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Items: 1 to 50 of 86

1.

CRISPR/Cas9-mediated gene replacement in the basidiomycetous yeast Pseudozyma antarctica.

Kunitake E, Tanaka T, Ueda H, Endo A, Yarimizu T, Katoh E, Kitamoto H.

Fungal Genet Biol. 2019 Sep;130:82-90. doi: 10.1016/j.fgb.2019.04.012. Epub 2019 Apr 23.

PMID:
31026589
2.

Primary Mediastinal HER2-positive Apocrine Carcinoma in Mature Teratoma Treated With Anti-HER2 Therapy and Chemoradiation.

Sugiyama K, Iwakoshi A, Satoh M, Shiraishi K, Nozawa K, Kogure Y, Kitagawa C, Moritani S, Katoh E, Saka H.

In Vivo. 2019 Mar-Apr;33(2):551-557. doi: 10.21873/invivo.11509.

3.

Physical and thermodynamic characterization of the rice gibberellin receptor/gibberellin/DELLA protein complex.

Xiang H, Okamura H, Kezuka Y, Katoh E.

Sci Rep. 2018 Dec 7;8(1):17719. doi: 10.1038/s41598-018-35765-x.

4.

Purification and functional characterization of tomato mosaic virus 130K protein expressed in silkworm pupae using a baculovirus vector.

Kobayashi C, Kato M, Nagaya H, Shimizu N, Ishibashi K, Ishikawa M, Katoh E.

Protein Expr Purif. 2019 Feb;154:85-90. doi: 10.1016/j.pep.2018.10.001. Epub 2018 Oct 3.

PMID:
30291968
5.

Significance of H461 at subsite +1 in substrate binding and transglucosylation activity of amylomaltase from Corynebacterium glutamicum.

Tumhom S, Krusong K, Kidokoro SI, Katoh E, Pongsawasdi P.

Arch Biochem Biophys. 2018 Aug 15;652:3-8. doi: 10.1016/j.abb.2018.06.002. Epub 2018 Jun 6.

PMID:
29885290
6.

A combination of 19F NMR and surface plasmon resonance for site-specific hit selection and validation of fragment molecules that bind to the ATP-binding site of a kinase.

Nagatoishi S, Yamaguchi S, Katoh E, Kajita K, Yokotagawa T, Kanai S, Furuya T, Tsumoto K.

Bioorg Med Chem. 2018 May 1;26(8):1929-1938. doi: 10.1016/j.bmc.2018.02.041. Epub 2018 Feb 22.

PMID:
29510947
7.

Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.

Nishizawa Y, Mochizuki S, Koiwai H, Kondo K, Kishimoto K, Katoh E, Minami E.

Plant Signal Behav. 2015;10(3):e990801. doi: 10.4161/15592324.2014.990801.

8.

Thermodynamic analysis of unusually thermostable CutA1 protein from human brain and its protease susceptibility.

Bagautdinov B, Matsuura Y, Yamamoto H, Sawano M, Ogasahara K, Takehira M, Kunishima N, Katoh E, Yutani K.

J Biochem. 2015 Mar;157(3):169-76. doi: 10.1093/jb/mvu062. Epub 2014 Oct 24.

PMID:
25344844
9.

Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1.

Ishibashi K, Kezuka Y, Kobayashi C, Kato M, Inoue T, Nonaka T, Ishikawa M, Matsumura H, Katoh E.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3486-95. doi: 10.1073/pnas.1407888111. Epub 2014 Aug 4.

10.

Crystallization and preliminary X-ray crystallographic analysis of the inhibitory domain of the tomato mosaic virus resistance protein Tm-1.

Kato M, Kezuka Y, Kobayashi C, Ishibashi K, Nonaka T, Ishikawa M, Katoh E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Dec;69(Pt 12):1411-4. doi: 10.1107/S1744309113030819. Epub 2013 Nov 29.

11.

RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.

Toda Y, Tanaka M, Ogawa D, Kurata K, Kurotani K, Habu Y, Ando T, Sugimoto K, Mitsuda N, Katoh E, Abe K, Miyao A, Hirochika H, Hattori T, Takeda S.

Plant Cell. 2013 May;25(5):1709-25. doi: 10.1105/tpc.113.112052. Epub 2013 May 28.

12.

Sensory biology and behaviour of Nephrops norvegicus.

Katoh E, Sbragaglia V, Aguzzi J, Breithaupt T.

Adv Mar Biol. 2013;64:65-106. doi: 10.1016/B978-0-12-410466-2.00003-0. Review.

PMID:
23668588
13.

Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.

Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.

Nat Genet. 2013 Jun;45(6):707-11. doi: 10.1038/ng.2612. Epub 2013 Apr 14.

PMID:
23583977
14.

Expression, purification, and functional characterization of an N-terminal fragment of the tomato mosaic virus resistance protein Tm-1.

Kato M, Ishibashi K, Kobayashi C, Ishikawa M, Katoh E.

Protein Expr Purif. 2013 May;89(1):1-6. doi: 10.1016/j.pep.2013.02.001. Epub 2013 Feb 13.

PMID:
23415925
15.

Host membrane proteins involved in the replication of tobamovirus RNA.

Ishibashi K, Miyashita S, Katoh E, Ishikawa M.

Curr Opin Virol. 2012 Dec;2(6):699-704. doi: 10.1016/j.coviro.2012.09.011. Epub 2012 Oct 11. Review.

PMID:
23063494
16.

Conformational dynamics of yeast calmodulin in the Ca(2+)-bound state probed using NMR relaxation dispersion.

Ogura K, Okamura H, Katahira M, Katoh E, Inagaki F.

FEBS Lett. 2012 Jul 30;586(16):2548-54. doi: 10.1016/j.febslet.2012.06.031. Epub 2012 Jun 28.

17.

Crystal structure of the superfamily 1 helicase from Tomato mosaic virus.

Nishikiori M, Sugiyama S, Xiang H, Niiyama M, Ishibashi K, Inoue T, Ishikawa M, Matsumura H, Katoh E.

J Virol. 2012 Jul;86(14):7565-76. doi: 10.1128/JVI.00118-12. Epub 2012 May 9.

18.

A host small GTP-binding protein ARL8 plays crucial roles in tobamovirus RNA replication.

Nishikiori M, Mori M, Dohi K, Okamura H, Katoh E, Naito S, Meshi T, Ishikawa M.

PLoS Pathog. 2011 Dec;7(12):e1002409. doi: 10.1371/journal.ppat.1002409. Epub 2011 Dec 8.

19.

Crystallization and preliminary X-ray crystallographic analysis of a helicase-like domain from a tomato mosaic virus replication protein.

Xiang H, Niiyama M, Sugiyama S, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Ishikawa M, Matsumura H, Katoh E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt 12):1649-52. doi: 10.1107/S174430911104231X. Epub 2011 Nov 30.

20.

Role of charged residues in stabilization of Pyrococcus horikoshii CutA1, which has a denaturation temperature of nearly 150 °C.

Matsuura Y, Takehira M, Sawano M, Ogasahara K, Tanaka T, Yamamoto H, Kunishima N, Katoh E, Yutani K.

FEBS J. 2012 Jan;279(1):78-90. doi: 10.1111/j.1742-4658.2011.08400.x. Epub 2011 Nov 14.

21.

Expression, purification, and functional characterization of a stable helicase domain from a tomato mosaic virus replication protein.

Xiang H, Ishibashi K, Nishikiori M, Jaudal MC, Ishikawa M, Katoh E.

Protein Expr Purif. 2012 Jan;81(1):89-95. doi: 10.1016/j.pep.2011.09.002. Epub 2011 Sep 20.

PMID:
21964444
22.

Interaction of a goose-type lysozyme with chitin oligosaccharides as determined by NMR spectroscopy.

Shinya S, Ohnuma T, Kawamura S, Torikata T, Nishimura S, Katoh E, Fukamizo T.

J Biochem. 2011 Nov;150(5):569-77. doi: 10.1093/jb/mvr101. Epub 2011 Aug 22.

PMID:
21859795
23.

Interconversion of two GDP-bound conformations and their selection in an Arf-family small G protein.

Okamura H, Nishikiori M, Xiang H, Ishikawa M, Katoh E.

Structure. 2011 Jul 13;19(7):988-98. doi: 10.1016/j.str.2011.04.007.

24.

Thermodynamic and structural properties of the acid molten globule state of horse cytochrome C.

Nakamura S, Seki Y, Katoh E, Kidokoro S.

Biochemistry. 2011 Apr 19;50(15):3116-26. doi: 10.1021/bi101806b. Epub 2011 Mar 25.

PMID:
21388230
25.

Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations.

Xiang H, Takeuchi H, Tsunoda Y, Nakajima M, Murata K, Ueguchi-Tanaka M, Kidokoro S, Kezuka Y, Nonaka T, Matsuoka M, Katoh E.

J Mol Recognit. 2011 Mar-Apr;24(2):275-82. doi: 10.1002/jmr.1049.

PMID:
21360613
26.

Polydispersity as a parameter for indicating the thermal stability of proteins by dynamic light scattering.

Shiba K, Niidome T, Katoh E, Xiang H, Han L, Mori T, Katayama Y.

Anal Sci. 2010;26(6):659-63.

27.

CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings.

Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A, Yamaguchi J.

Plant J. 2009 Dec;60(5):852-64. doi: 10.1111/j.1365-313X.2009.04006.x. Epub 2009 Aug 21.

28.

Differential expression and affinities of Arabidopsis gibberellin receptors can explain variation in phenotypes of multiple knock-out mutants.

Suzuki H, Park SH, Okubo K, Kitamura J, Ueguchi-Tanaka M, Iuchi S, Katoh E, Kobayashi M, Yamaguchi I, Matsuoka M, Asami T, Nakajima M.

Plant J. 2009 Oct;60(1):48-55. doi: 10.1111/j.1365-313X.2009.03936.x. Epub 2009 May 27.

29.

EL5 is involved in root development as an anti-cell death ubiquitin ligase.

Nishizawa Y, Katoh S, Koiwai H, Katoh E.

Plant Signal Behav. 2008 Feb;3(2):148-50.

30.

Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures.

Sawano M, Yamamoto H, Ogasahara K, Kidokoro S, Katoh S, Ohnuma T, Katoh E, Yokoyama S, Yutani K.

Biochemistry. 2008 Jan 15;47(2):721-30. Epub 2007 Dec 22.

PMID:
18154307
31.

LysM domains from Pteris ryukyuensis chitinase-A: a stability study and characterization of the chitin-binding site.

Ohnuma T, Onaga S, Murata K, Taira T, Katoh E.

J Biol Chem. 2008 Feb 22;283(8):5178-87. Epub 2007 Dec 14.

32.

The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens.

Hirano K, Nakajima M, Asano K, Nishiyama T, Sakakibara H, Kojima M, Katoh E, Xiang H, Tanahashi T, Hasebe M, Banks JA, Ashikari M, Kitano H, Ueguchi-Tanaka M, Matsuoka M.

Plant Cell. 2007 Oct;19(10):3058-79. Epub 2007 Oct 26.

33.

Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin.

Ueguchi-Tanaka M, Nakajima M, Katoh E, Ohmiya H, Asano K, Saji S, Hongyu X, Ashikari M, Kitano H, Yamaguchi I, Matsuoka M.

Plant Cell. 2007 Jul;19(7):2140-55. Epub 2007 Jul 20.

34.

Flagellin glycans from two pathovars of Pseudomonas syringae contain rhamnose in D and L configurations in different ratios and modified 4-amino-4,6-dideoxyglucose.

Takeuchi K, Ono H, Yoshida M, Ishii T, Katoh E, Taguchi F, Miki R, Murata K, Kaku H, Ichinose Y.

J Bacteriol. 2007 Oct;189(19):6945-56. Epub 2007 Jul 20.

35.

RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice.

Koiwai H, Tagiri A, Katoh S, Katoh E, Ichikawa H, Minami E, Nishizawa Y.

Plant J. 2007 Jul;51(1):92-104. Epub 2007 Jun 8.

36.

[Transtrochanteric rotational osteotomy for the treatment of non-traumatic osteonecrosis of the femoral head].

Atsumi T, Kajiwara T, Hiranuma Y, Tamaoki S, Nakamura K, Asakura Y, Nakanishi R, Katoh E, Watanabe M.

Clin Calcium. 2007 Jun;17(6):923-30. Review. Japanese.

PMID:
17548933
37.

The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR.

Saio T, Kumeta H, Ogura K, Yokochi M, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F.

J Biochem. 2007 Jul;142(1):113-21. Epub 2007 Jun 1.

PMID:
17545250
38.

[The role of the pharmacist to an inpatient in order to switch from inpatient treatment to a home-based care of an outpatient--the usefulness of a patient record notebook in cancer chemotherapy].

Andoh N, Katoh E, Katoh J, Kikuno F, Sakuyama T, Uno S, Hirano A, Inoue D, Kobayashi T, Mouri J, Aiba K.

Gan To Kagaku Ryoho. 2006 Dec;33 Suppl 2:315-7. Japanese.

PMID:
17469372
39.

The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.

Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F.

J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13.

PMID:
17431550
40.

Hyper-thermostability of CutA1 protein, with a denaturation temperature of nearly 150 degrees C.

Tanaka T, Sawano M, Ogasahara K, Sakaguchi Y, Bagautdinov B, Katoh E, Kuroishi C, Shinkai A, Yokoyama S, Yutani K.

FEBS Lett. 2006 Jul 24;580(17):4224-30. Epub 2006 Jul 5.

41.

Topical application of gamma-tocopherol derivative prevents UV-induced skin pigmentation.

Kuwabara Y, Watanabe T, Yasuoka S, Fukui K, Takata J, Karube Y, Okamoto Y, Asano S, Katoh E, Tsuzuki T, Kobayashi S.

Biol Pharm Bull. 2006 Jun;29(6):1175-9.

42.

Identification and characterization of Arabidopsis gibberellin receptors.

Nakajima M, Shimada A, Takashi Y, Kim YC, Park SH, Ueguchi-Tanaka M, Suzuki H, Katoh E, Iuchi S, Kobayashi M, Maeda T, Matsuoka M, Yamaguchi I.

Plant J. 2006 Jun;46(5):880-9.

43.

Identification of glycosylation genes and glycosylated amino acids of flagellin in Pseudomonas syringae pv. tabaci.

Taguchi F, Takeuchi K, Katoh E, Murata K, Suzuki T, Marutani M, Kawasaki T, Eguchi M, Katoh S, Kaku H, Yasuda C, Inagaki Y, Toyoda K, Shiraishi T, Ichinose Y.

Cell Microbiol. 2006 Jun;8(6):923-38.

44.

Improved expression, purification and crystallization of a putative N-acetyl-gamma-glutamyl-phosphate reductase from rice (Oryza sativa).

Miura-Ohnuma J, Nonaka T, Katoh S, Murata K, Kita A, Miki K, Katoh E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Dec 1;61(Pt 12):1058-61. Epub 2005 Nov 24.

45.

Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa).

Nonaka T, Kita A, Miura-Ohnuma J, Katoh E, Inagaki N, Yamazaki T, Miki K.

Proteins. 2005 Dec 1;61(4):1137-40. No abstract available.

PMID:
16240442
46.

GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.

Ueguchi-Tanaka M, Ashikari M, Nakajima M, Itoh H, Katoh E, Kobayashi M, Chow TY, Hsing YI, Kitano H, Yamaguchi I, Matsuoka M.

Nature. 2005 Sep 29;437(7059):693-8.

PMID:
16193045
47.

Active site residues and amino acid specificity of the ubiquitin carrier protein-binding RING-H2 finger domain.

Katoh S, Tsunoda Y, Murata K, Minami E, Katoh E.

J Biol Chem. 2005 Dec 9;280(49):41015-24. Epub 2005 Sep 26.

48.

Refolding and purification of recombinant OsNifU1A domain II that was expressed by Escherichia coli.

Katoh S, Murata K, Kubota Y, Kumeta H, Ogura K, Inagaki F, Asayama M, Katoh E.

Protein Expr Purif. 2005 Oct;43(2):149-56.

PMID:
15978837
49.

Improving expression and solubility of rice proteins produced as fusion proteins in Escherichia coli.

Tsunoda Y, Sakai N, Kikuchi K, Katoh S, Akagi K, Miura-Ohnuma J, Tashiro Y, Murata K, Shibuya N, Katoh E.

Protein Expr Purif. 2005 Aug;42(2):268-77.

PMID:
15914031
50.

1H, 15N and 13C backbone and side-chain assignments of the rice phytochrome B PAS1 domain and backbone assignments of the PAS1-PAS2 domain.

Kobayashi T, Mishima M, Akagi K, Sakai N, Katoh E, Takano M, Yamazaki T, Kojima C.

J Biomol NMR. 2005 Mar;31(3):269-70. No abstract available.

PMID:
15803406

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