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Items: 24

1.

Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.

Cosmanescu F, Katsamba PS, Sergeeva AP, Ahlsen G, Patel SD, Brewer JJ, Tan L, Xu S, Xiao Q, Nagarkar-Jaiswal S, Nern A, Bellen HJ, Zipursky SL, Honig B, Shapiro L.

Neuron. 2018 Dec 19;100(6):1385-1400.e6. doi: 10.1016/j.neuron.2018.10.046. Epub 2018 Nov 19.

PMID:
30467080
2.

Interactions between the Ig-Superfamily Proteins DIP-α and Dpr6/10 Regulate Assembly of Neural Circuits.

Xu S, Xiao Q, Cosmanescu F, Sergeeva AP, Yoo J, Lin Y, Katsamba PS, Ahlsen G, Kaufman J, Linaval NT, Lee PT, Bellen HJ, Shapiro L, Honig B, Tan L, Zipursky SL.

Neuron. 2018 Dec 19;100(6):1369-1384.e6. doi: 10.1016/j.neuron.2018.11.001. Epub 2018 Nov 19.

PMID:
30467079
3.

Mechanotransduction by PCDH15 Relies on a Novel cis-Dimeric Architecture.

Dionne G, Qiu X, Rapp M, Liang X, Zhao B, Peng G, Katsamba PS, Ahlsen G, Rubinstein R, Potter CS, Carragher B, Honig B, Müller U, Shapiro L.

Neuron. 2018 Aug 8;99(3):480-492.e5. doi: 10.1016/j.neuron.2018.07.006. Epub 2018 Jul 26.

4.

Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.

Brasch J, Katsamba PS, Harrison OJ, Ahlsén G, Troyanovsky RB, Indra I, Kaczynska A, Kaeser B, Troyanovsky S, Honig B, Shapiro L.

Cell Rep. 2018 May 8;23(6):1840-1852. doi: 10.1016/j.celrep.2018.04.012.

5.

Molecular basis of sidekick-mediated cell-cell adhesion and specificity.

Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsén G, Sergeeva AP, Honig B, Sanes JR, Shapiro L.

Elife. 2016 Sep 19;5. pii: e19058. doi: 10.7554/eLife.19058.

6.

Structural basis of adhesive binding by desmocollins and desmogleins.

Harrison OJ, Brasch J, Lasso G, Katsamba PS, Ahlsen G, Honig B, Shapiro L.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7160-5. doi: 10.1073/pnas.1606272113. Epub 2016 Jun 13.

7.

Structural and energetic determinants of adhesive binding specificity in type I cadherins.

Vendome J, Felsovalyi K, Song H, Yang Z, Jin X, Brasch J, Harrison OJ, Ahlsen G, Bahna F, Kaczynska A, Katsamba PS, Edmond D, Hubbell WL, Shapiro L, Honig B.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):E4175-84. doi: 10.1073/pnas.1416737111. Epub 2014 Sep 24.

8.

Nectin ectodomain structures reveal a canonical adhesive interface.

Harrison OJ, Vendome J, Brasch J, Jin X, Hong S, Katsamba PS, Ahlsen G, Troyanovsky RB, Troyanovsky SM, Honig B, Shapiro L.

Nat Struct Mol Biol. 2012 Sep;19(9):906-15. doi: 10.1038/nsmb.2366. Epub 2012 Aug 19.

9.

Splice form dependence of beta-neurexin/neuroligin binding interactions.

Koehnke J, Katsamba PS, Ahlsen G, Bahna F, Vendome J, Honig B, Shapiro L, Jin X.

Neuron. 2010 Jul 15;67(1):61-74. doi: 10.1016/j.neuron.2010.06.001.

10.

T-cadherin structures reveal a novel adhesive binding mechanism.

Ciatto C, Bahna F, Zampieri N, VanSteenhouse HC, Katsamba PS, Ahlsen G, Harrison OJ, Brasch J, Jin X, Posy S, Vendome J, Ranscht B, Jessell TM, Honig B, Shapiro L.

Nat Struct Mol Biol. 2010 Mar;17(3):339-47. doi: 10.1038/nsmb.1781. Epub 2010 Feb 28.

11.

Two-step adhesive binding by classical cadherins.

Harrison OJ, Bahna F, Katsamba PS, Jin X, Brasch J, Vendome J, Ahlsen G, Carroll KJ, Price SR, Honig B, Shapiro L.

Nat Struct Mol Biol. 2010 Mar;17(3):348-57. doi: 10.1038/nsmb.1784. Epub 2010 Feb 28.

12.

A global benchmark study using affinity-based biosensors.

Rich RL, Papalia GA, Flynn PJ, Furneisen J, Quinn J, Klein JS, Katsamba PS, Waddell MB, Scott M, Thompson J, Berlier J, Corry S, Baltzinger M, Zeder-Lutz G, Schoenemann A, Clabbers A, Wieckowski S, Murphy MM, Page P, Ryan TE, Duffner J, Ganguly T, Corbin J, Gautam S, Anderluh G, Bavdek A, Reichmann D, Yadav SP, Hommema E, Pol E, Drake A, Klakamp S, Chapman T, Kernaghan D, Miller K, Schuman J, Lindquist K, Herlihy K, Murphy MB, Bohnsack R, Andrien B, Brandani P, Terwey D, Millican R, Darling RJ, Wang L, Carter Q, Dotzlaf J, Lopez-Sagaseta J, Campbell I, Torreri P, Hoos S, England P, Liu Y, Abdiche Y, Malashock D, Pinkerton A, Wong M, Lafer E, Hinck C, Thompson K, Primo CD, Joyce A, Brooks J, Torta F, Bagge Hagel AB, Krarup J, Pass J, Ferreira M, Shikov S, Mikolajczyk M, Abe Y, Barbato G, Giannetti AM, Krishnamoorthy G, Beusink B, Satpaev D, Tsang T, Fang E, Partridge J, Brohawn S, Horn J, Pritsch O, Obal G, Nilapwar S, Busby B, Gutierrez-Sanchez G, Gupta RD, Canepa S, Witte K, Nikolovska-Coleska Z, Cho YH, D'Agata R, Schlick K, Calvert R, Munoz EM, Hernaiz MJ, Bravman T, Dines M, Yang MH, Puskas A, Boni E, Li J, Wear M, Grinberg A, Baardsnes J, Dolezal O, Gainey M, Anderson H, Peng J, Lewis M, Spies P, Trinh Q, Bibikov S, Raymond J, Yousef M, Chandrasekaran V, Feng Y, Emerick A, Mundodo S, Guimaraes R, McGirr K, Li YJ, Hughes H, Mantz H, Skrabana R, Witmer M, Ballard J, Martin L, Skladal P, Korza G, Laird-Offringa I, Lee CS, Khadir A, Podlaski F, Neuner P, Rothacker J, Rafique A, Dankbar N, Kainz P, Gedig E, Vuyisich M, Boozer C, Ly N, Toews M, Uren A, Kalyuzhniy O, Lewis K, Chomey E, Pak BJ, Myszka DG.

Anal Biochem. 2009 Mar 15;386(2):194-216. doi: 10.1016/j.ab.2008.11.021. Epub 2008 Nov 27.

13.

Crystal structures of beta-neurexin 1 and beta-neurexin 2 ectodomains and dynamics of splice insertion sequence 4.

Koehnke J, Jin X, Trbovic N, Katsamba PS, Brasch J, Ahlsen G, Scheiffele P, Honig B, Palmer AG 3rd, Shapiro L.

Structure. 2008 Mar;16(3):410-21. doi: 10.1016/j.str.2007.12.024.

14.

Continuous-flow microfluidic printing of proteins for array-based applications including surface plasmon resonance imaging.

Natarajan S, Katsamba PS, Miles A, Eckman J, Papalia GA, Rich RL, Gale BK, Myszka DG.

Anal Biochem. 2008 Feb 1;373(1):141-6. Epub 2007 Aug 19.

PMID:
17868635
15.

Comparative analysis of 10 small molecules binding to carbonic anhydrase II by different investigators using Biacore technology.

Papalia GA, Leavitt S, Bynum MA, Katsamba PS, Wilton R, Qiu H, Steukers M, Wang S, Bindu L, Phogat S, Giannetti AM, Ryan TE, Pudlak VA, Matusiewicz K, Michelson KM, Nowakowski A, Pham-Baginski A, Brooks J, Tieman BC, Bruce BD, Vaughn M, Baksh M, Cho YH, Wit MD, Smets A, Vandersmissen J, Michiels L, Myszka DG.

Anal Biochem. 2006 Dec 1;359(1):94-105. Epub 2006 Sep 7.

PMID:
17007806
16.

Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users.

Katsamba PS, Navratilova I, Calderon-Cacia M, Fan L, Thornton K, Zhu M, Bos TV, Forte C, Friend D, Laird-Offringa I, Tavares G, Whatley J, Shi E, Widom A, Lindquist KC, Klakamp S, Drake A, Bohmann D, Roell M, Rose L, Dorocke J, Roth B, Luginbühl B, Myszka DG.

Anal Biochem. 2006 May 15;352(2):208-21. Epub 2006 Feb 23.

PMID:
16564019
17.

The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA.

Law MJ, Linde ME, Chambers EJ, Oubridge C, Katsamba PS, Nilsson L, Haworth IS, Laird-Offringa IA.

Nucleic Acids Res. 2006 Jan 10;34(1):275-85. Print 2006.

18.

Analyzing a kinetic titration series using affinity biosensors.

Karlsson R, Katsamba PS, Nordin H, Pol E, Myszka DG.

Anal Biochem. 2006 Feb 1;349(1):136-47. Epub 2005 Oct 13.

PMID:
16337141
19.

Phosphoinositide-containing polymerized liposomes: stable membrane-mimetic vesicles for protein-lipid binding analysis.

Ferguson CG, James RD, Bigman CS, Shepard DA, Abdiche Y, Katsamba PS, Myszka DG, Prestwich GD.

Bioconjug Chem. 2005 Nov-Dec;16(6):1475-83.

PMID:
16287244
20.

Eosinophil-granule major basic protein, a C-type lectin, binds heparin.

Swaminathan GJ, Myszka DG, Katsamba PS, Ohnuki LE, Gleich GJ, Acharya KR.

Biochemistry. 2005 Nov 1;44(43):14152-8.

PMID:
16245931
21.

Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interaction.

Law MJ, Chambers EJ, Katsamba PS, Haworth IS, Laird-Offringa IA.

Nucleic Acids Res. 2005 May 24;33(9):2917-28. Print 2005.

22.

Complex role of the beta 2-beta 3 loop in the interaction of U1A with U1 hairpin II RNA.

Katsamba PS, Bayramyan M, Haworth IS, Myszka DG, Laird-Offringa IA.

J Biol Chem. 2002 Sep 6;277(36):33267-74. Epub 2002 Jun 24.

23.

Kinetic studies of RNA-protein interactions using surface plasmon resonance.

Katsamba PS, Park S, Laird-Offringa IA.

Methods. 2002 Feb;26(2):95-104. Review.

PMID:
12054886
24.

Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA.

Katsamba PS, Myszka DG, Laird-Offringa IA.

J Biol Chem. 2001 Jun 15;276(24):21476-81. Epub 2001 Apr 10.

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