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Items: 1 to 50 of 179

1.

Variables associated with subjective cognitive change among Iraq and Afghanistan war Veterans with blast-related mild traumatic brain injury.

Karr JE, Rau HK, Shofer JB, Hendrickson RC, Peskind ER, Pagulayan KF.

J Clin Exp Neuropsychol. 2019 Sep;41(7):680-693. doi: 10.1080/13803395.2019.1611740. Epub 2019 May 20.

PMID:
31106695
2.

Comparing Composite Scores for the ANAM4 TBI-MIL for Research in Mild Traumatic Brain Injury.

Iverson GL, Ivins BJ, Karr JE, Crane PK, Lange RT, Cole WR, Silverberg ND.

Arch Clin Neuropsychol. 2019 May 7. pii: acz021. doi: 10.1093/arclin/acz021. [Epub ahead of print]

PMID:
31063188
3.

Clinical experience using a dehydrated amnion/chorion membrane construct for the management of wounds.

Caporusso J, Abdo R, Karr J, Smith M, Anaim A.

Wounds. 2019 Apr;31(4 Suppl):S19-S27.

4.

Multivariate base rates for the assessment of executive functioning among children and adolescents.

Cook NE, Karr JE, Brooks BL, Garcia-Barrera MA, Holdnack JA, Iverson GL.

Child Neuropsychol. 2019 Aug;25(6):836-858. doi: 10.1080/09297049.2018.1543389. Epub 2018 Dec 11.

PMID:
30537889
5.

The unity and diversity of executive functions: A systematic review and re-analysis of latent variable studies.

Karr JE, Areshenkoff CN, Rast P, Hofer SM, Iverson GL, Garcia-Barrera MA.

Psychol Bull. 2018 Nov;144(11):1147-1185. doi: 10.1037/bul0000160. Epub 2018 Aug 6.

PMID:
30080055
6.
7.

A blueprint for human whole-cell modeling.

Szigeti B, Roth YD, Sekar JAP, Goldberg AP, Pochiraju SC, Karr JR.

Curr Opin Syst Biol. 2018 Feb;7:8-15. doi: 10.1016/j.coisb.2017.10.005. Epub 2017 Nov 9.

8.

Examining the Latent Structure of the Delis-Kaplan Executive Function System.

Karr JE, Hofer SM, Iverson GL, Garcia-Barrera MA.

Arch Clin Neuropsychol. 2019 May 1;34(3):381-394. doi: 10.1093/arclin/acy043.

PMID:
29733343
10.

Sensitivity and Specificity of an Executive Function Screener at Identifying Children With ADHD and Reading Disability.

Karr JE, Kibby MY, Jagger-Rickels AC, Garcia-Barrera MA.

J Atten Disord. 2018 Mar 1:1087054718763878. doi: 10.1177/1087054718763878. [Epub ahead of print]

PMID:
29562850
11.

Emerging whole-cell modeling principles and methods.

Goldberg AP, Szigeti B, Chew YH, Sekar JA, Roth YD, Karr JR.

Curr Opin Biotechnol. 2018 Jun;51:97-102. doi: 10.1016/j.copbio.2017.12.013. Epub 2017 Dec 21. Review.

12.
13.

Perceived Injustice and Its Correlates after Mild Traumatic Brain Injury.

Iverson GL, Terry DP, Karr JE, Panenka WJ, Silverberg ND.

J Neurotrauma. 2018 May 15;35(10):1156-1166. doi: 10.1089/neu.2017.5402. Epub 2018 Mar 1.

PMID:
29239280
14.

Fundamental Transitions and Ionization Energies of the Hydrogen Molecular Ions with Few ppt Uncertainty.

Korobov VI, Hilico L, Karr JP.

Phys Rev Lett. 2017 Jun 9;118(23):233001. doi: 10.1103/PhysRevLett.118.233001. Epub 2017 Jun 8.

PMID:
28644635
15.

Advanced clinical interpretation of the Delis-Kaplan Executive Function System: multivariate base rates of low scores.

Karr JE, Garcia-Barrera MA, Holdnack JA, Iverson GL.

Clin Neuropsychol. 2018 Jan;32(1):42-53. doi: 10.1080/13854046.2017.1334828. Epub 2017 Jun 1.

PMID:
28571515
16.

Using Multivariate Base Rates to Interpret Low Scores on an Abbreviated Battery of the Delis-Kaplan Executive Function System.

Karr JE, Garcia-Barrera MA, Holdnack JA, Iverson GL.

Arch Clin Neuropsychol. 2017 May 1;32(3):297-305. doi: 10.1093/arclin/acw105.

PMID:
28431030
17.

Non-Pharmacologic Interventions for Older Adults with Subjective Cognitive Decline: Systematic Review, Meta-Analysis, and Preliminary Recommendations.

Smart CM, Karr JE, Areshenkoff CN, Rabin LA, Hudon C, Gates N, Ali JI, Arenaza-Urquijo EM, Buckley RF, Chetelat G, Hampel H, Jessen F, Marchant NL, Sikkes SAM, Tales A, van der Flier WM, Wesselman L; and the Subjective Cognitive Decline Initiative (SCD-I) Working Group.

Neuropsychol Rev. 2017 Sep;27(3):245-257. doi: 10.1007/s11065-017-9342-8. Epub 2017 Mar 7. Review.

PMID:
28271346
18.

The assessment of executive functions using the BASC-2.

Karr JE, Garcia-Barrera MA.

Psychol Assess. 2017 Sep;29(9):1182-1187. doi: 10.1037/pas0000418. Epub 2016 Nov 10.

PMID:
27831727
19.

Guidelines for Reproducibly Building and Simulating Systems Biology Models.

Medley JK, Goldberg AP, Karr JR.

IEEE Trans Biomed Eng. 2016 Oct;63(10):2015-20. doi: 10.1109/TBME.2016.2591960. Epub 2016 Jul 18.

20.

ATP Is an Allosteric Inhibitor of Coxsackievirus B3 Polymerase.

Karr JP, Peersen OB.

Biochemistry. 2016 Jul 19;55(28):3995-4002. doi: 10.1021/acs.biochem.6b00467. Epub 2016 Jul 6.

21.

Toward Community Standards and Software for Whole-Cell Modeling.

Waltemath D, Karr JR, Bergmann FT, Chelliah V, Hucka M, Krantz M, Liebermeister W, Mendes P, Myers CJ, Pir P, Alaybeyoglu B, Aranganathan NK, Baghalian K, Bittig AT, Burke PE, Cantarelli M, Chew YH, Costa RS, Cursons J, Czauderna T, Goldberg AP, Gomez HF, Hahn J, Hameri T, Gardiol DF, Kazakiewicz D, Kiselev I, Knight-Schrijver V, Knupfer C, Konig M, Lee D, Lloret-Villas A, Mandrik N, Medley JK, Moreau B, Naderi-Meshkin H, Palaniappan SK, Priego-Espinosa D, Scharm M, Sharma M, Smallbone K, Stanford NJ, Song JH, Theile T, Tokic M, Tomar N, Toure V, Uhlendorf J, Varusai TM, Watanabe LH, Wendland F, Wolfien M, Yurkovich JT, Zhu Y, Zardilis A, Zhukova A, Schreiber F.

IEEE Trans Biomed Eng. 2016 Oct;63(10):2007-14. doi: 10.1109/TBME.2016.2560762. Epub 2016 Jun 10.

22.

Evaluating empathy in Colombian ex-combatants: Examination of the internal structure of the Interpersonal Reactivity Index (IRI) in Spanish.

Garcia-Barrera MA, Karr JE, Trujillo-Orrego N, Trujillo-Orrego S, Pineda DA.

Psychol Assess. 2017 Jan;29(1):116-122. doi: 10.1037/pas0000331. Epub 2016 Apr 25.

PMID:
27111730
23.
24.

Circumstellar disks of the most vigorously accreting young stars.

Liu HB, Takami M, Kudo T, Hashimoto J, Dong R, Vorobyov EI, Pyo TS, Fukagawa M, Tamura M, Henning T, Dunham MM, Karr JL, Kusakabe N, Tsuribe T.

Sci Adv. 2016 Feb 5;2(2):e1500875. doi: 10.1126/sciadv.1500875. eCollection 2016 Feb.

25.

Theoretical Hyperfine Structure of the Molecular Hydrogen Ion at the 1 ppm Level.

Korobov VI, Koelemeij JC, Hilico L, Karr JP.

Phys Rev Lett. 2016 Feb 5;116(5):053003. doi: 10.1103/PhysRevLett.116.053003. Epub 2016 Feb 2.

PMID:
26894709
26.

Ancient origin of high taxonomic richness among insects.

Clapham ME, Karr JA, Nicholson DB, Ross AJ, Mayhew PJ.

Proc Biol Sci. 2016 Feb 10;283(1824). pii: 20152476. doi: 10.1098/rspb.2015.2476.

27.

Probing QED and fundamental constants through laser spectroscopy of vibrational transitions in HD(.).

Biesheuvel J, Karr JP, Hilico L, Eikema KS, Ubachs W, Koelemeij JC.

Nat Commun. 2016 Jan 27;7:10385. doi: 10.1038/ncomms10385.

28.

A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium.

Kazakiewicz D, Karr JR, Langner KM, Plewczynski D.

Comput Biol Chem. 2015 Dec;59 Pt B:91-7. doi: 10.1016/j.compbiolchem.2015.07.007. Epub 2015 Jul 30.

PMID:
26271684
29.

The principles of whole-cell modeling.

Karr JR, Takahashi K, Funahashi A.

Curr Opin Microbiol. 2015 Oct;27:18-24. doi: 10.1016/j.mib.2015.06.004. Epub 2015 Jun 24. Review.

PMID:
26115539
30.

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.

31.

NetworkPainter: dynamic intracellular pathway animation in Cytobank.

Karr JR, Guturu H, Chen EY, Blair SL, Irish JM, Kotecha N, Covert MW.

BMC Bioinformatics. 2015 May 25;16:172. doi: 10.1186/s12859-015-0602-4.

32.

Cross-cultural validation of a behavioral screener for executive functions: Guidelines for clinical use among Colombian children with and without ADHD.

Garcia-Barrera MA, Karr JE, Duran V, Direnfeld E, Pineda DA.

Psychol Assess. 2015 Dec;27(4):1349-63. doi: 10.1037/pas0000117. Epub 2015 Mar 30.

PMID:
25822832
33.
35.

Causal inference in biology networks with integrated belief propagation.

Chang R, Karr JR, Schadt EE.

Pac Symp Biocomput. 2015:359-70.

36.

DREAMTools: a Python package for scoring collaborative challenges.

Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, de la Fuente A, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, Pratap A, Prill RJ, Weirauch MT, Costello JC, Stolovitzky G, Saez-Rodriguez J.

Version 2. F1000Res. 2015 Oct 9 [revised 2016 Jan 1];4:1030. doi: 10.12688/f1000research.7118.2. eCollection 2015.

37.

Blast-related mild traumatic brain injury: a Bayesian random-effects meta-analysis on the cognitive outcomes of concussion among military personnel.

Karr JE, Areshenkoff CN, Duggan EC, Garcia-Barrera MA.

Neuropsychol Rev. 2014 Dec;24(4):428-44. doi: 10.1007/s11065-014-9271-8. Epub 2014 Sep 25. Review.

PMID:
25253505
38.

WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions.

Karr JR, Phillips NC, Covert MW.

Database (Oxford). 2014 Sep 16;2014. pii: bau095. doi: 10.1093/database/bau095. Print 2014.

39.

Neural correlates of sexual cue reactivity in individuals with and without compulsive sexual behaviours.

Voon V, Mole TB, Banca P, Porter L, Morris L, Mitchell S, Lapa TR, Karr J, Harrison NA, Potenza MN, Irvine M.

PLoS One. 2014 Jul 11;9(7):e102419. doi: 10.1371/journal.pone.0102419. eCollection 2014.

40.

An empirical comparison of the therapeutic benefits of physical exercise and cognitive training on the executive functions of older adults: a meta-analysis of controlled trials.

Karr JE, Areshenkoff CN, Rast P, Garcia-Barrera MA.

Neuropsychology. 2014 Nov;28(6):829-45. doi: 10.1037/neu0000101. Epub 2014 Jun 16.

PMID:
24933486
41.

Epidemiology and antimicrobial resistance of international travel-associated Campylobacter infections in the United States, 2005-2011.

Ricotta EE, Palmer A, Wymore K, Clogher P, Oosmanally N, Robinson T, Lathrop S, Karr J, Hatch J, Dunn J, Ryan P, Blythe D.

Am J Public Health. 2014 Jul;104(7):e108-14. doi: 10.2105/AJPH.2013.301867. Epub 2014 May 15.

42.

Reducing livestock effects on public lands in the western United States as the climate changes: a reply to Svejcar et al.

Beschta RL, Donahue DL, DellaSala DA, Rhodes JJ, Karr JR, O'Brien MH, Fleischner TL, Williams CD.

Environ Manage. 2014 Jun;53(6):1039-42. doi: 10.1007/s00267-014-0263-5. Epub 2014 Apr 1.

PMID:
24687319
43.

mα(7)-order corrections in the hydrogen molecular ions and antiprotonic helium.

Korobov VI, Hilico L, Karr JP.

Phys Rev Lett. 2014 Mar 14;112(10):103003. Epub 2014 Mar 12.

PMID:
24679287
44.

Executive functions and intraindividual variability following concussion.

Karr JE, Garcia-Barrera MA, Areshenkoff CN.

J Clin Exp Neuropsychol. 2014;36(1):15-31. doi: 10.1080/13803395.2013.863833. Epub 2013 Nov 28.

PMID:
24283964
45.

Wound healing and cost-saving benefits of combining negative-pressure wound therapy with silver.

Karr JC, de Mola FL, Pham T, Tooke L.

Adv Skin Wound Care. 2013 Dec;26(12):562-5. doi: 10.1097/01.ASW.0000434518.86905.8a.

PMID:
24253213
46.

The neuropsychological outcomes of concussion: a systematic review of meta-analyses on the cognitive sequelae of mild traumatic brain injury.

Karr JE, Areshenkoff CN, Garcia-Barrera MA.

Neuropsychology. 2014 May;28(3):321-36. doi: 10.1037/neu0000037. Epub 2013 Nov 11. Review.

PMID:
24219611
47.

Accelerated discovery via a whole-cell model.

Sanghvi JC, Regot S, Carrasco S, Karr JR, Gutschow MV, Bolival B Jr, Covert MW.

Nat Methods. 2013 Dec;10(12):1192-5. doi: 10.1038/nmeth.2724. Epub 2013 Nov 3.

48.

WholeCellViz: data visualization for whole-cell models.

Lee R, Karr JR, Covert MW.

BMC Bioinformatics. 2013 Aug 21;14:253. doi: 10.1186/1471-2105-14-253.

49.

Longitudinal applications of a behavioral screener of executive functioning: assessing factorial invariance and exploring latent growth.

Garcia-Barrera MA, Karr JE, Kamphaus RW.

Psychol Assess. 2013 Dec;25(4):1300-13. doi: 10.1037/a0034046. Epub 2013 Aug 5.

PMID:
23914956
50.

Towards a whole-cell modeling approach for synthetic biology.

Purcell O, Jain B, Karr JR, Covert MW, Lu TK.

Chaos. 2013 Jun;23(2):025112. doi: 10.1063/1.4811182.

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