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Items: 1 to 50 of 220

1.

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation.

Wongpalee SP, Liu S, Gallego-Bartolomé J, Leitner A, Aebersold R, Liu W, Yen L, Nohales MA, Kuo PH, Vashisht AA, Wohlschlegel JA, Feng S, Kay SA, Zhou ZH, Jacobsen SE.

Nat Commun. 2019 Sep 2;10(1):3916. doi: 10.1038/s41467-019-11759-9.

2.

Identification of pathways that regulate circadian rhythms using a larval zebrafish small molecule screen.

Mosser EA, Chiu CN, Tamai TK, Hirota T, Li S, Hui M, Wang A, Singh C, Giovanni A, Kay SA, Prober DA.

Sci Rep. 2019 Aug 27;9(1):12405. doi: 10.1038/s41598-019-48914-7.

3.

Targeting Glioblastoma Stem Cells through Disruption of the Circadian Clock.

Dong Z, Zhang G, Qu M, Gimple RC, Wu Q, Qiu Z, Prager BC, Wang X, Kim LJY, Morton AR, Dixit D, Zhou W, Huang H, Li B, Zhu Z, Bao S, Mack SC, Chavez L, Kay SA, Rich JN.

Cancer Discov. 2019 Aug 27. pii: CD-19-0215. doi: 10.1158/2159-8290.CD-19-0215. [Epub ahead of print]

PMID:
31455674
4.

Functional dissection of the ARGONAUTE7 promoter.

Hoyer JS, Pruneda-Paz JL, Breton G, Hassert MA, Holcomb EE, Fowler H, Bauer KM, Mreen J, Kay SA, Carrington JC.

Plant Direct. 2019 Jan 2;3(1):e00102. doi: 10.1002/pld3.102. eCollection 2019 Jan.

5.

Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock.

Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA.

Dev Cell. 2019 Jun 17;49(6):840-851.e8. doi: 10.1016/j.devcel.2019.04.030. Epub 2019 May 16.

PMID:
31105011
6.

Casein kinase 1 family regulates PRR5 and TOC1 in the Arabidopsis circadian clock.

Uehara TN, Mizutani Y, Kuwata K, Hirota T, Sato A, Mizoi J, Takao S, Matsuo H, Suzuki T, Ito S, Saito AN, Nishiwaki-Ohkawa T, Yamaguchi-Shinozaki K, Yoshimura T, Kay SA, Itami K, Kinoshita T, Yamaguchi J, Nakamichi N.

Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11528-11536. doi: 10.1073/pnas.1903357116. Epub 2019 May 16.

7.

Cell-based screen identifies a new potent and highly selective CK2 inhibitor for modulation of circadian rhythms and cancer cell growth.

Oshima T, Niwa Y, Kuwata K, Srivastava A, Hyoda T, Tsuchiya Y, Kumagai M, Tsuyuguchi M, Tamaru T, Sugiyama A, Ono N, Zolboot N, Aikawa Y, Oishi S, Nonami A, Arai F, Hagihara S, Yamaguchi J, Tama F, Kunisaki Y, Yagita K, Ikeda M, Kinoshita T, Kay SA, Itami K, Hirota T.

Sci Adv. 2019 Jan 23;5(1):eaau9060. doi: 10.1126/sciadv.aau9060. eCollection 2019 Jan.

8.

Chemical Control of Mammalian Circadian Behavior through Dual Inhibition of Casein Kinase Iα and δ.

Lee JW, Hirota T, Ono D, Honma S, Honma KI, Park K, Kay SA.

J Med Chem. 2019 Feb 28;62(4):1989-1998. doi: 10.1021/acs.jmedchem.8b01541. Epub 2019 Feb 15.

PMID:
30707835
9.

Nuclear receptor HNF4A transrepresses CLOCK:BMAL1 and modulates tissue-specific circadian networks.

Qu M, Duffy T, Hirota T, Kay SA.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12305-E12312. doi: 10.1073/pnas.1816411115. Epub 2018 Dec 10.

10.

Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.

Lee CM, Feke A, Li MW, Adamchek C, Webb K, Pruneda-Paz J, Bennett EJ, Kay SA, Gendron JM.

Plant Physiol. 2018 Jul;177(3):1170-1186. doi: 10.1104/pp.18.00331. Epub 2018 May 23.

11.

ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis.

Perrella G, Davidson MLH, O'Donnell L, Nastase AM, Herzyk P, Breton G, Pruneda-Paz JL, Kay SA, Chory J, Kaiserli E.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4503-E4511. doi: 10.1073/pnas.1718099115. Epub 2018 Apr 23.

12.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

13.

Taurine ameliorates particulate matter-induced emphysema by switching on mitochondrial NADH dehydrogenase genes.

Li X, Yang H, Sun H, Lu R, Zhang C, Gao N, Meng Q, Wu S, Wang S, Aschner M, Wu J, Tang B, Gu A, Kay SA, Chen R.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9655-E9664. doi: 10.1073/pnas.1712465114. Epub 2017 Oct 25.

14.

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis.

Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF, Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D.

Nat Genet. 2017 Oct;49(10):1546-1552. doi: 10.1038/ng.3937. Epub 2017 Aug 21.

PMID:
28825728
15.

A Modified Yeast-one Hybrid System for Heteromeric Protein Complex-DNA Interaction Studies.

Tripathi P, Pruneda-Paz JL, Kay SA.

J Vis Exp. 2017 Jul 24;(125). doi: 10.3791/56080.

16.

Regulatory Fit Improves Fitness for People With Low Exercise Experience.

Kay SA, Grimm LR.

J Sport Exerc Psychol. 2017 Apr;39(2):109-119. doi: 10.1123/jsep.2016-0274. Epub 2017 Jul 7.

PMID:
28686519
17.

TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.

Kubota A, Ito S, Shim JS, Johnson RS, Song YH, Breton G, Goralogia GS, Kwon MS, Laboy Cintrón D, Koyama T, Ohme-Takagi M, Pruneda-Paz JL, Kay SA, MacCoss MJ, Imaizumi T.

PLoS Genet. 2017 Jun 19;13(6):e1006856. doi: 10.1371/journal.pgen.1006856. eCollection 2017 Jun.

18.

Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors.

Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M.

Curr Biol. 2017 Feb 6;27(3):437-444. doi: 10.1016/j.cub.2016.12.016. Epub 2017 Jan 19.

19.

Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes.

Boyle G, Richter K, Priest HD, Traver D, Mockler TC, Chang JT, Kay SA, Breton G.

PLoS One. 2017 Jan 11;12(1):e0169923. doi: 10.1371/journal.pone.0169923. eCollection 2017.

20.

Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.

Tripathi P, Carvallo M, Hamilton EE, Preuss S, Kay SA.

Proc Natl Acad Sci U S A. 2017 Jan 3;114(1):172-177. doi: 10.1073/pnas.1616459114. Epub 2016 Dec 20.

21.

Molecular mechanisms at the core of the plant circadian oscillator.

Nohales MA, Kay SA.

Nat Struct Mol Biol. 2016 Dec;23(12):1061-1069. doi: 10.1038/nsmb.3327. Epub 2016 Dec 6. Review.

PMID:
27922614
22.

The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager.

Sanchez SE, Kay SA.

Cold Spring Harb Perspect Biol. 2016 Dec 1;8(12). pii: a027748. doi: 10.1101/cshperspect.a027748. Review.

23.

Circadian Amplitude Regulation via FBXW7-Targeted REV-ERBα Degradation.

Zhao X, Hirota T, Han X, Cho H, Chong LW, Lamia K, Liu S, Atkins AR, Banayo E, Liddle C, Yu RT, Yates JR 3rd, Kay SA, Downes M, Evans RM.

Cell. 2016 Jun 16;165(7):1644-1657. doi: 10.1016/j.cell.2016.05.012. Epub 2016 May 26.

24.

The Rqc2/Tae2 subunit of the ribosome-associated quality control (RQC) complex marks ribosome-stalled nascent polypeptide chains for aggregation.

Yonashiro R, Tahara EB, Bengtson MH, Khokhrina M, Lorenz H, Chen KC, Kigoshi-Tansho Y, Savas JN, Yates JR, Kay SA, Craig EA, Mogk A, Bukau B, Joazeiro CA.

Elife. 2016 Mar 4;5:e11794. doi: 10.7554/eLife.11794.

25.

Identification of Arabidopsis Transcriptional Regulators by Yeast One-Hybrid Screens Using a Transcription Factor ORFeome.

Breton G, Kay SA, Pruneda-Paz JL.

Methods Mol Biol. 2016;1398:107-18. doi: 10.1007/978-1-4939-3356-3_10.

PMID:
26867619
26.

Cultivated tomato clock runs slow.

Kay SA, Remigereau MS.

Nat Genet. 2016 Jan;48(1):8-9. doi: 10.1038/ng.3476.

PMID:
26711110
27.

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci.

Kaiserli E, Páldi K, O'Donnell L, Batalov O, Pedmale UV, Nusinow DA, Kay SA, Chory J.

Dev Cell. 2015 Nov 9;35(3):311-21. doi: 10.1016/j.devcel.2015.10.008.

28.

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.

Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA.

Mol Cell Proteomics. 2016 Jan;15(1):201-17. doi: 10.1074/mcp.M115.054064. Epub 2015 Nov 6.

29.

Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.

Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4802-10. doi: 10.1073/pnas.1513609112. Epub 2015 Aug 10.

30.

Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses.

Waadt R, Manalansan B, Rauniyar N, Munemasa S, Booker MA, Brandt B, Waadt C, Nusinow DA, Kay SA, Kunz HH, Schumacher K, DeLong A, Yates JR 3rd, Schroeder JI.

Plant Physiol. 2015 Sep;169(1):760-79. doi: 10.1104/pp.15.00575. Epub 2015 Jul 14.

31.

Development of Small-Molecule Cryptochrome Stabilizer Derivatives as Modulators of the Circadian Clock.

Lee JW, Hirota T, Kumar A, Kim NJ, Irle S, Kay SA.

ChemMedChem. 2015 Sep;10(9):1489-97. doi: 10.1002/cmdc.201500260. Epub 2015 Jul 14.

32.

Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.

Zheng XY, Zhou M, Yoo H, Pruneda-Paz JL, Spivey NW, Kay SA, Dong X.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9166-73. doi: 10.1073/pnas.1511182112. Epub 2015 Jul 2.

33.

C-H activation generates period-shortening molecules that target cryptochrome in the mammalian circadian clock.

Oshima T, Yamanaka I, Kumar A, Yamaguchi J, Nishiwaki-Ohkawa T, Muto K, Kawamura R, Hirota T, Yagita K, Irle S, Kay SA, Yoshimura T, Itami K.

Angew Chem Int Ed Engl. 2015 Jun 8;54(24):7193-7. doi: 10.1002/anie.201502942. Epub 2015 May 8.

PMID:
25960183
34.

Identification of small-molecule modulators of the circadian clock.

Hirota T, Kay SA.

Methods Enzymol. 2015;551:267-82. doi: 10.1016/bs.mie.2014.10.015. Epub 2014 Dec 12.

PMID:
25662461
35.

An Arabidopsis gene regulatory network for secondary cell wall synthesis.

Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, Zhang L, Ware D, Pauly M, Kliebenstein DJ, Dehesh K, Tagkopoulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM.

Nature. 2015 Jan 29;517(7536):571-5. doi: 10.1038/nature14099. Epub 2014 Dec 24.

36.

Control of plant stem cell function by conserved interacting transcriptional regulators.

Zhou Y, Liu X, Engstrom EM, Nimchuk ZL, Pruneda-Paz JL, Tarr PT, Yan A, Kay SA, Meyerowitz EM.

Nature. 2015 Jan 15;517(7534):377-80. doi: 10.1038/nature13853. Epub 2014 Oct 26.

37.

Tissue-specific clocks in Arabidopsis show asymmetric coupling.

Endo M, Shimizu H, Nohales MA, Araki T, Kay SA.

Nature. 2014 Nov 20;515(7527):419-22. doi: 10.1038/nature13919. Epub 2014 Oct 29.

38.

HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock.

Kolmos E, Chow BY, Pruneda-Paz JL, Kay SA.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16172-7. doi: 10.1073/pnas.1418483111. Epub 2014 Oct 28.

39.

Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway.

Guan P, Wang R, Nacry P, Breton G, Kay SA, Pruneda-Paz JL, Davani A, Crawford NM.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15267-72. doi: 10.1073/pnas.1411375111. Epub 2014 Oct 6.

40.

FBH1 affects warm temperature responses in the Arabidopsis circadian clock.

Nagel DH, Pruneda-Paz JL, Kay SA.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14595-600. doi: 10.1073/pnas.1416666111. Epub 2014 Sep 22.

41.

A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA.

Cell Rep. 2014 Jul 24;8(2):622-32. doi: 10.1016/j.celrep.2014.06.033. Epub 2014 Jul 17.

42.

Transcriptional regulation of LUX by CBF1 mediates cold input to the circadian clock in Arabidopsis.

Chow BY, Sanchez SE, Breton G, Pruneda-Paz JL, Krogan NT, Kay SA.

Curr Biol. 2014 Jul 7;24(13):1518-24. doi: 10.1016/j.cub.2014.05.029. Epub 2014 Jun 19.

43.

Daily changes in temperature, not the circadian clock, regulate growth rate in Brachypodium distachyon.

Matos DA, Cole BJ, Whitney IP, MacKinnon KJ, Kay SA, Hazen SP.

PLoS One. 2014 Jun 13;9(6):e100072. doi: 10.1371/journal.pone.0100072. eCollection 2014.

44.

Spatiotemporal separation of PER and CRY posttranslational regulation in the mammalian circadian clock.

St John PC, Hirota T, Kay SA, Doyle FJ 3rd.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):2040-5. doi: 10.1073/pnas.1323618111. Epub 2014 Jan 21.

45.

Real-time in vivo monitoring of circadian E-box enhancer activity: a robust and sensitive zebrafish reporter line for developmental, chemical and neural biology of the circadian clock.

Weger M, Weger BD, Diotel N, Rastegar S, Hirota T, Kay SA, Strähle U, Dickmeis T.

Dev Biol. 2013 Aug 15;380(2):259-73. doi: 10.1016/j.ydbio.2013.04.035. Epub 2013 May 9.

46.

BRANCHED1 interacts with FLOWERING LOCUS T to repress the floral transition of the axillary meristems in Arabidopsis.

Niwa M, Daimon Y, Kurotani K, Higo A, Pruneda-Paz JL, Breton G, Mitsuda N, Kay SA, Ohme-Takagi M, Endo M, Araki T.

Plant Cell. 2013 Apr;25(4):1228-42. doi: 10.1105/tpc.112.109090. Epub 2013 Apr 23.

47.

Global approaches for telling time: omics and the Arabidopsis circadian clock.

Chow BY, Kay SA.

Semin Cell Dev Biol. 2013 May;24(5):383-92. doi: 10.1016/j.semcdb.2013.02.005. Epub 2013 Feb 20. Review.

48.

Circadian surprise--it's not all about transcription.

Doherty CJ, Kay SA.

Science. 2012 Oct 19;338(6105):338-40. doi: 10.1126/science.1230008. No abstract available.

PMID:
23087238
49.

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.

Lai AG, Doherty CJ, Mueller-Roeber B, Kay SA, Schippers JH, Dijkwel PP.

Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17129-34. doi: 10.1073/pnas.1209148109. Epub 2012 Oct 1.

50.

Complexity in the wiring and regulation of plant circadian networks.

Nagel DH, Kay SA.

Curr Biol. 2012 Aug 21;22(16):R648-57. doi: 10.1016/j.cub.2012.07.025. Review. Erratum in: Curr Biol. 2013 Jan 7;23(1):95-6.

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