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Items: 1 to 50 of 149

1.

Ubiquitous abundance distribution of non-dominant plankton across the global ocean.

Ser-Giacomi E, Zinger L, Malviya S, De Vargas C, Karsenti E, Bowler C, De Monte S.

Nat Ecol Evol. 2018 Aug;2(8):1243-1249. doi: 10.1038/s41559-018-0587-2. Epub 2018 Jun 18.

PMID:
29915345
2.

A global ocean atlas of eukaryotic genes.

Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P.

Nat Commun. 2018 Jan 25;9(1):373. doi: 10.1038/s41467-017-02342-1.

3.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3.

4.

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes.

Colin S, Coelho LP, Sunagawa S, Bowler C, Karsenti E, Bork P, Pepperkok R, de Vargas C.

Elife. 2017 Oct 31;6. pii: e26066. doi: 10.7554/eLife.26066.

5.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M; Genoscope Technical Team, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernández-Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL; Tara Oceans Consortium Coordinators, Pesant S, Karsenti E, Wincker P.

Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.

6.

A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.

Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P, Barbe V.

Mol Ecol Resour. 2017 Sep;17(5):1054-1071. doi: 10.1111/1755-0998.12640. Epub 2017 Jan 23.

PMID:
27889948
7.

CDK1 Prevents Unscheduled PLK4-STIL Complex Assembly in Centriole Biogenesis.

Zitouni S, Francia ME, Leal F, Montenegro Gouveia S, Nabais C, Duarte P, Gilberto S, Brito D, Moyer T, Kandels-Lewis S, Ohta M, Kitagawa D, Holland AJ, Karsenti E, Lorca T, Lince-Faria M, Bettencourt-Dias M.

Curr Biol. 2016 May 9;26(9):1127-37. doi: 10.1016/j.cub.2016.03.055. Epub 2016 Apr 21.

8.

Plankton networks driving carbon export in the oligotrophic ocean.

Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JCI, Malviya S, Sunagawa S, Dimier C, Kandels-Lewis S, Picheral M, Poulain J, Searson S; Tara Oceans coordinators, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp-Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, de Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G.

Nature. 2016 Apr 28;532(7600):465-470. doi: 10.1038/nature16942. Epub 2016 Feb 10.

9.

Open science resources for the discovery and analysis of Tara Oceans data.

Pesant S, Not F, Picheral M, Kandels-Lewis S, Le Bescot N, Gorsky G, Iudicone D, Karsenti E, Speich S, Troublé R, Dimier C, Searson S; Tara Oceans Consortium Coordinators.

Sci Data. 2015 May 26;2:150023. doi: 10.1038/sdata.2015.23. eCollection 2015.

10.

Ocean plankton. Determinants of community structure in the global plankton interactome.

Lima-Mendez G, Faust K, Henry N, Decelle J, Colin S, Carcillo F, Chaffron S, Ignacio-Espinosa JC, Roux S, Vincent F, Bittner L, Darzi Y, Wang J, Audic S, Berline L, Bontempi G, Cabello AM, Coppola L, Cornejo-Castillo FM, d'Ovidio F, De Meester L, Ferrera I, Garet-Delmas MJ, Guidi L, Lara E, Pesant S, Royo-Llonch M, Salazar G, Sánchez P, Sebastian M, Souffreau C, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Gorsky G, Not F, Ogata H, Speich S, Stemmann L, Weissenbach J, Wincker P, Acinas SG, Sunagawa S, Bork P, Sullivan MB, Karsenti E, Bowler C, de Vargas C, Raes J.

Science. 2015 May 22;348(6237):1262073. doi: 10.1126/science.1262073.

11.

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima-Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E.

Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.

12.

Ocean plankton. Patterns and ecological drivers of ocean viral communities.

Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB.

Science. 2015 May 22;348(6237):1261498. doi: 10.1126/science.1261498. Erratum in: Science. 2016 Aug 12;353(6300). pii: aah6502. doi: 10.1126/science.aah6502.

13.

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.

Villar E, Farrant GK, Follows M, Garczarek L, Speich S, Audic S, Bittner L, Blanke B, Brum JR, Brunet C, Casotti R, Chase A, Dolan JR, d'Ortenzio F, Gattuso JP, Grima N, Guidi L, Hill CN, Jahn O, Jamet JL, Le Goff H, Lepoivre C, Malviya S, Pelletier E, Romagnan JB, Roux S, Santini S, Scalco E, Schwenck SM, Tanaka A, Testor P, Vannier T, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Boss E, de Vargas C, Gorsky G, Ogata H, Pesant S, Sullivan MB, Sunagawa S, Wincker P, Karsenti E, Bowler C, Not F, Hingamp P, Iudicone D.

Science. 2015 May 22;348(6237):1261447. doi: 10.1126/science.1261447.

14.

Ocean plankton. Structure and function of the global ocean microbiome.

Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P.

Science. 2015 May 22;348(6237):1261359. doi: 10.1126/science.1261359.

15.

Tara Oceans. Tara Oceans studies plankton at planetary scale. Introduction.

Bork P, Bowler C, de Vargas C, Gorsky G, Karsenti E, Wincker P.

Science. 2015 May 22;348(6237):873. doi: 10.1126/science.aac5605. Epub 2015 May 21. No abstract available.

PMID:
25999501
16.

The making of Tara Oceans: funding blue skies research for our Blue Planet.

Karsenti E.

Mol Syst Biol. 2015 May 21;11(5):811. doi: 10.15252/msb.20156271. No abstract available.

17.

Computational eco-systems biology in Tara Oceans: translating data into knowledge.

Sunagawa S, Karsenti E, Bowler C, Bork P.

Mol Syst Biol. 2015 May 21;11(5):809. doi: 10.15252/msb.20156272. No abstract available.

18.

Collective behavior of minus-ended motors in mitotic microtubule asters gliding toward DNA.

Athale CA, Dinarina A, Nedelec F, Karsenti E.

Phys Biol. 2014 Feb;11(1):016008. doi: 10.1088/1478-3975/11/1/016008. Epub 2014 Jan 29.

PMID:
24476749
19.

MURF2B, a novel LC3-binding protein, participates with MURF2A in the switch between autophagy and ubiquitin proteasome system during differentiation of C2C12 muscle cells.

Pizon V, Rybina S, Gerbal F, Delort F, Vicart P, Baldacci G, Karsenti E.

PLoS One. 2013 Oct 4;8(10):e76140. doi: 10.1371/journal.pone.0076140. eCollection 2013.

20.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2014 Sep;16(9):2659-71. doi: 10.1111/1462-2920.12250. Epub 2013 Sep 18.

PMID:
24102695
21.

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.

Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H.

ISME J. 2013 Sep;7(9):1678-95. doi: 10.1038/ismej.2013.59. Epub 2013 Apr 11.

22.

A journey from reductionist to systemic cell biology aboard the schooner Tara.

Karsenti E.

Mol Biol Cell. 2012 Jul;23(13):2403-6. doi: 10.1091/mbc.E11-06-0571.

23.

Towards an 'oceans systems biology'.

Karsenti E.

Mol Syst Biol. 2012 Mar 27;8:575. doi: 10.1038/msb.2012.8. No abstract available.

24.

A holistic approach to marine eco-systems biology.

Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P; Tara Oceans Consortium.

PLoS Biol. 2011 Oct;9(10):e1001177. doi: 10.1371/journal.pbio.1001177. Epub 2011 Oct 18.

25.

ISWI is a RanGTP-dependent MAP required for chromosome segregation.

Yokoyama H, Rybina S, Santarella-Mellwig R, Mattaj IW, Karsenti E.

J Cell Biol. 2009 Dec 14;187(6):813-29. doi: 10.1083/jcb.200906020.

26.

Chromatin shapes the mitotic spindle.

Dinarina A, Pugieux C, Corral MM, Loose M, Spatz J, Karsenti E, Nédélec F.

Cell. 2009 Aug 7;138(3):502-13. doi: 10.1016/j.cell.2009.05.027.

27.

XMAP215-EB1 interaction is required for proper spindle assembly and chromosome segregation in Xenopus egg extract.

Kronja I, Kruljac-Letunic A, Caudron-Herger M, Bieling P, Karsenti E.

Mol Biol Cell. 2009 Jun;20(11):2684-96. doi: 10.1091/mbc.E08-10-1051. Epub 2009 Apr 15.

28.

Tubulin dimers oligomerize before their incorporation into microtubules.

Mozziconacci J, Sandblad L, Wachsmuth M, Brunner D, Karsenti E.

PLoS One. 2008;3(11):e3821. doi: 10.1371/journal.pone.0003821. Epub 2008 Nov 27.

29.

Regulation of microtubule dynamics by reaction cascades around chromosomes.

Athale CA, Dinarina A, Mora-Coral M, Pugieux C, Nedelec F, Karsenti E.

Science. 2008 Nov 21;322(5905):1243-7. doi: 10.1126/science.1161820. Epub 2008 Oct 23.

30.

Hepatoma up-regulated protein is required for chromatin-induced microtubule assembly independently of TPX2.

Casanova CM, Rybina S, Yokoyama H, Karsenti E, Mattaj IW.

Mol Biol Cell. 2008 Nov;19(11):4900-8. doi: 10.1091/mbc.E08-06-0624. Epub 2008 Sep 17.

31.

Cdk11 is a RanGTP-dependent microtubule stabilization factor that regulates spindle assembly rate.

Yokoyama H, Gruss OJ, Rybina S, Caudron M, Schelder M, Wilm M, Mattaj IW, Karsenti E.

J Cell Biol. 2008 Mar 10;180(5):867-75. doi: 10.1083/jcb.200706189. Epub 2008 Mar 3.

32.

Self-organization in cell biology: a brief history.

Karsenti E.

Nat Rev Mol Cell Biol. 2008 Mar;9(3):255-62. doi: 10.1038/nrm2357. Review.

PMID:
18292780
33.

Discrete states of a protein interaction network govern interphase and mitotic microtubule dynamics.

Niethammer P, Kronja I, Kandels-Lewis S, Rybina S, Bastiaens P, Karsenti E.

PLoS Biol. 2007 Feb;5(2):e29.

34.

Modelling microtubule patterns.

Karsenti E, Nédélec F, Surrey T.

Nat Cell Biol. 2006 Nov;8(11):1204-11. Review.

PMID:
17060901
35.

Detection and quantification of protein-microtubules interactions using green fluorescent protein photoconversion.

Brunet S, Zimmermann T, Reynaud EG, Vernos I, Karsenti E, Pepperkok R.

Traffic. 2006 Sep;7(9):1283-9.

PMID:
17004326
36.

Gradients in the self-organization of the mitotic spindle.

Bastiaens P, Caudron M, Niethammer P, Karsenti E.

Trends Cell Biol. 2006 Mar;16(3):125-34. Epub 2006 Feb 14.

PMID:
16478663
37.

Microtubule-dependent transport and organization of sarcomeric myosin during skeletal muscle differentiation.

Pizon V, Gerbal F, Diaz CC, Karsenti E.

EMBO J. 2005 Nov 2;24(21):3781-92. Epub 2005 Oct 20.

38.

Spatial coordination of spindle assembly by chromosome-mediated signaling gradients.

Caudron M, Bunt G, Bastiaens P, Karsenti E.

Science. 2005 Aug 26;309(5739):1373-6.

39.

TPX or not TPX?

Karsenti E.

Mol Cell. 2005 Aug 19;19(4):431-2. Review.

40.

Cytoskeleton: spindle saga.

Karsenti E.

Nature. 2004 Dec 2;432(7017):563-4. No abstract available.

PMID:
15577894
41.

Eg5 causes elongation of meiotic spindles when flux-associated microtubule depolymerization is blocked.

Shirasu-Hiza M, Perlman ZE, Wittmann T, Karsenti E, Mitchison TJ.

Curr Biol. 2004 Nov 9;14(21):1941-5.

42.

Characterization of the TPX2 domains involved in microtubule nucleation and spindle assembly in Xenopus egg extracts.

Brunet S, Sardon T, Zimmerman T, Wittmann T, Pepperkok R, Karsenti E, Vernos I.

Mol Biol Cell. 2004 Dec;15(12):5318-28. Epub 2004 Sep 22.

43.

Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome.

Liska AJ, Popov AV, Sunyaev S, Coughlin P, Habermann B, Shevchenko A, Bork P, Karsenti E, Shevchenko A.

Proteomics. 2004 Sep;4(9):2707-21.

PMID:
15352245
44.

The mitotic spindle and actin tails.

Karsenti E, Nédélec F.

Biol Cell. 2004 Apr;96(3):237-40. Review.

PMID:
15182706
45.

Stathmin-tubulin interaction gradients in motile and mitotic cells.

Niethammer P, Bastiaens P, Karsenti E.

Science. 2004 Mar 19;303(5665):1862-6.

46.

Stu2p and XMAP215: turncoat microtubule-associated proteins?

Popov AV, Karsenti E.

Trends Cell Biol. 2003 Nov;13(11):547-50.

PMID:
14573345
47.

Long-range communication between chromatin and microtubules in Xenopus egg extracts.

Carazo-Salas RE, Karsenti E.

Curr Biol. 2003 Sep 30;13(19):1728-33.

48.

Importin alpha-regulated nucleation of microtubules by TPX2.

Schatz CA, Santarella R, Hoenger A, Karsenti E, Mattaj IW, Gruss OJ, Carazo-Salas RE.

EMBO J. 2003 May 1;22(9):2060-70.

49.

Self-organisation and forces in the microtubule cytoskeleton.

Nédélec F, Surrey T, Karsenti E.

Curr Opin Cell Biol. 2003 Feb;15(1):118-24. Review.

PMID:
12517713
50.

Transient association of titin and myosin with microtubules in nascent myofibrils directed by the MURF2 RING-finger protein.

Pizon V, Iakovenko A, Van Der Ven PF, Kelly R, Fatu C, Fürst DO, Karsenti E, Gautel M.

J Cell Sci. 2002 Dec 1;115(Pt 23):4469-82.

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