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Items: 50

1.

Experimental Evolution of Innovation and Novelty.

Kassen R.

Trends Ecol Evol. 2019 Apr 23. pii: S0169-5347(19)30088-6. doi: 10.1016/j.tree.2019.03.008. [Epub ahead of print] Review.

PMID:
31027838
2.

The emergence, maintenance, and demise of diversity in a spatially variable antibiotic regime.

Leale AM, Kassen R.

Evol Lett. 2018 Mar 17;2(2):134-143. doi: 10.1002/evl3.43. eCollection 2018 Apr.

3.

Rapid diversification of Pseudomonas aeruginosa in cystic fibrosis lung-like conditions.

Schick A, Kassen R.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10714-10719. doi: 10.1073/pnas.1721270115. Epub 2018 Oct 1.

4.

Evolution of Cost-Free Resistance under Fluctuating Drug Selection in Pseudomonas aeruginosa.

Melnyk AH, McCloskey N, Hinz AJ, Dettman J, Kassen R.

mSphere. 2017 Jul 19;2(4). pii: e00158-17. doi: 10.1128/mSphere.00158-17. eCollection 2017 Jul-Aug.

5.

Antagonistic interactions of soil pseudomonads are structured in time.

Kraemer SA, Soucy JR, Kassen R.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix046.

PMID:
28387795
6.

Air-borne genotype by genotype indirect genetic effects are substantial in the filamentous fungus Aspergillus nidulans.

Rode NO, Soroye P, Kassen R, Rundle HD.

Heredity (Edinb). 2017 Jul;119(1):1-7. doi: 10.1038/hdy.2017.9. Epub 2017 Mar 15.

7.

Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra.

Shewaramani S, Finn TJ, Leahy SC, Kassen R, Rainey PB, Moon CD.

PLoS Genet. 2017 Jan 19;13(1):e1006570. doi: 10.1371/journal.pgen.1006570. eCollection 2017 Jan.

8.

Genomics of Compensatory Adaptation in Experimental Populations of Aspergillus nidulans.

Dettman JR, Rodrigue N, Schoustra SE, Kassen R.

G3 (Bethesda). 2017 Feb 9;7(2):427-436. doi: 10.1534/g3.116.036152.

9.

What drives parallel evolution?: How population size and mutational variation contribute to repeated evolution.

Bailey SF, Blanquart F, Bataillon T, Kassen R.

Bioessays. 2017 Jan;39(1):1-9. doi: 10.1002/bies.201600176. Epub 2016 Nov 15.

PMID:
27859467
10.

Temporal patterns of local adaptation in soil pseudomonads.

Kraemer SA, Kassen R.

Proc Biol Sci. 2016 Oct 12;283(1840). pii: 20161652.

11.

Correction to 'Competition both drives and impedes diversification in a model adaptive radiation'.

Bailey SF, Dettman JR, Rainey PB, Kassen R.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160763. doi: 10.1098/rspb.2016.0763. No abstract available.

12.

The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa.

Dettman JR, Sztepanacz JL, Kassen R.

BMC Genomics. 2016 Jan 5;17:27. doi: 10.1186/s12864-015-2244-3.

13.

Evolution of Fitness Trade-Offs in Locally Adapted Populations of Pseudomonas fluorescens.

Schick A, Bailey SF, Kassen R.

Am Nat. 2015 Oct;186 Suppl 1:S48-59. doi: 10.1086/682932. Epub 2015 Aug 31.

PMID:
26656216
14.

The fitness costs of antibiotic resistance mutations.

Melnyk AH, Wong A, Kassen R.

Evol Appl. 2015 Mar;8(3):273-83. doi: 10.1111/eva.12196. Epub 2014 Aug 27. Review.

15.

The effect of selection environment on the probability of parallel evolution.

Bailey SF, Rodrigue N, Kassen R.

Mol Biol Evol. 2015 Jun;32(6):1436-48. doi: 10.1093/molbev/msv033. Epub 2015 Mar 11.

PMID:
25761765
16.

Patterns of local adaptation in space and time among soil bacteria.

Kraemer SA, Kassen R.

Am Nat. 2015 Mar;185(3):317-31. doi: 10.1086/679585. Epub 2015 Jan 27.

PMID:
25674687
17.

Genome-wide patterns of recombination in the opportunistic human pathogen Pseudomonas aeruginosa.

Dettman JR, Rodrigue N, Kassen R.

Genome Biol Evol. 2014 Dec 4;7(1):18-34. doi: 10.1093/gbe/evu260.

18.

Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population.

Bailey SF, Hinz A, Kassen R.

Nat Commun. 2014 Jun 10;5:4076. doi: 10.1038/ncomms5076.

PMID:
24912567
19.

Evolutionary genomics of epidemic and nonepidemic strains of Pseudomonas aeruginosa.

Dettman JR, Rodrigue N, Aaron SD, Kassen R.

Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):21065-70. doi: 10.1073/pnas.1307862110. Epub 2013 Dec 9.

20.

Competition both drives and impedes diversification in a model adaptive radiation.

Bailey SF, Dettman JR, Rainey PB, Kassen R.

Proc Biol Sci. 2013 Sep 7;280(1766):20131253. doi: 10.1098/rspb.2013.1253. Print 2013 Sep 7. Erratum in: Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160763. doi: 10.1098/rspb.2016.0763.

21.

Microbial community structure of three traditional zambian fermented products: mabisi, chibwantu and munkoyo.

Schoustra SE, Kasase C, Toarta C, Kassen R, Poulain AJ.

PLoS One. 2013 May 14;8(5):e63948. doi: 10.1371/journal.pone.0063948. Print 2013.

22.

Multivariate phenotypic divergence due to the fixation of beneficial mutations in experimentally evolved lineages of a filamentous fungus.

Schoustra SE, Punzalan D, Dali R, Rundle HD, Kassen R.

PLoS One. 2012;7(11):e50305. doi: 10.1371/journal.pone.0050305. Epub 2012 Nov 21.

23.

Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa.

Wong A, Rodrigue N, Kassen R.

PLoS Genet. 2012 Sep;8(9):e1002928. doi: 10.1371/journal.pgen.1002928. Epub 2012 Sep 13.

24.

Spatial structure of ecological opportunity drives adaptation in a bacterium.

Bailey SF, Kassen R.

Am Nat. 2012 Aug;180(2):270-83. doi: 10.1086/666609. Epub 2012 Jun 19.

PMID:
22766936
25.

Antagonistic interactions peak at intermediate genetic distance in clinical and laboratory strains of Pseudomonas aeruginosa.

Schoustra SE, Dench J, Dali R, Aaron SD, Kassen R.

BMC Microbiol. 2012 Mar 22;12:40. doi: 10.1186/1471-2180-12-40.

26.

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.

Dettman JR, Rodrigue N, Melnyk AH, Wong A, Bailey SF, Kassen R.

Mol Ecol. 2012 May;21(9):2058-77. doi: 10.1111/j.1365-294X.2012.05484.x. Epub 2012 Feb 14. Review.

PMID:
22332770
27.

If you want to win the game, you must join in.

Kassen R.

Nature. 2011 Dec 7;480(7376):153. doi: 10.1038/480153a. No abstract available.

PMID:
22158205
28.

The length of adaptive walks is insensitive to starting fitness in Aspergillus nidulans.

Gifford DR, Schoustra SE, Kassen R.

Evolution. 2011 Nov;65(11):3070-8. doi: 10.1111/j.1558-5646.2011.01380.x. Epub 2011 Jul 6.

PMID:
22023575
29.

Adaptive landscapes in evolving populations of Pseudomonas fluorescens.

Melnyk AH, Kassen R.

Evolution. 2011 Nov;65(11):3048-59. doi: 10.1111/j.1558-5646.2011.01333.x. Epub 2011 May 23.

PMID:
22023573
30.

Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens.

Bataillon T, Zhang T, Kassen R.

Genetics. 2011 Nov;189(3):939-49. doi: 10.1534/genetics.111.130468. Epub 2011 Aug 25.

31.

Parallel evolution and local differentiation in quinolone resistance in Pseudomonas aeruginosa.

Wong A, Kassen R.

Microbiology. 2011 Apr;157(Pt 4):937-44. doi: 10.1099/mic.0.046870-0. Epub 2011 Feb 3. Review.

PMID:
21292748
32.

Fitness-associated sexual reproduction in a filamentous fungus.

Schoustra S, Rundle HD, Dali R, Kassen R.

Curr Biol. 2010 Aug 10;20(15):1350-5. doi: 10.1016/j.cub.2010.05.060. Epub 2010 Jul 1.

33.

Overshooting dynamics in a model adaptive radiation.

Meyer JR, Schoustra SE, Lachapelle J, Kassen R.

Proc Biol Sci. 2011 Feb 7;278(1704):392-8. doi: 10.1098/rspb.2010.0640. Epub 2010 Jun 16.

34.

The properties of adaptive walks in evolving populations of fungus.

Schoustra SE, Bataillon T, Gifford DR, Kassen R.

PLoS Biol. 2009 Nov;7(11):e1000250. doi: 10.1371/journal.pbio.1000250. Epub 2009 Nov 24.

35.

Toward a general theory of adaptive radiation: insights from microbial experimental evolution.

Kassen R.

Ann N Y Acad Sci. 2009 Jun;1168:3-22. doi: 10.1111/j.1749-6632.2009.04574.x. Review.

PMID:
19566701
36.

Evolutionary stable investment in products that confer both an individual benefit and a public good.

Sherratt TN, Roberts G, Kassen R.

Front Biosci (Landmark Ed). 2009 Jan 1;14:4557-64. Review.

PMID:
19273370
37.

Cancer research meets evolutionary biology.

Pepper JW, Scott Findlay C, Kassen R, Spencer SL, Maley CC.

Evol Appl. 2009 Feb;2(1):62-70. doi: 10.1111/j.1752-4571.2008.00063.x.

38.

Evolution of a single niche specialist in variable environments.

Jasmin JN, Kassen R.

Proc Biol Sci. 2007 Nov 7;274(1626):2761-7.

39.

The effects of competition and predation on diversification in a model adaptive radiation.

Meyer JR, Kassen R.

Nature. 2007 Mar 22;446(7134):432-5.

PMID:
17377581
40.
41.

Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity.

Bantinaki E, Kassen R, Knight CG, Robinson Z, Spiers AJ, Rainey PB.

Genetics. 2007 May;176(1):441-53. Epub 2007 Mar 4.

42.

Big questions, small worlds: microbial model systems in ecology.

Jessup CM, Kassen R, Forde SE, Kerr B, Buckling A, Rainey PB, Bohannan BJ.

Trends Ecol Evol. 2004 Apr;19(4):189-97.

PMID:
16701253
43.

Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria.

Kassen R, Bataillon T.

Nat Genet. 2006 Apr;38(4):484-8. Epub 2006 Mar 19.

PMID:
16550173
44.

Ecological constraints on diversification in a model adaptive radiation.

Kassen R, Llewellyn M, Rainey PB.

Nature. 2004 Oct 21;431(7011):984-8. Erratum in: Nature. 2005 May 26;435(7041):528.

PMID:
15496923
45.

The ecology and genetics of microbial diversity.

Kassen R, Rainey PB.

Annu Rev Microbiol. 2004;58:207-31. Review.

PMID:
15487936
46.

Global analysis of predicted proteomes: functional adaptation of physical properties.

Knight CG, Kassen R, Hebestreit H, Rainey PB.

Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8390-5. Epub 2004 May 18.

47.

Disturbance and diversity in experimental microcosms.

Buckling A, Kassen R, Bell G, Rainey PB.

Nature. 2000 Dec 21-28;408(6815):961-4.

PMID:
11140680
48.

Diversity peaks at intermediate productivity in a laboratory microcosm.

Kassen R, Buckling A, Bell G, Rainey PB.

Nature. 2000 Aug 3;406(6795):508-12.

PMID:
10952310
50.

The emergence and maintenance of diversity: insights from experimental bacterial populations.

Rainey PB, Buckling A, Kassen R, Travisano M.

Trends Ecol Evol. 2000 Jun;15(6):243-247.

PMID:
10802550

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