoua A, Mandel JL, Piton A.

Biol Psychiatry. 2018 Aug 15;84(4):239-252. doi: 10.1016/j.biopsych.2018.01.002. Epub 2018 Jan 9.

PMID:
29428674
3.

Sphingolipid Metabolism Is Dysregulated at Transcriptomic and Metabolic Levels in the Spinal Cord of an Animal Model of Amyotrophic Lateral Sclerosis.

Henriques A, Croixmarie V, Bouscary A, Mosbach A, Keime C, Boursier-Neyret C, Walter B, Spedding M, Loeffler JP.

Front Mol Neurosci. 2018 Jan 4;10:433. doi: 10.3389/fnmol.2017.00433. eCollection 2017.

4.

Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer.

Cottard F, Madi-Berthélémy PO, Erdmann E, Schaff-Wendling F, Keime C, Ye T, Kurtz JE, Céraline J.

Oncotarget. 2017 May 29;8(42):72008-72020. doi: 10.18632/oncotarget.18270. eCollection 2017 Sep 22.

5.

MITF-High and MITF-Low Cells and a Novel Subpopulation Expressing Genes of Both Cell States Contribute to Intra- and Intertumoral Heterogeneity of Primary Melanoma.

Ennen M, Keime C, Gambi G, Kieny A, Coassolo S, Thibault-Carpentier C, Margerin-Schaller F, Davidson G, Vagne C, Lipsker D, Davidson I.

Clin Cancer Res. 2017 Nov 15;23(22):7097-7107. doi: 10.1158/1078-0432.CCR-17-0010. Epub 2017 Aug 28.

PMID:
28855355
6.

Inhibition of β-Glucocerebrosidase Activity Preserves Motor Unit Integrity in a Mouse Model of Amyotrophic Lateral Sclerosis.

Henriques A, Huebecker M, Blasco H, Keime C, Andres CR, Corcia P, Priestman DA, Platt FM, Spedding M, Loeffler JP.

Sci Rep. 2017 Jul 12;7(1):5235. doi: 10.1038/s41598-017-05313-0.

7.

The Bile Acid Nuclear Receptor FXRα Is a Critical Regulator of Mouse Germ Cell Fate.

Martinot E, Sèdes L, Baptissart M, Holota H, Rouaisnel B, Damon-Soubeyrand C, De Haze A, Saru JP, Thibault-Carpentier C, Keime C, Lobaccaro JA, Baron S, Benoit G, Caira F, Beaudoin C, Volle DH.

Stem Cell Reports. 2017 Jul 11;9(1):315-328. doi: 10.1016/j.stemcr.2017.05.036. Epub 2017 Jun 29.

8.

Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature.

Le Gras S, Keime C, Anthony A, Lotz C, De Longprez L, Brouillet E, Cassel JC, Boutillier AL, Merienne K.

Sci Rep. 2017 Feb 22;7:42875. doi: 10.1038/srep42875.

9.

Extensive Regulation of Diurnal Transcription and Metabolism by Glucocorticoids.

Weger BD, Weger M, Görling B, Schink A, Gobet C, Keime C, Poschet G, Jost B, Krone N, Hell R, Gachon F, Luy B, Dickmeis T.

PLoS Genet. 2016 Dec 12;12(12):e1006512. doi: 10.1371/journal.pgen.1006512. eCollection 2016 Dec.

10.

Enterocyte Purge and Rapid Recovery Is a Resilience Reaction of the Gut Epithelium to Pore-Forming Toxin Attack.

Lee KZ, Lestradet M, Socha C, Schirmeier S, Schmitz A, Spenlé C, Lefebvre O, Keime C, Yamba WM, Bou Aoun R, Liegeois S, Schwab Y, Simon-Assmann P, Dalle F, Ferrandon D.

Cell Host Microbe. 2016 Dec 14;20(6):716-730. doi: 10.1016/j.chom.2016.10.010. Epub 2016 Nov 23.

11.

B cells differentiate in human thymus and express AIRE.

Gies V, Guffroy A, Danion F, Billaud P, Keime C, Fauny JD, Susini S, Soley A, Martin T, Pasquali JL, Gros F, André-Schmutz I, Soulas-Sprauel P, Korganow AS.

J Allergy Clin Immunol. 2017 Mar;139(3):1049-1052.e12. doi: 10.1016/j.jaci.2016.09.044. Epub 2016 Nov 15. No abstract available.

PMID:
27864026
12.

Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level.

Helwi P, Guillaumie S, Thibon C, Keime C, Habran A, Hilbert G, Gomes E, Darriet P, Delrot S, van Leeuwen C.

BMC Plant Biol. 2016 Aug 8;16(1):173. doi: 10.1186/s12870-016-0836-y.

13.

Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions.

Demais V, Barthélémy A, Perraut M, Ungerer N, Keime C, Reibel S, Pfrieger FW.

J Neurosci. 2016 Jul 27;36(30):8012-25. doi: 10.1523/JNEUROSCI.0900-16.2016.

14.

Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation.

Langer D, Martianov I, Alpern D, Rhinn M, Keime C, Dollé P, Mengus G, Davidson I.

Nat Commun. 2016 Mar 30;7:11063. doi: 10.1038/ncomms11063.

15.

Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells.

de Dieuleveult M, Yen K, Hmitou I, Depaux A, Boussouar F, Bou Dargham D, Jounier S, Humbertclaude H, Ribierre F, Baulard C, Farrell NP, Park B, Keime C, Carrière L, Berlivet S, Gut M, Gut I, Werner M, Deleuze JF, Olaso R, Aude JC, Chantalat S, Pugh BF, Gérard M.

Nature. 2016 Feb 4;530(7588):113-6. doi: 10.1038/nature16505. Epub 2016 Jan 27.

16.

Chromatin-Remodelling Complex NURF Is Essential for Differentiation of Adult Melanocyte Stem Cells.

Koludrovic D, Laurette P, Strub T, Keime C, Le Coz M, Coassolo S, Mengus G, Larue L, Davidson I.

PLoS Genet. 2015 Oct 6;11(10):e1005555. doi: 10.1371/journal.pgen.1005555. eCollection 2015 Oct.

17.

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells.

Laurette P, Strub T, Koludrovic D, Keime C, Le Gras S, Seberg H, Van Otterloo E, Imrichova H, Siddaway R, Aerts S, Cornell RA, Mengus G, Davidson I.

Elife. 2015 Mar 24;4. doi: 10.7554/eLife.06857.

18.

Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice.

Achour M, Le Gras S, Keime C, Parmentier F, Lejeune FX, Boutillier AL, Néri C, Davidson I, Merienne K.

Hum Mol Genet. 2015 Jun 15;24(12):3481-96. doi: 10.1093/hmg/ddv099. Epub 2015 Mar 17.

PMID:
25784504
19.

No evidence for generation of alternatively spliced isoforms from the mutated Trim24 allele lacking exon 4 in mouse liver.

Herquel B, Keime C, Davidson I.

J Hepatol. 2015 Jul;63(1):276-7. doi: 10.1016/j.jhep.2015.02.021. Epub 2015 Feb 19. No abstract available.

20.

Rfx6 maintains the functional identity of adult pancreatic β cells.

Piccand J, Strasser P, Hodson DJ, Meunier A, Ye T, Keime C, Birling MC, Rutter GA, Gradwohl G.

Cell Rep. 2014 Dec 24;9(6):2219-32. doi: 10.1016/j.celrep.2014.11.033. Epub 2014 Dec 11.

21.

Single-cell gene expression signatures reveal melanoma cell heterogeneity.

Ennen M, Keime C, Kobi D, Mengus G, Lipsker D, Thibault-Carpentier C, Davidson I.

Oncogene. 2015 Jun;34(25):3251-63. doi: 10.1038/onc.2014.262. Epub 2014 Aug 18.

PMID:
25132268
22.

Phosphorylation of the retinoic acid receptor RARγ2 is crucial for the neuronal differentiation of mouse embryonic stem cells.

Al Tanoury Z, Gaouar S, Piskunov A, Ye T, Urban S, Jost B, Keime C, Davidson I, Dierich A, Rochette-Egly C.

J Cell Sci. 2014 May 1;127(Pt 9):2095-105. doi: 10.1242/jcs.145979. Epub 2014 Feb 25.

23.

Genes involved in cell adhesion and signaling: a new repertoire of retinoic acid receptor target genes in mouse embryonic fibroblasts.

Al Tanoury Z, Piskunov A, Andriamoratsiresy D, Gaouar S, Lutzing R, Ye T, Jost B, Keime C, Rochette-Egly C.

J Cell Sci. 2014 Feb 1;127(Pt 3):521-33. doi: 10.1242/jcs.131946. Epub 2013 Dec 19.

24.

Genetic analysis of the biosynthesis of 2-methoxy-3-isobutylpyrazine, a major grape-derived aroma compound impacting wine quality.

Guillaumie S, Ilg A, Réty S, Brette M, Trossat-Magnin C, Decroocq S, Léon C, Keime C, Ye T, Baltenweck-Guyot R, Claudel P, Bordenave L, Vanbrabant S, Duchêne E, Delrot S, Darriet P, Hugueney P, Gomès E.

Plant Physiol. 2013 Jun;162(2):604-15. doi: 10.1104/pp.113.218313. Epub 2013 Apr 19.

25.

Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA.

Herquel B, Ouararhni K, Martianov I, Le Gras S, Ye T, Keime C, Lerouge T, Jost B, Cammas F, Losson R, Davidson I.

Nat Struct Mol Biol. 2013 Mar;20(3):339-46. doi: 10.1038/nsmb.2496. Epub 2013 Feb 3.

PMID:
23377542
26.

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.

Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium.

Brief Bioinform. 2013 Nov;14(6):671-83. doi: 10.1093/bib/bbs046. Epub 2012 Sep 17.

PMID:
22988256
27.

Selective upregulation of lipid metabolism in skeletal muscle of foraging juvenile king penguins: an integrative study.

Teulier L, Dégletagne C, Rey B, Tornos J, Keime C, de Dinechin M, Raccurt M, Rouanet JL, Roussel D, Duchamp C.

Proc Biol Sci. 2012 Jun 22;279(1737):2464-72. doi: 10.1098/rspb.2011.2664. Epub 2012 Feb 22.

28.

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Carrière L, Graziani S, Alibert O, Ghavi-Helm Y, Boussouar F, Humbertclaude H, Jounier S, Aude JC, Keime C, Murvai J, Foglio M, Gut M, Gut I, Lathrop M, Soutourina J, Gérard M, Werner M.

Nucleic Acids Res. 2012 Jan;40(1):270-83. doi: 10.1093/nar/gkr737. Epub 2011 Sep 12.

29.

Transcription factor TEAD4 regulates expression of myogenin and the unfolded protein response genes during C2C12 cell differentiation.

Benhaddou A, Keime C, Ye T, Morlon A, Michel I, Jost B, Mengus G, Davidson I.

Cell Death Differ. 2012 Feb;19(2):220-31. doi: 10.1038/cdd.2011.87. Epub 2011 Jun 24.

30.

Essential role of microphthalmia transcription factor for DNA replication, mitosis and genomic stability in melanoma.

Strub T, Giuliano S, Ye T, Bonet C, Keime C, Kobi D, Le Gras S, Cormont M, Ballotti R, Bertolotto C, Davidson I.

Oncogene. 2011 May 19;30(20):2319-32. doi: 10.1038/onc.2010.612. Epub 2011 Jan 24.

PMID:
21258399
31.

seqMINER: an integrated ChIP-seq data interpretation platform.

Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L.

Nucleic Acids Res. 2011 Mar;39(6):e35. doi: 10.1093/nar/gkq1287. Epub 2010 Dec 21.

32.

Novel genes differentially expressed between posterior and median silk gland identified by SAGE-aided transcriptome analysis.

Royer C, Briolay J, Garel A, Brouilly P, Sasanuma S, Sasanuma M, Shimomura M, Keime C, Gandrillon O, Huang Y, Chavancy G, Mita K, Couble P.

Insect Biochem Mol Biol. 2011 Feb;41(2):118-24. doi: 10.1016/j.ibmb.2010.11.003. Epub 2010 Nov 13.

PMID:
21078388
33.

Sensitivity and gene expression profile of fresh human acute myeloid leukemia cells exposed ex vivo to AS602868.

Jordheim LP, Plesa A, Dreano M, Cros-Perrial E, Keime C, Herveau S, Demangel D, Vendrell JA, Dumontet C.

Cancer Chemother Pharmacol. 2011 Jul;68(1):97-105. doi: 10.1007/s00280-010-1458-y. Epub 2010 Sep 16.

PMID:
20844879
34.

Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays.

Degletagne C, Keime C, Rey B, de Dinechin M, Forcheron F, Chuchana P, Jouventin P, Gautier C, Duchamp C.

BMC Genomics. 2010 May 31;11:344. doi: 10.1186/1471-2164-11-344.

35.

mTOR inhibition reverses acquired endocrine therapy resistance of breast cancer cells at the cell proliferation and gene-expression levels.

Ghayad SE, Bieche I, Vendrell JA, Keime C, Lidereau R, Dumontet C, Cohen PA.

Cancer Sci. 2008 Oct;99(10):1992-2003. doi: 10.1111/j.1349-7006.2008.00955.x.

36.

SQUAT: A web tool to mine human, murine and avian SAGE data.

Leyritz J, Schicklin S, Blachon S, Keime C, Robardet C, Boulicaut JF, Besson J, Pensa RG, Gandrillon O.

BMC Bioinformatics. 2008 Sep 18;9:378. doi: 10.1186/1471-2105-9-378.

37.

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome.

Hanriot L, Keime C, Gay N, Faure C, Dossat C, Wincker P, Scoté-Blachon C, Peyron C, Gandrillon O.

BMC Genomics. 2008 Sep 16;9:418. doi: 10.1186/1471-2164-9-418.

38.

Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action.

Bresson C, Keime C, Faure C, Letrillard Y, Barbado M, Sanfilippo S, Benhra N, Gandrillon O, Gonin-Giraud S.

BMC Genomics. 2007 Oct 26;8:390.

39.

Unexpected observations after mapping LongSAGE tags to the human genome.

Keime C, Sémon M, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2007 May 15;8:154.

40.

SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion.

Rosinski-Chupin I, Briolay J, Brouilly P, Perrot S, Gomez SM, Chertemps T, Roth CW, Keime C, Gandrillon O, Couble P, Brey PT.

Cell Microbiol. 2007 Mar;9(3):708-24. Epub 2006 Oct 18.

PMID:
17054438
41.

Serial analysis of gene expression in the silkworm, Bombyx mori.

Huang J, Miao X, Jin W, Couble P, Mita K, Zhang Y, Liu W, Zhuang L, Shen Y, Keime C, Gandrillon O, Brouilly P, Briolay J, Zhao G, Huang Y.

Genomics. 2005 Aug;86(2):233-41.

PMID:
15963683
42.

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2004 Oct 6;5:143.

43.

Global transcription analysis of immature avian erythrocytic progenitors: from self-renewal to differentiation.

Damiola F, Keime C, Gonin-Giraud S, Dazy S, Gandrillon O.

Oncogene. 2004 Oct 7;23(46):7628-43.

PMID:
15378009

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