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The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

Shilov IV, Seymour SL, Patel AA, Loboda A, Tang WH, Keating SP, Hunter CL, Nuwaysir LM, Schaeffer DA.

Mol Cell Proteomics. 2007 Sep;6(9):1638-55. Epub 2007 May 27.


Discovering known and unanticipated protein modifications using MS/MS database searching.

Tang WH, Halpern BR, Shilov IV, Seymour SL, Keating SP, Loboda A, Patel AA, Schaeffer DA, Nuwaysir LM.

Anal Chem. 2005 Jul 1;77(13):3931-46.


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