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Items: 37

1.

Preparation of Multiplexed Small RNA Libraries From Plants.

Gilbert KB, Fahlgren N, Kasschau KD, Chapman EJ, Carrington JC, Carbonell A.

Bio Protoc. 2014 Nov 5;4(21). pii: e1275.

2.

Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs.

Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC.

PLoS One. 2013 Oct 21;8(10):e77181. doi: 10.1371/journal.pone.0077181. eCollection 2013.

3.

Virus-derived gene expression and RNA interference vector for grapevine.

Kurth EG, Peremyslov VV, Prokhnevsky AI, Kasschau KD, Miller M, Carrington JC, Dolja VV.

J Virol. 2012 Jun;86(11):6002-9. doi: 10.1128/JVI.00436-12. Epub 2012 Mar 21.

4.

Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO.

Wei T, Zhang C, Hong J, Xiong R, Kasschau KD, Zhou X, Carrington JC, Wang A.

PLoS Pathog. 2010 Jun 24;6(6):e1000962. doi: 10.1371/journal.ppat.1000962.

5.

MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC.

Plant Cell. 2010 Apr;22(4):1074-89. doi: 10.1105/tpc.110.073999. Epub 2010 Apr 20.

6.

Genome-wide profiling of populus small RNAs.

Klevebring D, Street NR, Fahlgren N, Kasschau KD, Carrington JC, Lundeberg J, Jansson S.

BMC Genomics. 2009 Dec 20;10:620. doi: 10.1186/1471-2164-10-620.

7.

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.

Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ.

Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17835-40. doi: 10.1073/pnas.0907003106. Epub 2009 Oct 5.

8.

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Gu W, Shirayama M, Conte D Jr, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, Yates JR 3rd, Mitani S, Carrington JC, Mello CC.

Mol Cell. 2009 Oct 23;36(2):231-44. doi: 10.1016/j.molcel.2009.09.020. Epub 2009 Oct 1.

9.

Computational and analytical framework for small RNA profiling by high-throughput sequencing.

Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC.

RNA. 2009 May;15(5):992-1002. doi: 10.1261/rna.1473809. Epub 2009 Mar 23.

10.

Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins.

Preuss SB, Costa-Nunes P, Tucker S, Pontes O, Lawrence RJ, Mosher R, Kasschau KD, Carrington JC, Baulcombe DC, Viegas W, Pikaard CS.

Mol Cell. 2008 Dec 5;32(5):673-84. doi: 10.1016/j.molcel.2008.11.009.

11.

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D Jr, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC.

Mol Cell. 2008 Jul 11;31(1):67-78. doi: 10.1016/j.molcel.2008.06.002. Epub 2008 Jun 19.

12.

Update of ASRP: the Arabidopsis Small RNA Project database.

Backman TW, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D982-5. Epub 2007 Nov 13.

13.

Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages.

Liu PP, Montgomery TA, Fahlgren N, Kasschau KD, Nonogaki H, Carrington JC.

Plant J. 2007 Oct;52(1):133-46. Epub 2007 Aug 2.

14.

Distinct expression patterns of natural antisense transcripts in Arabidopsis.

Henz SR, Cumbie JS, Kasschau KD, Lohmann JU, Carrington JC, Weigel D, Schmid M.

Plant Physiol. 2007 Jul;144(3):1247-55. Epub 2007 May 11.

15.

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.

Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC.

Plant Cell. 2007 Mar;19(3):926-42. Epub 2007 Mar 30.

16.

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes.

Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC.

PLoS One. 2007 Feb 14;2(2):e219.

17.

Genome-wide profiling and analysis of Arabidopsis siRNAs.

Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC.

PLoS Biol. 2007 Mar;5(3):e57.

18.

Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense.

Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O.

Science. 2006 Jul 7;313(5783):68-71. Epub 2006 Jun 1. Erratum in: Science. 2016 Jan 22;351(6271). pii: aaf2336. doi: 10.1126/science.aaf2336.

19.

ASRP: the Arabidopsis Small RNA Project Database.

Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D637-40.

20.

Role of transposable elements in heterochromatin and epigenetic control.

Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R.

Nature. 2004 Jul 22;430(6998):471-6.

PMID:
15269773
21.

Genetic and functional diversification of small RNA pathways in plants.

Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC.

PLoS Biol. 2004 May;2(5):E104. Epub 2004 Feb 24.

22.

Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation.

Xie Z, Kasschau KD, Carrington JC.

Curr Biol. 2003 Apr 29;13(9):784-9.

23.

Suppressor of RNA silencing encoded by Beet yellows virus.

Reed JC, Kasschau KD, Prokhnevsky AI, Gopinath K, Pogue GP, Carrington JC, Dolja VV.

Virology. 2003 Feb 15;306(2):203-9.

24.

P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction.

Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA, Carrington JC.

Dev Cell. 2003 Feb;4(2):205-17.

25.

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA.

Llave C, Xie Z, Kasschau KD, Carrington JC.

Science. 2002 Sep 20;297(5589):2053-6.

26.

Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection.

Lellis AD, Kasschau KD, Whitham SA, Carrington JC.

Curr Biol. 2002 Jun 25;12(12):1046-51.

27.

Endogenous and silencing-associated small RNAs in plants.

Llave C, Kasschau KD, Rector MA, Carrington JC.

Plant Cell. 2002 Jul;14(7):1605-19.

28.

Host-specific involvement of the HC protein in the long-distance movement of potyviruses.

Sáenz P, Salvador B, Simón-Mateo C, Kasschau KD, Carrington JC, García JA.

J Virol. 2002 Feb;76(4):1922-31.

30.

Activation and suppression of RNA silencing by plant viruses.

Carrington JC, Kasschau KD, Johansen LK.

Virology. 2001 Mar 1;281(1):1-5. Review. No abstract available.

31.

Virus-encoded suppressor of posttranscriptional gene silencing targets a maintenance step in the silencing pathway.

Llave C, Kasschau KD, Carrington JC.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13401-6.

32.
33.

Complementation of null CF mice with a human CFTR YAC transgene.

Manson AL, Trezise AE, MacVinish LJ, Kasschau KD, Birchall N, Episkopou V, Vassaux G, Evans MJ, Colledge WH, Cuthbert AW, Huxley C.

EMBO J. 1997 Jul 16;16(14):4238-49.

35.

Cell-to-Cell and Long-Distance Transport of Viruses in Plants.

Carrington JC, Kasschau KD, Mahajan SK, Schaad MC.

Plant Cell. 1996 Oct;8(10):1669-1681. No abstract available.

36.

Requirement for HC-Pro processing during genome amplification of tobacco etch potyvirus.

Kasschau KD, Carrington JC.

Virology. 1995 May 10;209(1):268-73.

37.

Translational enhancement of H-ferritin mRNA by interleukin-1 beta acts through 5' leader sequences distinct from the iron responsive element.

Rogers JT, Andriotakis JL, Lacroix L, Durmowicz GP, Kasschau KD, Bridges KR.

Nucleic Acids Res. 1994 Jul 11;22(13):2678-86.

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