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Items: 1 to 50 of 327

1.

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil.

Levy-Booth DJ, Giesbrecht IJW, Kellogg CTE, Heger TJ, D'Amore DV, Keeling PJ, Hallam SJ, Mohn WW.

ISME J. 2018 Dec 11. doi: 10.1038/s41396-018-0334-3. [Epub ahead of print]

PMID:
30538276
2.

High Prevalence and Endemism of Trypanosomatids on a Small Caribbean Island.

Votýpka J, Kment P, Kriegová E, Vermeij MJA, Keeling PJ, Yurchenko V, Lukeš J.

J Eukaryot Microbiol. 2018 Nov 27. doi: 10.1111/jeu.12704. [Epub ahead of print]

PMID:
30480347
3.

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.

Strassert JFH, Hehenberger E, Del Campo J, Okamoto N, Kolisko M, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2018 Nov 16. doi: 10.1111/jeu.12701. [Epub ahead of print]

PMID:
30444565
4.

Puromycin selection for stable transfectants of the oyster-infecting parasite Perkinsus marinus.

Sakamoto H, Hirakawa Y, Ishida KI, Keeling PJ, Kita K, Matsuzaki M.

Parasitol Int. 2018 Oct 30;69:13-16. doi: 10.1016/j.parint.2018.10.011. [Epub ahead of print]

PMID:
30389616
5.

Phylogenomics supports the monophyly of the Cercozoa.

Irwin NAT, Tikhonenkov DV, Hehenberger E, Mylnikov AP, Burki F, Keeling PJ.

Mol Phylogenet Evol. 2019 Jan;130:416-423. doi: 10.1016/j.ympev.2018.09.004. Epub 2018 Oct 11.

PMID:
30318266
6.

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution.

Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C, de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L.

PLoS Biol. 2018 Sep 17;16(9):e2005849. doi: 10.1371/journal.pbio.2005849. eCollection 2018 Sep.

7.

Fe-S Cluster Assembly in Oxymonads and Related Protists.

Vacek V, Novák LVF, Treitli SC, Táborský P, Cepicka I, Kolísko M, Keeling PJ, Hampl V.

Mol Biol Evol. 2018 Nov 1;35(11):2712-2718. doi: 10.1093/molbev/msy168.

8.

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

Okamoto N, Gawryluk RMR, Del Campo J, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

J Eukaryot Microbiol. 2018 Aug 6. doi: 10.1111/jeu.12679. [Epub ahead of print]

PMID:
30080299
9.

What Can Environmental Sequences Tell Us About the Distribution of Low-Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes enigma sp. nov.

Boscaro V, Syberg-Olsen MJ, Irwin NAT, Del Campo J, Keeling PJ.

J Eukaryot Microbiol. 2018 Jul 20. doi: 10.1111/jeu.12669. [Epub ahead of print]

PMID:
30028565
10.

EukRef-Ciliophora: a manually curated, phylogeny-based database of small subunit rRNA gene sequences of ciliates.

Boscaro V, Santoferrara LF, Zhang Q, Gentekaki E, Syberg-Olsen MJ, Del Campo J, Keeling PJ.

Environ Microbiol. 2018 May 4. doi: 10.1111/1462-2920.14264. [Epub ahead of print]

PMID:
29727060
11.

Global diversity and distribution of close relatives of apicomplexan parasites.

Mathur V, Del Campo J, Kolisko M, Keeling PJ.

Environ Microbiol. 2018 Aug;20(8):2824-2833. doi: 10.1111/1462-2920.14134. Epub 2018 Jun 1.

PMID:
29687563
12.

Viral proteins as a potential driver of histone depletion in dinoflagellates.

Irwin NAT, Martin BJE, Young BP, Browne MJG, Flaus A, Loewen CJR, Keeling PJ, Howe LJ.

Nat Commun. 2018 Apr 18;9(1):1535. doi: 10.1038/s41467-018-03993-4.

13.

Rhizarian 'Novel Clade 10' Revealed as Abundant and Diverse Planktonic and Terrestrial Flagellates, including Aquavolon n. gen.

Bass D, Tikhonenkov DV, Foster R, Dyal P, Janouškovec J, Keeling PJ, Gardner M, Neuhauser S, Hartikainen H, Mylnikov AP, Berney C.

J Eukaryot Microbiol. 2018 Nov;65(6):828-842. doi: 10.1111/jeu.12524. Epub 2018 May 14.

14.

Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase.

Záhonová K, Petrželková R, Valach M, Yazaki E, Tikhonenkov DV, Butenko A, Janouškovec J, Hrdá Š, Klimeš V, Burger G, Inagaki Y, Keeling PJ, Hampl V, Flegontov P, Yurchenko V, Eliáš M.

Sci Rep. 2018 Mar 27;8(1):5239. doi: 10.1038/s41598-018-23575-0.

15.

Publisher Correction: Parallel genome reduction in symbionts descended from closely related free-living bacteria.

Boscaro V, Kolisko M, Felletti M, Vannini C, Lynn DH, Keeling PJ.

Nat Ecol Evol. 2018 Apr;2(4):750. doi: 10.1038/s41559-018-0484-8.

PMID:
29487366
16.

High-throughput environmental sequencing reveals high diversity of litter and moss associated protist communities along a gradient of drainage and tree productivity.

Heger TJ, Giesbrecht IJW, Gustavsen J, Del Campo J, Kellogg CTE, Hoffman KM, Lertzman K, Mohn WW, Keeling PJ.

Environ Microbiol. 2018 Mar;20(3):1185-1203. doi: 10.1111/1462-2920.14061. Epub 2018 Mar 12.

PMID:
29417706
17.

Symbiont replacement between bacteria of different classes reveals additional layers of complexity in the evolution of symbiosis in the ciliate Euplotes.

Boscaro V, Fokin SI, Petroni G, Verni F, Keeling PJ, Vannini C.

Protist. 2018 Feb;169(1):43-52. doi: 10.1016/j.protis.2017.12.003. Epub 2017 Dec 20.

PMID:
29414319
18.

Transformation of Diplonema papillatum, the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa).

Kaur B, Valach M, Peña-Diaz P, Moreira S, Keeling PJ, Burger G, Lukeš J, Faktorová D.

Environ Microbiol. 2018 Mar;20(3):1030-1040. doi: 10.1111/1462-2920.14041. Epub 2018 Feb 2.

PMID:
29318727
19.

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing.

Orsi WD, Wilken S, Del Campo J, Heger T, James E, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

Environ Microbiol. 2018 Feb;20(2):815-827. doi: 10.1111/1462-2920.14018. Epub 2018 Jan 2.

PMID:
29215213
20.

Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure.

Del Campo J, James ER, Hirakawa Y, Fiorito R, Kolisko M, Irwin NAT, Mathur V, Boscaro V, Hehenberger E, Karnkowska A, Scheffrahn RH, Keeling PJ.

Sci Rep. 2017 Nov 27;7(1):16349. doi: 10.1038/s41598-017-16259-8.

21.

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.

Janouškovec J, Tikhonenkov DV, Burki F, Howe AT, Rohwer FL, Mylnikov AP, Keeling PJ.

Curr Biol. 2017 Dec 4;27(23):3717-3724.e5. doi: 10.1016/j.cub.2017.10.051. Epub 2017 Nov 22.

22.

Sympatric kelp species share a large portion of their surface bacterial communities.

Lemay MA, Martone PT, Keeling PJ, Burt JM, Krumhansl KA, Sanders RD, Wegener Parfrey L.

Environ Microbiol. 2018 Feb;20(2):658-670. doi: 10.1111/1462-2920.13993. Epub 2017 Dec 7.

PMID:
29124859
23.

Parallel genome reduction in symbionts descended from closely related free-living bacteria.

Boscaro V, Kolisko M, Felletti M, Vannini C, Lynn DH, Keeling PJ.

Nat Ecol Evol. 2017 Aug;1(8):1160-1167. doi: 10.1038/s41559-017-0237-0. Epub 2017 Jul 21. Erratum in: Nat Ecol Evol. 2018 Feb 27;:.

PMID:
29046583
24.

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

ISME J. 2018 Jan;12(1):304-308. doi: 10.1038/ismej.2017.167. Epub 2017 Oct 10.

25.

Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts.

Boscaro V, James ER, Fiorito R, Hehenberger E, Karnkowska A, Del Campo J, Kolisko M, Irwin NAT, Mathur V, Scheffrahn RH, Keeling PJ.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3570-3575. doi: 10.1099/ijsem.0.002169. Epub 2017 Aug 25.

PMID:
28840814
26.

New Species of Spirotrichonympha from Reticulitermes and the Relationships Among Genera in Spirotrichonymphea (Parabasalia).

Gile GH, James ER, Tai V, Harper JT, Merrell TL, Boscaro V, Husník F, Scheffrahn RH, Keeling PJ.

J Eukaryot Microbiol. 2018 Mar;65(2):159-169. doi: 10.1111/jeu.12447. Epub 2017 Aug 4.

PMID:
28710832
27.

Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals.

Hehenberger E, Tikhonenkov DV, Kolisko M, Del Campo J, Esaulov AS, Mylnikov AP, Keeling PJ.

Curr Biol. 2017 Jul 10;27(13):2043-2050.e6. doi: 10.1016/j.cub.2017.06.006. Epub 2017 Jun 22.

28.

Endosymbiosis: The feeling is not mutual.

Keeling PJ, McCutcheon JP.

J Theor Biol. 2017 Dec 7;434:75-79. doi: 10.1016/j.jtbi.2017.06.008. Epub 2017 Jun 15.

29.

Marine Protists Are Not Just Big Bacteria.

Keeling PJ, Campo JD.

Curr Biol. 2017 Jun 5;27(11):R541-R549. doi: 10.1016/j.cub.2017.03.075. Review.

30.

How exaptations facilitated photosensory evolution: Seeing the light by accident.

Gavelis GS, Keeling PJ, Leander BS.

Bioessays. 2017 Jul;39(7). doi: 10.1002/bies.201600266. Epub 2017 Jun 1. Review.

PMID:
28570771
31.

Fish Parasite Dinoflagellates Haidadinium ichthyophilum and Piscinoodinium Share a Recent Common Ancestor.

Hehenberger E, James ER, Del Campo J, Buckland-Nicks JA, Reimchen TE, Keeling PJ.

J Eukaryot Microbiol. 2018 Jan;65(1):127-131. doi: 10.1111/jeu.12430. Epub 2017 Jun 19.

PMID:
28544317
32.

X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates.

Freeman MA, Fuss J, Kristmundsson Á, Bjorbækmo MFM, Mangot JF, Del Campo J, Keeling PJ, Shalchian-Tabrizi K, Bass D.

Curr Biol. 2017 Jun 5;27(11):1645-1651.e3. doi: 10.1016/j.cub.2017.04.045. Epub 2017 May 18.

33.

Microbial arms race: Ballistic "nematocysts" in dinoflagellates represent a new extreme in organelle complexity.

Gavelis GS, Wakeman KC, Tillmann U, Ripken C, Mitarai S, Herranz M, Özbek S, Holstein T, Keeling PJ, Leander BS.

Sci Adv. 2017 Mar 31;3(3):e1602552. doi: 10.1126/sciadv.1602552. eCollection 2017 Mar.

34.

Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods.

Pyle JD, Keeling PJ, Nibert ML.

Virus Res. 2017 Apr 2;233:95-104. doi: 10.1016/j.virusres.2017.02.015. Epub 2017 Mar 4.

35.

Morphological Identification and Single-Cell Genomics of Marine Diplonemids.

Gawryluk RMR, Del Campo J, Okamoto N, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

Curr Biol. 2016 Nov 21;26(22):3053-3059. doi: 10.1016/j.cub.2016.09.013.

36.

Biogeography and Character Evolution of the Ciliate Genus Euplotes (Spirotrichea, Euplotia), with Description of Euplotes curdsi sp. nov.

Syberg-Olsen MJ, Irwin NA, Vannini C, Erra F, Di Giuseppe G, Boscaro V, Keeling PJ.

PLoS One. 2016 Nov 9;11(11):e0165442. doi: 10.1371/journal.pone.0165442. eCollection 2016.

37.

Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes.

Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AG, Keeling PJ, Roger AJ, Čepička I, Hampl V.

BMC Evol Biol. 2016 Oct 6;16(1):197.

38.

Genomics: Evolution of the Genetic Code.

Keeling PJ.

Curr Biol. 2016 Sep 26;26(18):R851-R853. doi: 10.1016/j.cub.2016.08.005.

39.

The 'other' coral symbiont: Ostreobium diversity and distribution.

Del Campo J, Pombert JF, Šlapeta J, Larkum A, Keeling PJ.

ISME J. 2017 Jan;11(1):296-299. doi: 10.1038/ismej.2016.101. Epub 2016 Jul 15.

40.

Microsporidia-Emergent Pathogens in the Global Food Chain (Trends in Parasitology 32, 336-348; April 2, 2016).

Stentiford GD, Becnel JJ, Weiss LM, Keeling PJ, Didier ES, Williams BAP, Bjornson S, Kent ML, Freeman MA, Brown MJF, Troemel ER, Roesel K, Sokolova Y, Snowden KF, Solter LF.

Trends Parasitol. 2016 Aug;32(8):657. doi: 10.1016/j.pt.2016.06.002. Epub 2016 Jun 27. No abstract available.

PMID:
27365191
41.

Protists and the Wild, Wild West of Gene Expression: New Frontiers, Lawlessness, and Misfits.

Smith DR, Keeling PJ.

Annu Rev Microbiol. 2016 Sep 8;70:161-78. doi: 10.1146/annurev-micro-102215-095448. Epub 2016 Jun 17. Review.

PMID:
27359218
42.

Reference Tree and Environmental Sequence Diversity of Labyrinthulomycetes.

Pan J, Del Campo J, Keeling PJ.

J Eukaryot Microbiol. 2017 Jan;64(1):88-96. doi: 10.1111/jeu.12342. Epub 2016 Jul 27.

PMID:
27329779
43.

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont.

Hehenberger E, Burki F, Kolisko M, Keeling PJ.

Mol Biol Evol. 2016 Sep;33(9):2376-90. doi: 10.1093/molbev/msw109. Epub 2016 Jun 13.

PMID:
27297471
44.

Genome Evolution and Nitrogen Fixation in Bacterial Ectosymbionts of a Protist Inhabiting Wood-Feeding Cockroaches.

Tai V, Carpenter KJ, Weber PK, Nalepa CA, Perlman SJ, Keeling PJ.

Appl Environ Microbiol. 2016 Jul 15;82(15):4682-4695. doi: 10.1128/AEM.00611-16. Print 2016 Aug 1.

45.

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean.

Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE.

ISME J. 2016 Sep;10(9):2158-73. doi: 10.1038/ismej.2016.20. Epub 2016 Mar 8.

46.

Evolution: Causality and the Origin of Parasitism.

Janouskovec J, Keeling PJ.

Curr Biol. 2016 Feb 22;26(4):R174-7. doi: 10.1016/j.cub.2015.12.057.

47.

Moramonas marocensis gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome.

Strassert JF, Tikhonenkov DV, Pombert JF, Kolisko M, Tai V, Mylnikov AP, Keeling PJ.

Open Biol. 2016 Feb;6(2):150239. doi: 10.1098/rsob.150239.

48.

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista.

Burki F, Kaplan M, Tikhonenkov DV, Zlatogursky V, Minh BQ, Radaykina LV, Smirnov A, Mylnikov AP, Keeling PJ.

Proc Biol Sci. 2016 Jan 27;283(1823). pii: 20152802. doi: 10.1098/rspb.2015.2802. Epub 2016 Jan 27.

49.

Microsporidia - Emergent Pathogens in the Global Food Chain.

Stentiford GD, Becnel -J, Weiss LM, Keeling PJ, Didier ES, Williams BP, Bjornson S, Kent ML, Freeman MA, Brown MJF, Troemel ER, Roesel K, Sokolova Y, Snowden KF, Solter L.

Trends Parasitol. 2016 Apr;32(4):336-348. doi: 10.1016/j.pt.2015.12.004. Epub 2016 Jan 19. Review. Erratum in: Trends Parasitol. 2016 Aug;32(8):657.

50.

The Morphology, Ultrastructure and SSU rRNA Gene Sequence of a New Freshwater Flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata).

Tikhonenkov DV, Janouškovec J, Keeling PJ, Mylnikov AP.

J Eukaryot Microbiol. 2016 Mar-Apr;63(2):220-32. doi: 10.1111/jeu.12271. Epub 2015 Oct 15.

PMID:
26399688

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