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Items: 1 to 50 of 97

1.

Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients.

Birdsell DN, Özsürekci Y, Rawat A, Aycan AE, Mitchell CL, Sahl JW, Johansson A, Colman RE, Schupp JM, Ceyhan M, Keim PS, Wagner DM.

BMC Infect Dis. 2018 Jul 11;18(1):319. doi: 10.1186/s12879-018-3218-2.

2.

Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome.

Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, Foster JT.

MBio. 2017 Dec 12;8(6). pii: e01941-17. doi: 10.1128/mBio.01941-17.

3.

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model.

Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN.

PLoS Negl Trop Dis. 2017 Dec 11;11(12):e0006077. doi: 10.1371/journal.pntd.0006077. eCollection 2017 Dec.

4.

Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.

Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW.

PLoS One. 2017 Aug 30;12(8):e0183478. doi: 10.1371/journal.pone.0183478. eCollection 2017.

5.

AOAC SMPR 2016.010.

Gee J, Arce J, Beck LC, Blank TR, Blyn L, Cahall R, Clark AJ, Currie B, Damer K, Davenport M, DeShazer D, Johns M, Keim PS, Kiss K, Lesho M, Lin N, Morse SA, Naraghi-Arani P, Ozanich R, Roberto F, Rozak D, Sahl J, Schaefer F, Schutzer S, Schweizer HP, Sozhamannan S, Tuanyok A, Coates S.

J AOAC Int. 2017 Jan 1;100(1):261-265. doi: 10.5740/jaoacint.SMPR2016.010. No abstract available.

PMID:
28825553
6.

Unexpected Relations of Historical Anthrax Strain.

Antwerpen MH, Sahl JW, Birdsell D, Pearson T, Pearce MJ, Redmond C, Meyer H, Keim PS.

MBio. 2017 Apr 25;8(2). pii: e00440-17. doi: 10.1128/mBio.00440-17.

7.

Time to Worry about Anthrax Again.

Keim PS, Walker DH, Zilinskas RA.

Sci Am. 2017 Mar 14;316(4):70-75. doi: 10.1038/scientificamerican0417-70. No abstract available.

PMID:
28296844
8.

Development of Immunoassays for Burkholderia pseudomallei Typical and Atypical Lipopolysaccharide Strain Typing.

Nualnoi T, Norris MH, Tuanyok A, Brett PJ, Burtnick MN, Keim PS, Settles EW, Allender CJ, AuCoin DP.

Am J Trop Med Hyg. 2017 Feb 8;96(2):358-367. doi: 10.4269/ajtmh.16-0308. Epub 2016 Dec 19.

9.

Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution.

Shabbir M, Aleem M, Javed S, Wagner DM, Keim PS, Eqani SA, Bokhari H.

J Infect Dev Ctries. 2016 Aug 2;10(7):687-93. doi: 10.3855/jidc.7091. Review.

10.

AOAC SMPR(®) 2016.007.

Keim PS, Wagner D, Appler J, Bauer T, Beck L, Boylan J, Cahall R, Damer K, Davenport M, Forsman M, Hinrichs SH, Kiss K, Maple L, Morse SA, Naraghi-Arani P, Petersen J, Pettit D, Retford M, Scheckelhoff M, Shah S, Sozhamannan S, Coates SG.

J AOAC Int. 2016 Jul;99(4):1090-1094. doi: 10.5740/jaoacint.SMPR2016.007. No abstract available.

PMID:
27455937
11.

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach.

Leiser OP, Merkley ED, Clowers BH, Deatherage Kaiser BL, Lin A, Hutchison JR, Melville AM, Wagner DM, Keim PS, Foster JT, Kreuzer HW.

PLoS One. 2015 Nov 24;10(11):e0142997. doi: 10.1371/journal.pone.0142997. eCollection 2015.

12.

Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics.

Califf KJ, Keim PS, Wagner DM, Sahl JW.

Microb Genom. 2015 Aug 3;1(2):e000028. doi: 10.1099/mgen.0.000028. eCollection 2015 Aug.

13.

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS.

PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015.

14.

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks.

Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, Moritz RL, Wilmes P.

NPJ Biofilms Microbiomes. 2015 Jun 17;1:15007. doi: 10.1038/npjbiofilms.2015.7. eCollection 2015.

15.

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.

Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, Guignard C, Schupp JM, Vlassis N, Baliga NS, Moritz RL, Keim PS, Wilmes P.

Nat Commun. 2014 Nov 26;5:5603. doi: 10.1038/ncomms6603.

16.

Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden.

Wahab T, Birdsell DN, Hjertqvist M, Mitchell CL, Wagner DM, Keim PS, Hedenström I, Löfdahl S.

PLoS One. 2014 Nov 17;9(11):e112167. doi: 10.1371/journal.pone.0112167. eCollection 2014.

17.

Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.

Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS.

MBio. 2014 Nov 4;5(6):e01721. doi: 10.1128/mBio.01721-14.

18.

Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events.

Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, Witte A, Wernery U.

PLoS Negl Trop Dis. 2014 Sep 25;8(9):e3195. doi: 10.1371/journal.pntd.0003195. eCollection 2014 Sep.

19.

Yersinia pestis and the three plague pandemics--authors' reply.

Wagner DM, Keim PS, Scholz HC, Holmes EC, Poinar H.

Lancet Infect Dis. 2014 Oct;14(10):919. doi: 10.1016/S1473-3099(14)70923-5. No abstract available.

PMID:
25253401
20.

Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing.

Wendt JM, Kaul D, Limbago BM, Ramesh M, Cohle S, Denison AM, Driebe EM, Rasheed JK, Zaki SR, Blau DM, Paddock CD, McDougal LK, Engelthaler DM, Keim PS, Roe CC, Akselrod H, Kuehnert MJ, Basavaraju SV.

Am J Transplant. 2014 Nov;14(11):2633-9. doi: 10.1111/ajt.12898. Epub 2014 Sep 22.

21.

TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations.

Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS.

PLoS One. 2014 Sep 19;9(9):e107964. doi: 10.1371/journal.pone.0107964. eCollection 2014.

22.

Real-time PCR assays for genotyping of Cryptococcus gattii in North America.

Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, Engelthaler DM.

BMC Microbiol. 2014 May 13;14:125. doi: 10.1186/1471-2180-14-125.

23.

Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes.

Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Á, Balla E, Keim PS, Gyuranecz M.

BMC Vet Res. 2014 May 7;10:107. doi: 10.1186/1746-6148-10-107.

24.

The 2010 cholera outbreak in Haiti: how science solved a controversy.

Orata FD, Keim PS, Boucher Y.

PLoS Pathog. 2014 Apr 3;10(4):e1003967. doi: 10.1371/journal.ppat.1003967. eCollection 2014 Apr. Review. No abstract available.

25.

Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, Earn DJ, Dewitte S, Rouillard JM, Grupe G, Wiechmann I, Bliska JB, Keim PS, Scholz HC, Holmes EC, Poinar H.

Lancet Infect Dis. 2014 Apr;14(4):319-26. doi: 10.1016/S1473-3099(13)70323-2. Epub 2014 Jan 28.

PMID:
24480148
26.

Injectional anthrax in heroin users, Europe, 2000-2012.

Hanczaruk M, Reischl U, Holzmann T, Frangoulidis D, Wagner DM, Keim PS, Antwerpen MH, Meyer H, Grass G.

Emerg Infect Dis. 2014 Feb;20(2):322-3. doi: 10.3201/eid2002.120921. No abstract available.

27.

Discovery of (R)-4-cyclopropyl-7,8-difluoro-5-(4-(trifluoromethyl)phenylsulfonyl)-4,5-dihydro-1H-pyrazolo[4,3-c]quinoline (ELND006) and (R)-4-cyclopropyl-8-fluoro-5-(6-(trifluoromethyl)pyridin-3-ylsulfonyl)-4,5-dihydro-2H-pyrazolo[4,3-c]quinoline (ELND007): metabolically stable γ-secretase Inhibitors that selectively inhibit the production of amyloid-β over Notch.

Probst G, Aubele DL, Bowers S, Dressen D, Garofalo AW, Hom RK, Konradi AW, Marugg JL, Mattson MN, Neitzel ML, Semko CM, Sham HL, Smith J, Sun M, Truong AP, Ye XM, Xu YZ, Dappen MS, Jagodzinski JJ, Keim PS, Peterson B, Latimer LH, Quincy D, Wu J, Goldbach E, Ness DK, Quinn KP, Sauer JM, Wong K, Zhang H, Zmolek W, Brigham EF, Kholodenko D, Hu K, Kwong GT, Lee M, Liao A, Motter RN, Sacayon P, Santiago P, Willits C, Bard F, Bova MP, Hemphill SS, Nguyen L, Ruslim L, Tanaka K, Tanaka P, Wallace W, Yednock TA, Basi GS.

J Med Chem. 2013 Jul 11;56(13):5261-74. doi: 10.1021/jm301741t. Epub 2013 Jun 20.

PMID:
23713656
28.

Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel.

Gyuranecz M, Rannals BD, Allen CA, Jánosi S, Keim PS, Foster JT.

BMC Vet Res. 2013 Apr 12;9:76. doi: 10.1186/1746-6148-9-76.

29.

Feral swine brucellosis in the United States and prospective genomic techniques for disease epidemiology.

Leiser OP, Corn JL, Schmit BS, Keim PS, Foster JT.

Vet Microbiol. 2013 Sep 27;166(1-2):1-10. doi: 10.1016/j.vetmic.2013.02.025. Epub 2013 Mar 15. Review.

PMID:
23548760
30.

Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.

Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P.

J Bacteriol. 2012 Dec;194(23):6670-1. doi: 10.1128/JB.01765-12.

31.

Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response.

Aarestrup FM, Brown EW, Detter C, Gerner-Smidt P, Gilmour MW, Harmsen D, Hendriksen RS, Hewson R, Heymann DL, Johansson K, Ijaz K, Keim PS, Koopmans M, Kroneman A, Lo Fo Wong D, Lund O, Palm D, Sawanpanyalert P, Sobel J, Schlundt J.

Emerg Infect Dis. 2012 Nov;18(11):e1. doi: 10.3201/eid/1811.120453.

32.

An objective approach for Burkholderia pseudomallei strain selection as challenge material for medical countermeasures efficacy testing.

Van Zandt KE, Tuanyok A, Keim PS, Warren RL, Gelhaus HC.

Front Cell Infect Microbiol. 2012 Sep 26;2:120. doi: 10.3389/fcimb.2012.00120. eCollection 2012. Review.

33.

Source attribution of 2010 cholera epidemic in Haiti.

Frerichs RR, Boncy J, Barrais R, Keim PS, Piarroux R.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):E3208; author reply E3209. doi: 10.1073/pnas.1211512109. Epub 2012 Oct 9. No abstract available.

34.

Nepalese origin of cholera epidemic in Haiti.

Frerichs RR, Keim PS, Barrais R, Piarroux R.

Clin Microbiol Infect. 2012 Jun;18(6):E158-63. doi: 10.1111/j.1469-0691.2012.03841.x. Epub 2012 Apr 17.

35.

Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens.

Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, Currie BJ.

J Clin Microbiol. 2012 Jun;50(6):2059-62. doi: 10.1128/JCM.06737-11. Epub 2012 Mar 21.

36.

Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models.

Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, Keim PS.

PLoS One. 2012;7(3):e32866. doi: 10.1371/journal.pone.0032866. Epub 2012 Mar 16.

37.

The toxin/immunity network of Burkholderia pseudomallei contact-dependent growth inhibition (CDI) systems.

Nikolakakis K, Amber S, Wilbur JS, Diner EJ, Aoki SK, Poole SJ, Tuanyok A, Keim PS, Peacock S, Hayes CS, Low DA.

Mol Microbiol. 2012 May;84(3):516-29. doi: 10.1111/j.1365-2958.2012.08039.x. Epub 2012 Apr 4.

38.

The Mountain Meadows Massacre and "poisoned springs": scientific testing of the more recent, anthrax theory.

Perego UA, Achilli A, Ekins JE, Milani L, Lari M, Pilli E, Brown A, Price EP, Wolken SR, Matthews M, Allen CA, Pearson TR, Angerhofer N, Caramelli D, Kupferschmid T, Keim PS, Woodward SR.

Int J Legal Med. 2013 Jan;127(1):77-83. doi: 10.1007/s00414-012-0681-y. Epub 2012 Mar 7.

39.

Public health and biosecurity. Adaptations of avian flu virus are a cause for concern.

Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, Miller JF, Murch R, Nance ME, Osterholm MT, Relman DA, Roth JA, Vidaver AK.

Science. 2012 Feb 10;335(6069):660-1. doi: 10.1126/science.1217994. Epub 2012 Jan 31. No abstract available.

PMID:
22294736
40.

The NSABB recommendations: rationale, impact, and implications.

Keim PS.

MBio. 2012 Jan 31;3(1). pii: e00021-12. doi: 10.1128/mBio.00021-12. Print 2012.

41.

Policy: Adaptations of avian flu virus are a cause for concern.

Berns KI, Casadevall A, Cohen ML, Ehrlich SA, Enquist LW, Fitch JP, Franz DR, Fraser-Liggett CM, Grant CM, Imperiale MJ, Kanabrocki J, Keim PS, Lemon SM, Levy SB, Lumpkin JR, Miller JF, Murch R, Nance ME, Osterholm MT, Relman DA, Roth JA, Vidaver AK.

Nature. 2012 Jan 31;482(7384):153-4. doi: 10.1038/482153a. No abstract available.

PMID:
22294204
42.

Q&A: Reasons for proposed redaction of flu paper.

Keim PS.

Nature. 2012 Jan 31;482(7384):156-7. doi: 10.1038/482156a. No abstract available.

PMID:
22294203
43.

Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona.

Bowers JR, Driebe EM, Nibecker JL, Wojack BR, Sarovich DS, Wong AH, Brzoska PM, Hubert N, Knadler A, Watson LM, Wagner DM, Furtado MR, Saubolle M, Engelthaler DM, Keim PS.

BMC Microbiol. 2012 Jan 18;12:12. doi: 10.1186/1471-2180-12-12.

44.

Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus.

Hoopes JD, Driebe EM, Kelley E, Engelthaler DM, Keim PS, Perelson AS, Rong L, Went GT, Nguyen JT.

PLoS One. 2011;6(12):e29778. doi: 10.1371/journal.pone.0029778. Epub 2011 Dec 29.

45.

Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens.

Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ.

J Microbiol Methods. 2012 Jan;88(1):179-81. doi: 10.1016/j.mimet.2011.10.023. Epub 2011 Nov 12.

46.

Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain".

Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T.

MBio. 2011 Nov 1;2(6):e00245-11. doi: 10.1128/mBio.00245-11. Print 2011. No abstract available.

47.

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM.

MBio. 2011 Sep 1;2(4):e00157-11. doi: 10.1128/mBio.00157-11. Print 2011.

48.

Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase.

James SH, Hartline CB, Harden EA, Driebe EM, Schupp JM, Engelthaler DM, Keim PS, Bowlin TL, Kern ER, Prichard MN.

Antimicrob Agents Chemother. 2011 Oct;55(10):4682-91. doi: 10.1128/AAC.00571-11. Epub 2011 Jul 25.

49.

The otologic microbiome: a study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing.

Liu CM, Cosetti MK, Aziz M, Buchhagen JL, Contente-Cuomo TL, Price LB, Keim PS, Lalwani AK.

Arch Otolaryngol Head Neck Surg. 2011 Jul;137(7):664-8. doi: 10.1001/archoto.2011.116.

PMID:
21768410
50.

Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei.

Kang Y, Norris MH, Wilcox BA, Tuanyok A, Keim PS, Hoang TT.

Nat Protoc. 2011 Jul 7;6(8):1085-104. doi: 10.1038/nprot.2011.346.

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