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Items: 20

1.

A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine.

Kasimova MA, Yazici AT, Yudin Y, Granata D, Klein ML, Rohacs T, Carnevale V.

J Gen Physiol. 2018 Nov 5;150(11):1554-1566. doi: 10.1085/jgp.201812124. Epub 2018 Oct 17.

PMID:
30333107
2.

Structural insights on TRPV5 gating by endogenous modulators.

Hughes TET, Pumroy RA, Yazici AT, Kasimova MA, Fluck EC, Huynh KW, Samanta A, Molugu SK, Zhou ZH, Carnevale V, Rohacs T, Moiseenkova-Bell VY.

Nat Commun. 2018 Oct 10;9(1):4198. doi: 10.1038/s41467-018-06753-6.

3.

The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study.

Rems L, Viano M, Kasimova MA, Miklavčič D, Tarek M.

Bioelectrochemistry. 2018 Aug 4;125:46-57. doi: 10.1016/j.bioelechem.2018.07.018. [Epub ahead of print]

PMID:
30265863
4.

A Structural Basis for 129 Xe Hyper-CEST Signal in TEM-1 β-Lactamase.

Roose BW, Zemerov SD, Wang Y, Kasimova MA, Carnevale V, Dmochowski IJ.

Chemphyschem. 2018 Aug 27. doi: 10.1002/cphc.201800624. [Epub ahead of print]

PMID:
30151973
5.

Determining the molecular basis of voltage sensitivity in membrane proteins.

Kasimova MA, Lindahl E, Delemotte L.

J Gen Physiol. 2018 Oct 1;150(10):1444-1458. doi: 10.1085/jgp.201812086. Epub 2018 Aug 27.

PMID:
30150239
6.

Exploring the Viral Channel KcvPBCV-1 Function via Computation.

Andersson AEV, Kasimova MA, Delemotte L.

J Membr Biol. 2018 Jun;251(3):419-430. doi: 10.1007/s00232-018-0022-2. Epub 2018 Feb 23.

7.

Ion Channel Sensing: Are Fluctuations the Crux of the Matter?

Kasimova MA, Yazici A, Yudin Y, Granata D, Klein ML, Rohacs T, Carnevale V.

J Phys Chem Lett. 2018 Mar 15;9(6):1260-1264. doi: 10.1021/acs.jpclett.7b03396. Epub 2018 Feb 27.

PMID:
29439562
8.

Conformational dynamics in TRPV1 channels reported by an encoded coumarin amino acid.

Steinberg X, Kasimova MA, Cabezas-Bratesco D, Galpin JD, Ladron-de-Guevara E, Villa F, Carnevale V, Islas L, Ahern CA, Brauchi SE.

Elife. 2017 Dec 5;6. pii: e28626. doi: 10.7554/eLife.28626.

9.

Studying Kv Channels Function using Computational Methods.

Deyawe A, Kasimova MA, Delemotte L, Loussouarn G, Tarek M.

Methods Mol Biol. 2018;1684:321-341. doi: 10.1007/978-1-4939-7362-0_24.

PMID:
29058202
10.

Voltage-Gated Sodium Channels: Evolutionary History and Distinctive Sequence Features.

Kasimova MA, Granata D, Carnevale V.

Curr Top Membr. 2016;78:261-86. doi: 10.1016/bs.ctm.2016.05.002. Epub 2016 Jun 27. Review.

PMID:
27586287
11.

A molecular determinant of phosphoinositide affinity in mammalian TRPV channels.

Velisetty P, Borbiro I, Kasimova MA, Liu L, Badheka D, Carnevale V, Rohacs T.

Sci Rep. 2016 Jun 13;6:27652. doi: 10.1038/srep27652.

12.

Properties of lipid electropores I: Molecular dynamics simulations of stabilized pores by constant charge imbalance.

Casciola M, Kasimova MA, Rems L, Zullino S, Apollonio F, Tarek M.

Bioelectrochemistry. 2016 Jun;109:108-16. doi: 10.1016/j.bioelechem.2016.01.006. Epub 2016 Jan 29.

PMID:
26883056
13.

Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory.

Cournia Z, Allen TW, Andricioaei I, Antonny B, Baum D, Brannigan G, Buchete NV, Deckman JT, Delemotte L, Del Val C, Friedman R, Gkeka P, Hege HC, Hénin J, Kasimova MA, Kolocouris A, Klein ML, Khalid S, Lemieux MJ, Lindow N, Roy M, Selent J, Tarek M, Tofoleanu F, Vanni S, Urban S, Wales DJ, Smith JC, Bondar AN.

J Membr Biol. 2015 Aug;248(4):611-40. doi: 10.1007/s00232-015-9802-0. Epub 2015 Jun 11. Review.

14.

PIP₂-dependent coupling is prominent in Kv7.1 due to weakened interactions between S4-S5 and S6.

Kasimova MA, Zaydman MA, Cui J, Tarek M.

Sci Rep. 2015 Jan 6;5:7474. doi: 10.1038/srep07474.

15.

Domain-domain interactions determine the gating, permeation, pharmacology, and subunit modulation of the IKs ion channel.

Zaydman MA, Kasimova MA, McFarland K, Beller Z, Hou P, Kinser HE, Liang H, Zhang G, Shi J, Tarek M, Cui J.

Elife. 2014 Dec 23;3:e03606. doi: 10.7554/eLife.03606.

16.

Free-energy landscape of ion-channel voltage-sensor-domain activation.

Delemotte L, Kasimova MA, Klein ML, Tarek M, Carnevale V.

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):124-9. doi: 10.1073/pnas.1416959112. Epub 2014 Dec 22.

17.

Functional interaction between S1 and S4 segments in voltage-gated sodium channels revealed by human channelopathies.

Amarouch MY, Kasimova MA, Tarek M, Abriel H.

Channels (Austin). 2014;8(5):414-20. doi: 10.4161/19336950.2014.958922.

18.

Domain structure and conformational changes in rat KV2.1 ion channel.

Grizel A, Popinako A, Kasimova MA, Stevens L, Karlova M, Moisenovich MM, Sokolova OS.

J Neuroimmune Pharmacol. 2014 Dec;9(5):727-39. doi: 10.1007/s11481-014-9565-x. Epub 2014 Sep 26.

PMID:
25256718
19.

Voltage-gated ion channel modulation by lipids: insights from molecular dynamics simulations.

Kasimova MA, Tarek M, Shaytan AK, Shaitan KV, Delemotte L.

Biochim Biophys Acta. 2014 May;1838(5):1322-31. doi: 10.1016/j.bbamem.2014.01.024. Epub 2014 Feb 8.

20.

Dual effect of phosphatidylinositol (4,5)-bisphosphate PIP(2) on Shaker K(+) [corrected] channels.

Abderemane-Ali F, Es-Salah-Lamoureux Z, Delemotte L, Kasimova MA, Labro AJ, Snyders DJ, Fedida D, Tarek M, Baró I, Loussouarn G.

J Biol Chem. 2012 Oct 19;287(43):36158-67. doi: 10.1074/jbc.M112.382085. Epub 2012 Aug 29. Erratum in: J Biol Chem. 2013 Apr 12;288(15):10951.

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