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Items: 37

1.

Loss of ER retention motif of AGR2 can impact mTORC signaling and promote cancer metastasis.

Tiemann K, Garri C, Lee SB, Malihi PD, Park M, Alvarez RM, Yap LP, Mallick P, Katz JE, Gross ME, Kani K.

Oncogene. 2019 Apr;38(16):3003-3018. doi: 10.1038/s41388-018-0638-9. Epub 2018 Dec 21.

PMID:
30575818
2.

A Phase 2 Randomized Trial To Evaluate Different Dose Regimens of Low-intensity Extracorporeal Shockwave Therapy for Erectile Dysfunction: Clinical Trial Update.

Katz JE, Molina ML, Clavijo R, Prakash NS, Ramasamy R.

Eur Urol Focus. 2018 Apr;4(3):336-337. doi: 10.1016/j.euf.2018.07.011. Epub 2018 Jul 17.

PMID:
30025713
3.

Disparities in Hispanic/Latino and non-Hispanic Black men with low-risk prostate cancer and eligible for active surveillance: a population-based study.

Katz JE, Chinea FM, Patel VN, Balise RR, Venkatramani V, Gonzalgo ML, Ritch C, Pollack A, Parekh DJ, Punnen S.

Prostate Cancer Prostatic Dis. 2018 Nov;21(4):533-538. doi: 10.1038/s41391-018-0057-6. Epub 2018 Jul 9.

PMID:
29988097
4.

Identification, characterization and application of a new peptide against anterior gradient homolog 2 (AGR2).

Garri C, Howell S, Tiemann K, Tiffany A, Jalali-Yazdi F, Alba MM, Katz JE, Takahashi TT, Landgraf R, Gross ME, Roberts RW, Kani K.

Oncotarget. 2018 Jun 8;9(44):27363-27379. doi: 10.18632/oncotarget.25221. eCollection 2018 Jun 8.

5.

AMModels: An R package for storing models, data, and metadata to facilitate adaptive management.

Donovan TM, Katz JE.

PLoS One. 2018 Feb 28;13(2):e0188966. doi: 10.1371/journal.pone.0188966. eCollection 2018.

6.

JUN-Mediated Downregulation of EGFR Signaling Is Associated with Resistance to Gefitinib in EGFR-mutant NSCLC Cell Lines.

Kani K, Garri C, Tiemann K, Malihi PD, Punj V, Nguyen AL, Lee J, Hughes LD, Alvarez RM, Wood DM, Joo AY, Katz JE, Agus DB, Mallick P.

Mol Cancer Ther. 2017 Aug;16(8):1645-1657. doi: 10.1158/1535-7163.MCT-16-0564. Epub 2017 May 31.

7.

Port Site Recurrence Following a Robotic Laparoscopic Radical Nephroureterectomy for Sarcomatoid Variant of Urothelial Carcinoma.

Katz JE, Bivalacqua TJ, Hahn NM, Sopko NA.

Urol Case Rep. 2017 Apr 27;13:82-84. doi: 10.1016/j.eucr.2016.10.015. eCollection 2017 Jul.

8.

Virtualization of Legacy Instrumentation Control Computers for Improved Reliability, Operational Life, and Management.

Katz JE.

Methods Mol Biol. 2017;1550:309-324. doi: 10.1007/978-1-4939-6747-6_21.

PMID:
28188538
9.

Risk Factors for Intrapartum Fever in Term Gestations and Associated Maternal and Neonatal Sequelae.

Burgess APH, Katz JE, Moretti M, Lakhi N.

Gynecol Obstet Invest. 2017;82(5):508-516. doi: 10.1159/000453611. Epub 2017 Jan 20.

10.

Anesthetic Management of Peripartum Right Ventricular Outflow Tract Tachycardia.

Pimentel MP, Bobb LE, Shimada YJ, Gerhard-Herman M, Katz JE, Palanisamy A.

A A Case Rep. 2015 Sep 1;5(5):72-4. doi: 10.1213/XAA.0000000000000178.

PMID:
26323033
11.

Ultrafast electron and energy transfer in dye-sensitized iron oxide and oxyhydroxide nanoparticles.

Gilbert B, Katz JE, Huse N, Zhang X, Frandsen C, Falcone RW, Waychunas GA.

Phys Chem Chem Phys. 2013 Oct 28;15(40):17303-13. doi: 10.1039/c3cp53368a.

PMID:
24018485
12.

The cancer patient's use and appreciation of the internet and other modern means of communication.

Katz JE, Roberge D, Coulombe G.

Technol Cancer Res Treat. 2014 Oct;13(5):477-84. doi: 10.7785/tcrtexpress.2013.600267. Epub 2013 Aug 31.

13.

A physical sciences network characterization of non-tumorigenic and metastatic cells.

Physical Sciences - Oncology Centers Network, Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH.

Sci Rep. 2013;3:1449. doi: 10.1038/srep01449.

14.

A cross-platform toolkit for mass spectrometry and proteomics.

Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P.

Nat Biotechnol. 2012 Oct;30(10):918-20. doi: 10.1038/nbt.2377. No abstract available.

15.

Thin water film formation on metal oxide crystal surfaces.

Gilbert B, Katz JE, Rude B, Glover TE, Hertlein MP, Kurz C, Zhang X.

Langmuir. 2012 Oct 9;28(40):14308-12. doi: 10.1021/la303198z. Epub 2012 Sep 27.

PMID:
22985328
16.

Electron small polarons and their mobility in iron (oxyhydr)oxide nanoparticles.

Katz JE, Zhang X, Attenkofer K, Chapman KW, Frandsen C, Zarzycki P, Rosso KM, Falcone RW, Waychunas GA, Gilbert B.

Science. 2012 Sep 7;337(6099):1200-3. doi: 10.1126/science.1223598.

17.

Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition.

Kani K, Faca VM, Hughes LD, Zhang W, Fang Q, Shahbaba B, Luethy R, Erde J, Schmidt J, Pitteri SJ, Zhang Q, Katz JE, Gross ME, Plevritis SK, McIntosh MW, Jain A, Hanash S, Agus DB, Mallick P.

Mol Cancer Ther. 2012 May;11(5):1071-81. doi: 10.1158/1535-7163.MCT-11-0852. Epub 2012 Mar 12.

18.

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R.

Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1.

19.

Model-based discovery of circulating biomarkers.

Vogelsang MS, Kani K, Katz JE, Mallick P.

Methods Mol Biol. 2011;728:87-107. doi: 10.1007/978-1-61779-068-3_5.

PMID:
21468942
20.

Peptide identification from mixture tandem mass spectra.

Wang J, Pérez-Santiago J, Katz JE, Mallick P, Bandeira N.

Mol Cell Proteomics. 2010 Jul;9(7):1476-85. doi: 10.1074/mcp.M000136-MCP201. Epub 2010 Mar 27.

21.

Precursor-ion mass re-estimation improves peptide identification on hybrid instruments.

Luethy R, Kessner DE, Katz JE, Maclean B, Grothe R, Kani K, Faça V, Pitteri S, Hanash S, Agus DB, Mallick P.

J Proteome Res. 2008 Sep;7(9):4031-9. doi: 10.1021/pr800307m. Epub 2008 Aug 16.

22.

Public views of mobile medical devices and services: a US national survey of consumer sentiments towards RFID healthcare technology.

Katz JE, Rice RE.

Int J Med Inform. 2009 Feb;78(2):104-14. doi: 10.1016/j.ijmedinf.2008.06.001. Epub 2008 Jul 10.

PMID:
18619897
23.

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.

Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB.

J Proteome Res. 2008 Jan;7(1):96-103. Epub 2007 Aug 21.

24.

Clinical proteomics: the promises and challenges of mass spectrometry-based biomarker discovery.

deVera IE, Katz JE, Agus DB.

Clin Adv Hematol Oncol. 2006 Jul;4(7):541-9.

PMID:
17147241
25.

Yeast Hsl7 (histone synthetic lethal 7) catalyses the in vitro formation of omega-N(G)-monomethylarginine in calf thymus histone H2A.

Miranda TB, Sayegh J, Frankel A, Katz JE, Miranda M, Clarke S.

Biochem J. 2006 May 1;395(3):563-70.

26.

A perspective on protein profiling of blood.

Katz JE, Mallick P, Agus DB.

BJU Int. 2005 Sep;96(4):477-82. Review. No abstract available.

27.
28.

Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics.

Whitelegge JP, Katz JE, Pihakari KA, Hale R, Aguilera R, Gómez SM, Faull KF, Vavilin D, Vermaas W.

Phytochemistry. 2004 Jun;65(11):1507-15.

PMID:
15276448
29.

3-Isopropylmalate is the major endogenous substrate of the Saccharomyces cerevisiae trans-aconitate methyltransferase.

Katz JE, Dumlao DS, Wasserman JI, Lansdown MG, Jung ME, Faull KF, Clarke S.

Biochemistry. 2004 May 25;43(20):5976-86.

PMID:
15147181
31.

Automated identification of putative methyltransferases from genomic open reading frames.

Katz JE, Dlakić M, Clarke S.

Mol Cell Proteomics. 2003 Aug;2(8):525-40. Epub 2003 Jul 18.

32.

Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity.

Mura C, Katz JE, Clarke SG, Eisenberg D.

J Mol Biol. 2003 Mar 7;326(5):1559-75. Erratum in: J Mol Biol. 2003 Apr 25;328(2):517.

PMID:
12595266
33.

Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase.

Zhang RG, Skarina T, Katz JE, Beasley S, Khachatryan A, Vyas S, Arrowsmith CH, Clarke S, Edwards A, Joachimiak A, Savchenko A.

Structure. 2001 Nov;9(11):1095-106.

34.

Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its L-isoaspartyl peptide substrate.

Griffith SC, Sawaya MR, Boutz DR, Thapar N, Katz JE, Clarke S, Yeates TO.

J Mol Biol. 2001 Nov 9;313(5):1103-16.

PMID:
11700066
35.
36.

Then and now: my 20 years on the firing line.

Katz JE.

Ann Emerg Med. 2001 Jan;37(1):112-3. No abstract available.

PMID:
11145784
37.

Direct observation of native DNA structures with the scanning tunneling microscope.

Beebe TP Jr, Wilson TE, Ogletree DF, Katz JE, Balhorn R, Salmeron MB, Siekhaus WJ.

Science. 1989 Jan 20;243(4889):370-2.

PMID:
2911747

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