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Items: 14

1.

Proteomic-based detection of a protein cluster dysregulated during cardiovascular development identifies biomarkers of congenital heart defects.

Nath AK, Krauthammer M, Li P, Davidov E, Butler LC, Copel J, Katajamaa M, Oresic M, Buhimschi I, Buhimschi C, Snyder M, Madri JA.

PLoS One. 2009;4(1):e4221. doi: 10.1371/journal.pone.0004221. Epub 2009 Jan 19.

2.

Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes.

Oresic M, Simell S, Sysi-Aho M, Näntö-Salonen K, Seppänen-Laakso T, Parikka V, Katajamaa M, Hekkala A, Mattila I, Keskinen P, Yetukuri L, Reinikainen A, Lähde J, Suortti T, Hakalax J, Simell T, Hyöty H, Veijola R, Ilonen J, Lahesmaa R, Knip M, Simell O.

J Exp Med. 2008 Dec 22;205(13):2975-84. doi: 10.1084/jem.20081800. Epub 2008 Dec 15.

3.

Quantitative proteomics reveals GIMAP family proteins 1 and 4 to be differentially regulated during human T helper cell differentiation.

Filén JJ, Filén S, Moulder R, Tuomela S, Ahlfors H, West A, Kouvonen P, Kantola S, Björkman M, Katajamaa M, Rasool O, Nyman TA, Lahesmaa R.

Mol Cell Proteomics. 2009 Jan;8(1):32-44. doi: 10.1074/mcp.M800139-MCP200. Epub 2008 Aug 12.

4.

Data processing for mass spectrometry-based metabolomics.

Katajamaa M, Oresic M.

J Chromatogr A. 2007 Jul 27;1158(1-2):318-28. Epub 2007 Apr 19. Review.

PMID:
17466315
5.

Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis.

Yetukuri L, Katajamaa M, Medina-Gomez G, Seppänen-Laakso T, Vidal-Puig A, Oresic M.

BMC Syst Biol. 2007 Feb 15;1:12.

6.

Normalization method for metabolomics data using optimal selection of multiple internal standards.

Sysi-Aho M, Katajamaa M, Yetukuri L, Oresic M.

BMC Bioinformatics. 2007 Mar 15;8:93.

7.

A systems biology strategy reveals biological pathways and plasma biomarker candidates for potentially toxic statin-induced changes in muscle.

Laaksonen R, Katajamaa M, Päivä H, Sysi-Aho M, Saarinen L, Junni P, Lütjohann D, Smet J, Van Coster R, Seppänen-Laakso T, Lehtimäki T, Soini J, Oresic M.

PLoS One. 2006 Dec 20;1:e97.

8.

Improving identification of differentially expressed genes by integrative analysis of Affymetrix and Illumina arrays.

Elo LL, Katajamaa M, Lund R, Oresic M, Lahesmaa R, Aittokallio T.

OMICS. 2006 Fall;10(3):369-80.

PMID:
17069514
9.

Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells.

Rischer H, Oresic M, Seppänen-Laakso T, Katajamaa M, Lammertyn F, Ardiles-Diaz W, Van Montagu MC, Inzé D, Oksman-Caldentey KM, Goossens A.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5614-9. Epub 2006 Mar 24.

10.

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data.

Katajamaa M, Miettinen J, Oresic M.

Bioinformatics. 2006 Mar 1;22(5):634-6. Epub 2006 Jan 10.

PMID:
16403790
11.

A human ImmunoChip cDNA microarray provides a comprehensive tool to study immune responses.

Nikula T, West A, Katajamaa M, Lönnberg T, Sara R, Aittokallio T, Nevalainen OS, Lahesmaa R.

J Immunol Methods. 2005 Aug;303(1-2):122-34.

PMID:
16054160
12.

Processing methods for differential analysis of LC/MS profile data.

Katajamaa M, Oresic M.

BMC Bioinformatics. 2005 Jul 18;6:179.

13.

A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments.

Moulder R, Filén JJ, Salmi J, Katajamaa M, Nevalainen OS, Oresic M, Aittokallio T, Lahesmaa R, Nyman TA.

Proteomics. 2005 Jul;5(11):2748-60.

PMID:
15952233
14.

DNA microarray-based gene expression profiles of cytomegalovirus infection and acute rejection in liver transplants.

Inkinen K, Lahesmaa R, Brandt A, Katajamaa M, Halme L, Höckerstedt K, Lautenschlager I.

Transplant Proc. 2005 Mar;37(2):1227-9.

PMID:
15848677

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