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Items: 1 to 50 of 58

1.

Glucose Signaling Is Connected to Chromosome Segregation Through Protein Kinase A Phosphorylation of the Dam1 Kinetochore Subunit in Saccharomyces cerevisiae.

Shah SB, Parmiter D, Constantine C, Elizalde P, Naldrett M, Karpova TS, Choy JS.

Genetics. 2019 Feb;211(2):531-547. doi: 10.1534/genetics.118.301727. Epub 2018 Dec 13.

PMID:
30546002
2.

Single-Molecule Analysis Reveals Linked Cycles of RSC Chromatin Remodeling and Ace1p Transcription Factor Binding in Yeast.

Mehta GD, Ball DA, Eriksson PR, Chereji RV, Clark DJ, McNally JG, Karpova TS.

Mol Cell. 2018 Dec 6;72(5):875-887.e9. doi: 10.1016/j.molcel.2018.09.009. Epub 2018 Oct 11.

PMID:
30318444
3.

Single molecule analysis of lamin dynamics.

Serebryannyy LA, Ball DA, Karpova TS, Misteli T.

Methods. 2019 Mar 15;157:56-65. doi: 10.1016/j.ymeth.2018.08.009. Epub 2018 Aug 24.

PMID:
30145357
4.

Associations of Simian Immunodeficiency Virus (SIV)-Specific Follicular CD8+ T Cells with Other Follicular T Cells Suggest Complex Contributions to SIV Viremia Control.

Rahman MA, McKinnon KM, Karpova TS, Ball DA, Venzon DJ, Fan W, Kang G, Li Q, Robert-Guroff M.

J Immunol. 2018 Apr 15;200(8):2714-2726. doi: 10.4049/jimmunol.1701403. Epub 2018 Mar 5.

5.

Single-molecule analysis of steroid receptor and cofactor action in living cells.

Paakinaho V, Presman DM, Ball DA, Johnson TA, Schiltz RL, Levitt P, Mazza D, Morisaki T, Karpova TS, Hager GL.

Nat Commun. 2017 Jun 21;8:15896. doi: 10.1038/ncomms15896.

6.

Mislocalization of centromeric histone H3 variant CENP-A contributes to chromosomal instability (CIN) in human cells.

Shrestha RL, Ahn GS, Staples MI, Sathyan KM, Karpova TS, Foltz DR, Basrai MA.

Oncotarget. 2017 Jul 18;8(29):46781-46800. doi: 10.18632/oncotarget.18108.

7.

Labeling Extracellular Vesicles for Nanoscale Flow Cytometry.

Morales-Kastresana A, Telford B, Musich TA, McKinnon K, Clayborne C, Braig Z, Rosner A, Demberg T, Watson DC, Karpova TS, Freeman GJ, DeKruyff RH, Pavlakis GN, Terabe M, Robert-Guroff M, Berzofsky JA, Jones JC.

Sci Rep. 2017 May 12;7(1):1878. doi: 10.1038/s41598-017-01731-2.

8.

Transcription-dependent radial distribution of TCF7L2 regulated genes in chromosome territories.

Torabi K, Wangsa D, Ponsa I, Brown M, Bosch A, Vila-Casadesús M, Karpova TS, Calvo M, Castells A, Miró R, Ried T, Camps J.

Chromosoma. 2017 Oct;126(5):655-667. doi: 10.1007/s00412-017-0629-6. Epub 2017 Mar 25.

PMID:
28343235
9.

Quantifying transcription factor binding dynamics at the single-molecule level in live cells.

Presman DM, Ball DA, Paakinaho V, Grimm JB, Lavis LD, Karpova TS, Hager GL.

Methods. 2017 Jul 1;123:76-88. doi: 10.1016/j.ymeth.2017.03.014. Epub 2017 Mar 15.

10.

Single molecule tracking of Ace1p in Saccharomyces cerevisiae defines a characteristic residence time for non-specific interactions of transcription factors with chromatin.

Ball DA, Mehta GD, Salomon-Kent R, Mazza D, Morisaki T, Mueller F, McNally JG, Karpova TS.

Nucleic Acids Res. 2016 Dec 1;44(21):e160. Epub 2016 Aug 26.

11.

DNA binding triggers tetramerization of the glucocorticoid receptor in live cells.

Presman DM, Ganguly S, Schiltz RL, Johnson TA, Karpova TS, Hager GL.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8236-41. doi: 10.1073/pnas.1606774113. Epub 2016 Jul 5.

12.

Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions.

Swinstead EE, Miranda TB, Paakinaho V, Baek S, Goldstein I, Hawkins M, Karpova TS, Ball D, Mazza D, Lavis LD, Grimm JB, Morisaki T, Grøntved L, Presman DM, Hager GL.

Cell. 2016 Apr 21;165(3):593-605. doi: 10.1016/j.cell.2016.02.067. Epub 2016 Apr 7.

13.

Vaccine Induction of Lymph Node-Resident Simian Immunodeficiency Virus Env-Specific T Follicular Helper Cells in Rhesus Macaques.

Vargas-Inchaustegui DA, Demers A, Shaw JM, Kang G, Ball D, Tuero I, Musich T, Mohanram V, Demberg T, Karpova TS, Li Q, Robert-Guroff M.

J Immunol. 2016 Feb 15;196(4):1700-10. doi: 10.4049/jimmunol.1502137. Epub 2016 Jan 15.

14.

Stress-dependent proteolytic processing of the actin assembly protein Lsb1 modulates a yeast prion.

Ali M, Chernova TA, Newnam GP, Yin L, Shanks J, Karpova TS, Lee A, Laur O, Subramanian S, Kim D, McNally JG, Seyfried NT, Chernoff YO, Wilkinson KD.

J Biol Chem. 2014 Oct 3;289(40):27625-39. doi: 10.1074/jbc.M114.582429. Epub 2014 Aug 20.

15.

Measuring chromatin interaction dynamics on the second time scale at single-copy genes.

Poorey K, Viswanathan R, Carver MN, Karpova TS, Cirimotich SM, McNally JG, Bekiranov S, Auble DT.

Science. 2013 Oct 18;342(6156):369-72. doi: 10.1126/science.1242369. Epub 2013 Oct 3.

16.

Genome-wide haploinsufficiency screen reveals a novel role for γ-TuSC in spindle organization and genome stability.

Choy JS, O'Toole E, Schuster BM, Crisp MJ, Karpova TS, McNally JG, Winey M, Gardner MK, Basrai MA.

Mol Biol Cell. 2013 Sep;24(17):2753-63. doi: 10.1091/mbc.E12-12-0902. Epub 2013 Jul 3.

17.

Monitoring dynamic binding of chromatin proteins in vivo by fluorescence correlation spectroscopy and temporal image correlation spectroscopy.

Mazza D, Stasevich TJ, Karpova TS, McNally JG.

Methods Mol Biol. 2012;833:177-200. doi: 10.1007/978-1-61779-477-3_12.

PMID:
22183595
18.

Monitoring dynamic binding of chromatin proteins in vivo by fluorescence recovery after photobleaching.

Mueller F, Karpova TS, Mazza D, McNally JG.

Methods Mol Biol. 2012;833:153-76. doi: 10.1007/978-1-61779-477-3_11.

PMID:
22183594
19.

Prion induction by the short-lived, stress-induced protein Lsb2 is regulated by ubiquitination and association with the actin cytoskeleton.

Chernova TA, Romanyuk AV, Karpova TS, Shanks JR, Ali M, Moffatt N, Howie RL, O'Dell A, McNally JG, Liebman SW, Chernoff YO, Wilkinson KD.

Mol Cell. 2011 Jul 22;43(2):242-52. doi: 10.1016/j.molcel.2011.07.001.

20.

Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast.

Lada AG, Krick CF, Kozmin SG, Mayorov VI, Karpova TS, Rogozin IB, Pavlov YI.

Biochemistry (Mosc). 2011 Jan;76(1):131-46.

21.

The arylstibonic acid compound NSC13746 disrupts B-ZIP binding to DNA in living cells.

Heyerdahl SL, Rozenberg J, Jamtgaard L, Rishi V, Varticovski L, Akah K, Scudiero D, Shoemaker RH, Karpova TS, Day RN, McNally JG, Vinson C.

Eur J Cell Biol. 2010 Jul;89(7):564-73. doi: 10.1016/j.ejcb.2009.11.029. Epub 2010 Apr 1.

PMID:
20362353
22.

Transient tumor-fibroblast interactions increase tumor cell malignancy by a TGF-Beta mediated mechanism in a mouse xenograft model of breast cancer.

Stuelten CH, Busch JI, Tang B, Flanders KC, Oshima A, Sutton E, Karpova TS, Roberts AB, Wakefield LM, Niederhuber JE.

PLoS One. 2010 Mar 23;5(3):e9832. doi: 10.1371/journal.pone.0009832.

23.

The interaction of NSBP1/HMGN5 with nucleosomes in euchromatin counteracts linker histone-mediated chromatin compaction and modulates transcription.

Rochman M, Postnikov Y, Correll S, Malicet C, Wincovitch S, Karpova TS, McNally JG, Wu X, Bubunenko NA, Grigoryev S, Bustin M.

Mol Cell. 2009 Sep 11;35(5):642-56. doi: 10.1016/j.molcel.2009.07.002.

24.

Regulation of TATA-binding protein dynamics in living yeast cells.

Sprouse RO, Karpova TS, Mueller F, Dasgupta A, McNally JG, Auble DT.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13304-8. doi: 10.1073/pnas.0801901105. Epub 2008 Sep 2.

25.

Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter.

Karpova TS, Kim MJ, Spriet C, Nalley K, Stasevich TJ, Kherrouche Z, Heliot L, McNally JG.

Science. 2008 Jan 25;319(5862):466-9. doi: 10.1126/science.1150559.

26.

Requirement for the budding yeast polo kinase Cdc5 in proper microtubule growth and dynamics.

Park CJ, Park JE, Karpova TS, Soung NK, Yu LR, Song S, Lee KH, Xia X, Kang E, Dabanoglu I, Oh DY, Zhang JY, Kang YH, Wincovitch S, Huffaker TC, Veenstra TD, McNally JG, Lee KS.

Eukaryot Cell. 2008 Mar;7(3):444-53. doi: 10.1128/EC.00283-07. Epub 2008 Jan 4.

27.

Changes in nucleoid morphology and origin localization upon inhibition or alteration of the actin homolog, MreB, of Vibrio cholerae.

Srivastava P, Demarre G, Karpova TS, McNally J, Chattoraj DK.

J Bacteriol. 2007 Oct;189(20):7450-63. Epub 2007 Aug 17.

28.

Organization of chromatin and histone modifications at a transcription site.

Müller WG, Rieder D, Karpova TS, John S, Trajanoski Z, McNally JG.

J Cell Biol. 2007 Jun 18;177(6):957-67.

29.

Hsp90 inhibition transiently activates Src kinase and promotes Src-dependent Akt and Erk activation.

Koga F, Xu W, Karpova TS, McNally JG, Baron R, Neckers L.

Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11318-22. Epub 2006 Jul 14.

30.

Breast cancer cells induce stromal fibroblasts to express MMP-9 via secretion of TNF-alpha and TGF-beta.

Stuelten CH, DaCosta Byfield S, Arany PR, Karpova TS, Stetler-Stevenson WG, Roberts AB.

J Cell Sci. 2005 May 15;118(Pt 10):2143-53. Epub 2005 Apr 26.

31.

Dynamic interactions of a transcription factor with DNA are accelerated by a chromatin remodeller.

Karpova TS, Chen TY, Sprague BL, McNally JG.

EMBO Rep. 2004 Nov;5(11):1064-70.

32.

In vivo kinetics of Cajal body components.

Dundr M, Hebert MD, Karpova TS, Stanek D, Xu H, Shpargel KB, Meier UT, Neugebauer KM, Matera AG, Misteli T.

J Cell Biol. 2004 Mar 15;164(6):831-42.

33.

Jab1/CSN5, a component of the COP9 signalosome, regulates transforming growth factor beta signaling by binding to Smad7 and promoting its degradation.

Kim BC, Lee HJ, Park SH, Lee SR, Karpova TS, McNally JG, Felici A, Lee DK, Kim SJ.

Mol Cell Biol. 2004 Mar;24(6):2251-62.

35.

TLP, a novel modulator of TGF-beta signaling, has opposite effects on Smad2- and Smad3-dependent signaling.

Felici A, Wurthner JU, Parks WT, Giam LR, Reiss M, Karpova TS, McNally JG, Roberts AB.

EMBO J. 2003 Sep 1;22(17):4465-77.

36.

Flow cytometric measurement of fluorescence (Förster) resonance energy transfer from cyan fluorescent protein to yellow fluorescent protein using single-laser excitation at 458 nm.

He L, Bradrick TD, Karpova TS, Wu X, Fox MH, Fischer R, McNally JG, Knutson JR, Grammer AC, Lipsky PE.

Cytometry A. 2003 May;53(1):39-54.

37.

Fluorescence resonance energy transfer from cyan to yellow fluorescent protein detected by acceptor photobleaching using confocal microscopy and a single laser.

Karpova TS, Baumann CT, He L, Wu X, Grammer A, Lipsky P, Hager GL, McNally JG.

J Microsc. 2003 Jan;209(Pt 1):56-70.

38.

The vesicular transport protein Cgp1p/Vps54p/Tcs3p/Luv1p is required for the integrity of the actin cytoskeleton.

Fiedler TA, Karpova TS, Fleig U, Young ME, Cooper JA, Hegemann JH.

Mol Genet Genomics. 2002 Oct;268(2):190-205. Epub 2002 Sep 20.

PMID:
12395193
39.

Quantitative analysis of actin patch movement in yeast.

Carlsson AE, Shah AD, Elking D, Karpova TS, Cooper JA.

Biophys J. 2002 May;82(5):2333-43.

40.

SUMO-1 targets RanGAP1 to kinetochores and mitotic spindles.

Joseph J, Tan SH, Karpova TS, McNally JG, Dasso M.

J Cell Biol. 2002 Feb 18;156(4):595-602. Epub 2002 Feb 18.

41.

The Sur7p family defines novel cortical domains in Saccharomyces cerevisiae, affects sphingolipid metabolism, and is involved in sporulation.

Young ME, Karpova TS, Brügger B, Moschenross DM, Wang GK, Schneiter R, Wieland FT, Cooper JA.

Mol Cell Biol. 2002 Feb;22(3):927-34.

42.

Role of actin and Myo2p in polarized secretion and growth of Saccharomyces cerevisiae.

Karpova TS, Reck-Peterson SL, Elkind NB, Mooseker MS, Novick PJ, Cooper JA.

Mol Biol Cell. 2000 May;11(5):1727-37.

43.

Assembly and function of the actin cytoskeleton of yeast: relationships between cables and patches.

Karpova TS, McNally JG, Moltz SL, Cooper JA.

J Cell Biol. 1998 Sep 21;142(6):1501-17.

44.

Depolarization of the actin cytoskeleton is a specific phenotype in Saccharomyces cerevisiae.

Karpova TS, Moltz SL, Riles LE, Güldener U, Hegemann JH, Veronneau S, Bussey H, Cooper JA.

J Cell Sci. 1998 Sep;111 ( Pt 17):2689-96.

45.

Movement of cortical actin patches in yeast.

Waddle JA, Karpova TS, Waterston RH, Cooper JA.

J Cell Biol. 1996 Mar;132(5):861-70.

46.

Mutational analysis of capping protein function in Saccharomyces cerevisiae.

Sizonenko GI, Karpova TS, Gattermeir DJ, Cooper JA.

Mol Biol Cell. 1996 Jan;7(1):1-15.

47.

Actin filaments in yeast are unstable in the absence of capping protein or fimbrin.

Karpova TS, Tatchell K, Cooper JA.

J Cell Biol. 1995 Dec;131(6 Pt 1):1483-93.

50.

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