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Items: 27

1.

Predicting clinical outcomes in neuroblastoma with genomic data integration.

Baali I, Acar DAE, Aderinwale TW, HafezQorani S, Kazan H.

Biol Direct. 2018 Sep 27;13(1):20. doi: 10.1186/s13062-018-0223-8.

2.

MITF-MIR211 axis is a novel autophagy amplifier system during cellular stress.

Ozturk DG, Kocak M, Akcay A, Kinoglu K, Kara E, Buyuk Y, Kazan H, Gozuacik D.

Autophagy. 2018 Oct 5:1-16. doi: 10.1080/15548627.2018.1531197. [Epub ahead of print]

PMID:
30290719
3.

Measurement Reliability of the Remaining Dentin Thickness below Deep Carious Lesions in Primary Molars.

Berbari R, Khairallah A, Kazan HF, Ezzedine M, Bandon D, Sfeir E.

Int J Clin Pediatr Dent. 2018 Jan-Feb;11(1):23-28. doi: 10.5005/jp-journals-10005-1478. Epub 2017 Feb 1.

4.

Dual function of programmed cell death 10 (PDCD10) in drug resistance.

Urfali-Mamatoglu C, Kazan HH, Gündüz U.

Biomed Pharmacother. 2018 May;101:129-136. doi: 10.1016/j.biopha.2018.02.020. Epub 2018 Feb 23.

PMID:
29482058
5.

A Translational Repression Complex in Developing Mammalian Neural Stem Cells that Regulates Neuronal Specification.

Zahr SK, Yang G, Kazan H, Borrett MJ, Yuzwa SA, Voronova A, Kaplan DR, Miller FD.

Neuron. 2018 Feb 7;97(3):520-537.e6. doi: 10.1016/j.neuron.2017.12.045. Epub 2018 Jan 27.

PMID:
29395907
6.

Iron metabolism and drug resistance in cancer.

Kazan HH, Urfali-Mamatoglu C, Gunduz U.

Biometals. 2017 Oct;30(5):629-641. doi: 10.1007/s10534-017-0037-7. Epub 2017 Aug 1. Review.

PMID:
28766192
7.

Resistance to anticancer drugs permanently alters electrophoretic mobility of cancer cell lines.

Kazan HH, Urfali-Mamatoglu C, Gündüz U.

Electrophoresis. 2017 Apr;38(8):1201-1205. doi: 10.1002/elps.201600494. Epub 2017 Mar 15.

PMID:
28158905
8.

Electrophysiological characterization of hearing in individuals with Down syndrome.

Kazan HM, Samelli AG, Neves-Lobo IF, Magliaro FC, Limongi SC, Matas CG.

Codas. 2016 Nov-Dec;28(6):717-723. doi: 10.1590/2317-1782/20162015266. Epub 2016 Dec 12. Portuguese, English.

9.

Modeling Gene Regulation in Liver Hepatocellular Carcinoma with Random Forests.

Kazan H.

Biomed Res Int. 2016;2016:1035945. Epub 2016 Oct 12.

10.

Chemogenomics and orthology-based design of antibiotic combination therapies.

Chandrasekaran S, Cokol-Cakmak M, Sahin N, Yilancioglu K, Kazan H, Collins JJ, Cokol M.

Mol Syst Biol. 2016 May 24;12(5):872. doi: 10.15252/msb.20156777.

11.

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer).

Berkowitz ND, Silverman IM, Childress DM, Kazan H, Wang LS, Gregory BD.

BMC Bioinformatics. 2016 May 17;17(1):215. doi: 10.1186/s12859-016-1071-0.

12.

Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma.

Lafzi A, Kazan H.

PLoS One. 2016 May 17;11(5):e0155354. doi: 10.1371/journal.pone.0155354. eCollection 2016.

13.

Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.

de Bruin RG, Shiue L, Prins J, de Boer HC, Singh A, Fagg WS, van Gils JM, Duijs JM, Katzman S, Kraaijeveld AO, Böhringer S, Leung WY, Kielbasa SM, Donahue JP, van der Zande PH, Sijbom R, van Alem CM, Bot I, van Kooten C, Jukema JW, Van Esch H, Rabelink TJ, Kazan H, Biessen EA, Ares M Jr, van Zonneveld AJ, van der Veer EP.

Nat Commun. 2016 Mar 31;7:10846. doi: 10.1038/ncomms10846.

14.

Modeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulation.

HafezQorani S, Lafzi A, de Bruin RG, van Zonneveld AJ, van der Veer EP, Son YA, Kazan H.

Nucleic Acids Res. 2016 May 19;44(9):e83. doi: 10.1093/nar/gkw048. Epub 2016 Feb 2.

15.

JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.

Colak R, Kim T, Kazan H, Oh Y, Cruz M, Valladares-Salgado A, Peralta J, Escobedo J, Parra EJ, Kim PM, Goldenberg A.

Bioinformatics. 2016 Jan 15;32(2):203-10. doi: 10.1093/bioinformatics/btv504. Epub 2015 Sep 26.

16.

Modulation of Estrogen Response Element-Driven Gene Expressions and Cellular Proliferation with Polar Directions by Designer Transcription Regulators.

Muyan M, Güpür G, Yaşar P, Ayaz G, User SD, Kazan HH, Huang Y.

PLoS One. 2015 Aug 21;10(8):e0136423. doi: 10.1371/journal.pone.0136423. eCollection 2015.

17.

DNA extraction techniques compared for accurate detection of genetically modified organisms (GMOs) in maize food and feed products.

Turkec A, Kazan H, Karacanli B, Lucas SJ.

J Food Sci Technol. 2015 Aug;52(8):5164-71. doi: 10.1007/s13197-014-1547-8. Epub 2014 Sep 17.

18.

Target-independent prediction of drug synergies using only drug lipophilicity.

Yilancioglu K, Weinstein ZB, Meydan C, Akhmetov A, Toprak I, Durmaz A, Iossifov I, Kazan H, Roth FP, Cokol M.

J Chem Inf Model. 2014 Aug 25;54(8):2286-93. doi: 10.1021/ci500276x. Epub 2014 Aug 1.

19.

Evalution of DNA extraction methods in order to monitor genetically modified materials in soy foodstuffs and feeds commercialised in Turkey by multiplex real-time PCR.

Turkec A, Kazan H, Baykut A, Lucas SJ.

J Sci Food Agric. 2015 Jan;95(2):386-92. doi: 10.1002/jsfa.6731. Epub 2014 Jun 3.

PMID:
24816675
20.

Finding the target sites of RNA-binding proteins.

Li X, Kazan H, Lipshitz HD, Morris QD.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):111-30. doi: 10.1002/wrna.1201. Epub 2013 Nov 11. Review.

21.

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.

22.

RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins.

Kazan H, Morris Q.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W180-6. doi: 10.1093/nar/gkt463. Epub 2013 Jun 10.

23.

Immune-related antigens, surface molecules and regulatory factors in human-derived mesenchymal stromal cells: the expression and impact of inflammatory priming.

Najar M, Raicevic G, Fayyad-Kazan H, De Bruyn C, Bron D, Toungouz M, Lagneaux L.

Stem Cell Rev. 2012 Dec;8(4):1188-98. doi: 10.1007/s12015-012-9408-1. Erratum in: Stem Cell Rev. 2012 Dec;8(4):1286. Kazan, Hussein Fayyad [corrected to Fayyad-Kazan, Hussein].

PMID:
22983809
24.

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.

Wilbert ML, Huelga SC, Kapeli K, Stark TJ, Liang TY, Chen SX, Yan BY, Nathanson JL, Hutt KR, Lovci MT, Kazan H, Vu AQ, Massirer KB, Morris Q, Hoon S, Yeo GW.

Mol Cell. 2012 Oct 26;48(2):195-206. doi: 10.1016/j.molcel.2012.08.004. Epub 2012 Sep 6.

25.

RBPDB: a database of RNA-binding specificities.

Cook KB, Kazan H, Zuberi K, Morris Q, Hughes TR.

Nucleic Acids Res. 2011 Jan;39(Database issue):D301-8. doi: 10.1093/nar/gkq1069. Epub 2010 Oct 29.

26.

RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.

Kazan H, Ray D, Chan ET, Hughes TR, Morris Q.

PLoS Comput Biol. 2010 Jul 1;6:e1000832. doi: 10.1371/journal.pcbi.1000832.

27.

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.

Ray D, Kazan H, Chan ET, Peña Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR.

Nat Biotechnol. 2009 Jul;27(7):667-70. doi: 10.1038/nbt.1550. Epub 2009 Jun 28.

PMID:
19561594

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