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Items: 1 to 50 of 435

1.

Evaluating the long-term persistence of Bacillus spores on common surfaces.

Enger KS, Mitchell J, Murali B, Birdsell DN, Keim P, Gurian PL, Wagner DM.

Microb Biotechnol. 2018 May 3. doi: 10.1111/1751-7915.13267. [Epub ahead of print]

2.

Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis.

Bowers JR, Driebe EM, Albrecht V, McDougal LK, Granade M, Roe CC, Lemmer D, Rasheed JK, Engelthaler DM, Keim P, Limbago BM.

mSphere. 2018 May 2;3(3). pii: e00464-17. doi: 10.1128/mSphere.00464-17. eCollection 2018 May-Jun.

3.

Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: Implications for gene discovery.

Woolbright SA, Rehill BJ, Lindroth RL, DiFazio SP, Martinsen GD, Zinkgraf MS, Allan GJ, Keim P, Whitham TG.

Ecol Evol. 2018 Mar 8;8(7):3726-3737. doi: 10.1002/ece3.3932. eCollection 2018 Apr.

4.

Developing Inclusivity and Exclusivity Panels for Testing Diagnostic and Detection Tools Targeting Burkholderia pseudomallei, the Causative Agent of Melioidosis.

Williamson CHD, Wagner DM, Keim P, Sahl JW.

J AOAC Int. 2018 Apr 20. doi: 10.5740/jaoacint.18-0014. [Epub ahead of print]

PMID:
29678218
5.

Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection.

Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P.

Genome Announc. 2018 Mar 15;6(11). pii: e00072-18. doi: 10.1128/genomeA.00072-18.

6.

Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay.

Bowers JR, Parise KL, Kelley EJ, Lemmer D, Schupp JM, Driebe EM, Engelthaler DM, Keim P, Barker BM.

Med Mycol. 2018 Mar 8. doi: 10.1093/mmy/myy007. [Epub ahead of print]

PMID:
29534236
7.

African Lineage Brucella melitensis Isolates from Omani Livestock.

Foster JT, Walker FM, Rannals BD, Hussain MH, Drees KP, Tiller RV, Hoffmaster AR, Al-Rawahi A, Keim P, Saqib M.

Front Microbiol. 2018 Jan 15;8:2702. doi: 10.3389/fmicb.2017.02702. eCollection 2017.

8.

Bond-orientational order and Frank's constant in two-dimensional colloidal hard spheres.

Thorneywork AL, Abbott JL, Aarts DGAL, Keim P, Dullens RPA.

J Phys Condens Matter. 2018 Mar 14;30(10):104003. doi: 10.1088/1361-648X/aaab31.

PMID:
29376830
9.

Isolating long-wavelength fluctuation from structural relaxation in two-dimensional glass: cage-relative displacement.

Shiba H, Keim P, Kawasaki T.

J Phys Condens Matter. 2018 Mar 7;30(9):094004. doi: 10.1088/1361-648X/aaa8b8.

PMID:
29345245
10.

Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome.

Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, Foster JT.

MBio. 2017 Dec 12;8(6). pii: e01941-17. doi: 10.1128/mBio.01941-17.

11.

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model.

Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN.

PLoS Negl Trop Dis. 2017 Dec 11;11(12):e0006077. doi: 10.1371/journal.pntd.0006077. eCollection 2017 Dec.

12.

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ.

Muller EEL, Narayanasamy S, Zeimes M, Laczny CC, Lebrun LA, Herold M, Hicks ND, Gillece JD, Schupp JM, Keim P, Wilmes P.

Stand Genomic Sci. 2017 Oct 18;12:64. doi: 10.1186/s40793-017-0274-y. eCollection 2017.

13.

Effects of binge alcohol exposure on Burkholderia thailandensis-alveolar macrophage interaction.

Jimenez V Jr, Moreno R, Kaufman E, Hornstra H, Settles E, Currie BJ, Keim P, Monroy FP.

Alcohol. 2017 Nov;64:55-63. doi: 10.1016/j.alcohol.2017.04.004. Epub 2017 Aug 19.

PMID:
28965656
14.

Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis.

Price EP, Sarovich DS, Webb JR, Hall CM, Jaramillo SA, Sahl JW, Kaestli M, Mayo M, Harrington G, Baker AL, Sidak-Loftis LC, Settles EW, Lummis M, Schupp JM, Gillece JD, Tuanyok A, Warner J, Busch JD, Keim P, Currie BJ, Wagner DM.

PLoS Negl Trop Dis. 2017 Sep 14;11(9):e0005928. doi: 10.1371/journal.pntd.0005928. eCollection 2017 Sep.

15.

Mechanisms of Resistance to Folate Pathway Inhibitors in Burkholderia pseudomallei: Deviation from the Norm.

Podnecky NL, Rhodes KA, Mima T, Drew HR, Chirakul S, Wuthiekanun V, Schupp JM, Sarovich DS, Currie BJ, Keim P, Schweizer HP.

MBio. 2017 Sep 5;8(5). pii: e01357-17. doi: 10.1128/mBio.01357-17.

16.

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague.

Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Andersen G, Birdsell DN, Rahalison L, Nottingham R, Keim P, Wagner DM, Rajerison M.

PLoS Negl Trop Dis. 2017 Sep 5;11(9):e0005887. doi: 10.1371/journal.pntd.0005887. eCollection 2017 Sep.

17.

Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.

Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW.

PLoS One. 2017 Aug 30;12(8):e0183478. doi: 10.1371/journal.pone.0183478. eCollection 2017.

18.

AOAC SMPR 2016.010.

Gee J, Arce J, Beck LC, Blank TR, Blyn L, Cahall R, Clark AJ, Currie B, Damer K, Davenport M, DeShazer D, Johns M, Keim PS, Kiss K, Lesho M, Lin N, Morse SA, Naraghi-Arani P, Ozanich R, Roberto F, Rozak D, Sahl J, Schaefer F, Schutzer S, Schweizer HP, Sozhamannan S, Tuanyok A, Coates S.

J AOAC Int. 2017 Jan 1;100(1):261-265. doi: 10.5740/jaoacint.SMPR2016.010. No abstract available.

PMID:
28825553
19.

Critical Knowledge Gaps in Our Understanding of Environmental Cycling and Transmission of Leptospira spp.

Barragan V, Olivas S, Keim P, Pearson T.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01190-17. doi: 10.1128/AEM.01190-17. Print 2017 Oct 1. Review.

20.

Differentiating Botulinum Neurotoxin-Producing Clostridia with a Simple, Multiplex PCR Assay.

Williamson CHD, Vazquez AJ, Hill K, Smith TJ, Nottingham R, Stone NE, Sobek CJ, Cocking JH, Fernández RA, Caballero PA, Leiser OP, Keim P, Sahl JW.

Appl Environ Microbiol. 2017 Aug 31;83(18). pii: e00806-17. doi: 10.1128/AEM.00806-17. Print 2017 Sep 15.

21.

Non-Toxin-Producing Bacillus cereus Strains Belonging to the B. anthracis Clade Isolated from the International Space Station.

Venkateswaran K, Singh NK, Checinska Sielaff A, Pope RK, Bergman NH, van Tongeren SP, Patel NB, Lawson PA, Satomi M, Williamson CHD, Sahl JW, Keim P, Pierson D, Perry J.

mSystems. 2017 Jun 27;2(3). pii: e00021-17. doi: 10.1128/mSystems.00021-17. eCollection 2017 May-Jun.

22.

Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects.

Lal D, Keim P, Delisle J, Barker B, Rank MA, Chia N, Schupp JM, Gillece JD, Cope EK.

Int Forum Allergy Rhinol. 2017 Jun;7(6):561-569. doi: 10.1002/alr.21934. Epub 2017 May 8.

PMID:
28481057
23.

Characterization of Microsatellites in Pseudogymnoascus destructans for White-nose Syndrome Genetic Analysis.

Drees KP, Parise KL, Rivas SM, Felton LL, Puechmaille SJ, Keim P, Foster JT.

J Wildl Dis. 2017 Oct;53(4):869-874. doi: 10.7589/2016-09-217. Epub 2017 May 5.

PMID:
28475452
24.

Unexpected Relations of Historical Anthrax Strain.

Antwerpen MH, Sahl JW, Birdsell D, Pearson T, Pearce MJ, Redmond C, Meyer H, Keim PS.

MBio. 2017 Apr 25;8(2). pii: e00440-17. doi: 10.1128/mBio.00440-17.

25.

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CHD, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, Keim P.

Microb Genom. 2016 Aug 25;2(8):e000074. doi: 10.1099/mgen.0.000074. eCollection 2016 Aug.

26.

Massive dispersal of Coxiella burnetii among cattle across the United States.

Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, Pearson T.

Microb Genom. 2016 Aug 25;2(8):e000068. doi: 10.1099/mgen.0.000068. eCollection 2016 Aug.

27.

Long-range dispersal moved Francisella tularensis into Western Europe from the East.

Dwibedi C, Birdsell D, Lärkeryd A, Myrtennäs K, Öhrman C, Nilsson E, Karlsson E, Hochhalter C, Rivera A, Maltinsky S, Bayer B, Keim P, Scholz HC, Tomaso H, Wittwer M, Beuret C, Schuerch N, Pilo P, Hernández Pérez M, Rodriguez-Lazaro D, Escudero R, Anda P, Forsman M, Wagner DM, Larsson P, Johansson A.

Microb Genom. 2016 Dec 12;2(12):e000100. doi: 10.1099/mgen.0.000100. eCollection 2016 Dec.

28.

Microbiome and pancreatic cancer: A comprehensive topic review of literature.

Ertz-Archambault N, Keim P, Von Hoff D.

World J Gastroenterol. 2017 Mar 14;23(10):1899-1908. doi: 10.3748/wjg.v23.i10.1899. Review.

29.

Time to Worry about Anthrax Again.

Keim PS, Walker DH, Zilinskas RA.

Sci Am. 2017 Mar 14;316(4):70-75. doi: 10.1038/scientificamerican0417-70. No abstract available.

PMID:
28296844
30.

Mermin-Wagner fluctuations in 2D amorphous solids.

Illing B, Fritschi S, Kaiser H, Klix CL, Maret G, Keim P.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):1856-1861. doi: 10.1073/pnas.1612964114. Epub 2017 Jan 30.

31.

Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities.

Barragan V, Nieto N, Keim P, Pearson T.

BMC Res Notes. 2017 Jan 28;10(1):71. doi: 10.1186/s13104-017-2384-4. Review.

32.

Global and regional dissemination and evolution of Burkholderia pseudomallei.

Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, Spratt BG, Corander J, Keim P, Dougan G, Dance DA, Currie BJ, Parkhill J, Peacock SJ.

Nat Microbiol. 2017 Jan 23;2:16263. doi: 10.1038/nmicrobiol.2016.263.

33.

Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections.

Roe CC, Horn KS, Driebe EM, Bowers J, Terriquez JA, Keim P, Engelthaler DM.

Hereditas. 2016 Nov 14;153:11. doi: 10.1186/s41065-016-0017-x. eCollection 2016.

34.

Development of Immunoassays for Burkholderia pseudomallei Typical and Atypical Lipopolysaccharide Strain Typing.

Nualnoi T, Norris MH, Tuanyok A, Brett PJ, Burtnick MN, Keim PS, Settles EW, Allender CJ, AuCoin DP.

Am J Trop Med Hyg. 2017 Feb 8;96(2):358-367. doi: 10.4269/ajtmh.16-0308. Epub 2016 Dec 19.

35.

Burkholderia humptydooensis sp. nov., a New Species Related to Burkholderia thailandensis and the Fifth Member of the Burkholderia pseudomallei Complex.

Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, Kreutzer L, Georgi E, Gee JE, Bowen RA, Ladner JT, Lovett S, Koroleva G, Palacios G, Wagner DM, Currie BJ, Keim P.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e02802-16. doi: 10.1128/AEM.02802-16. Print 2017 Mar 1.

36.

Strain Pattern in Supercooled Liquids.

Illing B, Fritschi S, Hajnal D, Klix C, Keim P, Fuchs M.

Phys Rev Lett. 2016 Nov 11;117(20):208002. Epub 2016 Nov 8.

PMID:
27886484
37.

VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation.

Vogler AJ, Nottingham R, Busch JD, Sahl JW, Shuey MM, Foster JT, Schupp JM, Smith SR, Rocke TE, Keim P, Wagner DM.

Infect Genet Evol. 2016 Nov;45:297-302. doi: 10.1016/j.meegid.2016.09.019. Epub 2016 Sep 21.

PMID:
27664903
38.

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes.

Stone NE, Sidak-Loftis LC, Sahl JW, Vazquez AJ, Wiggins KB, Gillece JD, Hicks ND, Schupp JM, Busch JD, Keim P, Wagner DM.

PLoS One. 2016 Oct 10;11(10):e0164504. doi: 10.1371/journal.pone.0164504. eCollection 2016.

39.

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens.

Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P.

MBio. 2016 Sep 27;7(5). pii: e01501-16. doi: 10.1128/mBio.01501-16.

40.

The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers.

Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM.

MBio. 2016 Sep 20;7(5). pii: e00846-16. doi: 10.1128/mBio.00846-16.

41.

High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador.

Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, Reyes S, de la Cruz C, Keim P, Hartskeerl R, Trueba G, Pearson T.

PLoS Negl Trop Dis. 2016 Sep 13;10(9):e0004990. doi: 10.1371/journal.pntd.0004990. eCollection 2016 Sep.

42.

KlebSeq, a Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae.

Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P.

J Clin Microbiol. 2016 Oct;54(10):2582-96. doi: 10.1128/JCM.00927-16. Epub 2016 Aug 10.

43.

Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution.

Shabbir M, Aleem M, Javed S, Wagner DM, Keim PS, Eqani SA, Bokhari H.

J Infect Dev Ctries. 2016 Aug 2;10(7):687-93. doi: 10.3855/jidc.7091. Review.

44.

AOAC SMPR(®) 2016.007.

Keim PS, Wagner D, Appler J, Bauer T, Beck L, Boylan J, Cahall R, Damer K, Davenport M, Forsman M, Hinrichs SH, Kiss K, Maple L, Morse SA, Naraghi-Arani P, Petersen J, Pettit D, Retford M, Scheckelhoff M, Shah S, Sozhamannan S, Coates SG.

J AOAC Int. 2016 Jul;99(4):1090-1094. doi: 10.5740/jaoacint.SMPR2016.007. No abstract available.

PMID:
27455937
45.

Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment.

Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF.

Vector Borne Zoonotic Dis. 2016 Sep;16(9):588-94. doi: 10.1089/vbz.2016.1972. Epub 2016 Jun 15.

46.

False detection of Coxiella burnetii-what is the risk?

Pearson T, Cocking JH, Hornstra HM, Keim P.

FEMS Microbiol Lett. 2016 May;363(10). pii: fnw088. doi: 10.1093/femsle/fnw088. Epub 2016 Apr 7. No abstract available.

47.

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever.

Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR 3rd, Chiller T, Barker B, Keim P, Litvintseva AP.

MBio. 2016 Apr 26;7(2):e00550-16. doi: 10.1128/mBio.00550-16.

48.

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, Wuthiekanun V, Tuanyok A, Norton R, Currie BJ, Wagner DM, Keim P, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2016 Apr 21;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. No abstract available.

49.

The Phylogeny of Bacillus cereus sensu lato.

Okinaka RT, Keim P.

Microbiol Spectr. 2016 Feb;4(1). doi: 10.1128/microbiolspec.TBS-0012-2012.

PMID:
26999390
50.

Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States.

Engelthaler DM, Valentine M, Bowers J, Pistole J, Driebe EM, Terriquez J, Nienstadt L, Carroll M, Schumacher M, Ormsby ME, Brady S, Livar E, Yazzie D, Waddell V, Peoples M, Komatsu K, Keim P.

Emerg Infect Dis. 2016 Apr;22(4):734-8. doi: 10.3201/eid2204.151582.

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