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Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA.

Langley SA, Miga KH, Karpen GH, Langley CH.

Elife. 2019 Jun 25;8. pii: e42989. doi: 10.7554/eLife.42989.


Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A.

Janssen A, Colmenares SU, Lee T, Karpen GH.

Genes Dev. 2019 Jan 1;33(1-2):103-115. doi: 10.1101/gad.317537.118. Epub 2018 Dec 21.


Heterochromatin: Guardian of the Genome.

Janssen A, Colmenares SU, Karpen GH.

Annu Rev Cell Dev Biol. 2018 Oct 6;34:265-288. doi: 10.1146/annurev-cellbio-100617-062653. Epub 2018 Jul 25. Review.


Exploring the role of CENP-A Ser18 phosphorylation in CIN and Tumorigenesis.

Zhang W, Karpen GH, Zhang Q.

Cell Cycle. 2017;16(24):2323-2325. doi: 10.1080/15384101.2017.1387698. Epub 2017 Dec 6.


FBW7 Loss Promotes Chromosomal Instability and Tumorigenesis via Cyclin E1/CDK2-Mediated Phosphorylation of CENP-A.

Takada M, Zhang W, Suzuki A, Kuroda TS, Yu Z, Inuzuka H, Gao D, Wan L, Zhuang M, Hu L, Zhai B, Fry CJ, Bloom K, Li G, Karpen GH, Wei W, Zhang Q.

Cancer Res. 2017 Sep 15;77(18):4881-4893. doi: 10.1158/0008-5472.CAN-17-1240. Epub 2017 Jul 31.


Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.

Colmenares SU, Swenson JM, Langley SA, Kennedy C, Costes SV, Karpen GH.

Dev Cell. 2017 Jul 24;42(2):156-169.e5. doi: 10.1016/j.devcel.2017.06.014.


Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution.

Lee YCG, Karpen GH.

Elife. 2017 Jul 11;6. pii: e25762. doi: 10.7554/eLife.25762.


Phase separation drives heterochromatin domain formation.

Strom AR, Emelyanov AV, Mir M, Fyodorov DV, Darzacq X, Karpen GH.

Nature. 2017 Jul 13;547(7662):241-245. doi: 10.1038/nature22989. Epub 2017 Jun 21.


Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome.

Snijders AM, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, Metz TO, Mao JH.

Nat Microbiol. 2016 Nov 28;2:16221. doi: 10.1038/nmicrobiol.2016.221.


Centromere and kinetochore gene misexpression predicts cancer patient survival and response to radiotherapy and chemotherapy.

Zhang W, Mao JH, Zhu W, Jain AK, Liu K, Brown JB, Karpen GH.

Nat Commun. 2016 Aug 31;7:12619. doi: 10.1038/ncomms12619.


The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic.

Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH.

Elife. 2016 Aug 11;5. pii: e16096. doi: 10.7554/eLife.16096.


A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin.

Janssen A, Breuer GA, Brinkman EK, van der Meulen AI, Borden SV, van Steensel B, Bindra RS, LaRocque JR, Karpen GH.

Genes Dev. 2016 Jul 15;30(14):1645-57. doi: 10.1101/gad.283028.116.


Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice.

Mao JH, Langley SA, Huang Y, Hang M, Bouchard KE, Celniker SE, Brown JB, Jansson JK, Karpen GH, Snijders AM.

Sci Rep. 2015 Nov 9;5:16247. doi: 10.1038/srep16247.


Heterochromatic breaks move to the nuclear periphery to continue recombinational repair.

Ryu T, Spatola B, Delabaere L, Bowlin K, Hopp H, Kunitake R, Karpen GH, Chiolo I.

Nat Cell Biol. 2015 Nov;17(11):1401-11. doi: 10.1038/ncb3258. Epub 2015 Oct 26.


Identification of genetic loci that control mammary tumor susceptibility through the host microenvironment.

Zhang P, Lo A, Huang Y, Huang G, Liang G, Mott J, Karpen GH, Blakely EA, Bissell MJ, Barcellos-Hoff MH, Snijders AM, Mao JH.

Sci Rep. 2015 Mar 9;5:8919. doi: 10.1038/srep08919.


The Release 6 reference sequence of the Drosophila melanogaster genome.

Hoskins RA, Carlson JW, Wan KH, Park S, Mendez I, Galle SE, Booth BW, Pfeiffer BD, George RA, Svirskas R, Krzywinski M, Schein J, Accardo MC, Damia E, Messina G, Méndez-Lago M, de Pablos B, Demakova OV, Andreyeva EN, Boldyreva LV, Marra M, Carvalho AB, Dimitri P, Villasante A, Zhimulev IF, Rubin GM, Karpen GH, Celniker SE.

Genome Res. 2015 Mar;25(3):445-58. doi: 10.1101/gr.185579.114. Epub 2015 Jan 14.


Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.


An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival.

Snijders AM, Langley S, Mao JH, Bhatnagar S, Bjornstad KA, Rosen CJ, Lo A, Huang Y, Blakely EA, Karpen GH, Bissell MJ, Wyrobek AJ.

Oncotarget. 2014 Jun 30;5(12):4011-25.


Nucleosomes shape DNA polymorphism and divergence.

Langley SA, Karpen GH, Langley CH.

PLoS Genet. 2014 Jul 3;10(7):e1004457. doi: 10.1371/journal.pgen.1004457. eCollection 2014 Jul.


Editorial overview: Cell nucleus: the nucleus: a dynamic organelle.

Rout MP, Karpen GH.

Curr Opin Cell Biol. 2014 Jun;28:iv-vii. doi: 10.1016/ Epub 2014 Jun 4. No abstract available.


Impact of sequencing depth in ChIP-seq experiments.

Jung YL, Luquette LJ, Ho JW, Ferrari F, Tolstorukov M, Minoda A, Issner R, Epstein CB, Karpen GH, Kuroda MI, Park PJ.

Nucleic Acids Res. 2014 May;42(9):e74. doi: 10.1093/nar/gku178. Epub 2014 Mar 5.


Solo or doppio: how many CENP-As make a centromeric nucleosome?

Dunleavy EM, Zhang W, Karpen GH.

Nat Struct Mol Biol. 2013 Jun;20(6):648-50. doi: 10.1038/nsmb.2602. No abstract available.


The cell cycle timing of centromeric chromatin assembly in Drosophila meiosis is distinct from mitosis yet requires CAL1 and CENP-C.

Dunleavy EM, Beier NL, Gorgescu W, Tang J, Costes SV, Karpen GH.

PLoS Biol. 2012;10(12):e1001460. doi: 10.1371/journal.pbio.1001460. Epub 2012 Dec 27.


Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, Elgin SC.

PLoS Genet. 2012 Sep;8(9):e1002954. doi: 10.1371/journal.pgen.1002954. Epub 2012 Sep 20.


Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V.

Genome Res. 2012 Nov;22(11):2188-98. doi: 10.1101/gr.138156.112. Epub 2012 Jul 5. Erratum in: Genome Res. 2013 Feb;23(2):409.


Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, Karpen GH, Pirrotta V, Kuroda MI, Park PJ.

PLoS Genet. 2012;8(4):e1002646. doi: 10.1371/journal.pgen.1002646. Epub 2012 Apr 26. Erratum in: PLoS Genet. 2014 Jan;10(1). doi: 10.1371/annotation/39c76721-c8e1-4d42-ae6b-33063ce207d2.


Assembly of Drosophila centromeric nucleosomes requires CID dimerization.

Zhang W, Colmenares SU, Karpen GH.

Mol Cell. 2012 Jan 27;45(2):263-9. doi: 10.1016/j.molcel.2011.12.010. Epub 2011 Dec 29.


H3.3 is deposited at centromeres in S phase as a placeholder for newly assembled CENP-A in G₁ phase.

Dunleavy EM, Almouzni G, Karpen GH.

Nucleus. 2011 Mar-Apr;2(2):146-57. doi: 10.4161/nucl.2.2.15211.


Assembly of Drosophila centromeric chromatin proteins during mitosis.

Mellone BG, Grive KJ, Shteyn V, Bowers SR, Oderberg I, Karpen GH.

PLoS Genet. 2011 May;7(5):e1002068. doi: 10.1371/journal.pgen.1002068. Epub 2011 May 12.


Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.

Chiolo I, Minoda A, Colmenares SU, Polyzos A, Costes SV, Karpen GH.

Cell. 2011 Mar 4;144(5):732-44. doi: 10.1016/j.cell.2011.02.012. Epub 2011 Feb 25.


Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.


Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.


Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.

Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, Tolstorukov MY, Gorchakov AA, Jaffe JD, Kennedy C, Linder-Basso D, Peach SE, Shanower G, Zheng H, Kuroda MI, Pirrotta V, Park PJ, Elgin SC, Karpen GH.

Genome Res. 2011 Feb;21(2):147-63. doi: 10.1101/gr.110098.110. Epub 2010 Dec 22.


An assessment of histone-modification antibody quality.

Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, Luu Y, Ngo Q, Perry M, Rechtsteiner A, Riddle NC, Schwartz YB, Shanower GA, Vielle A, Ahringer J, Elgin SC, Kuroda MI, Pirrotta V, Ren B, Strome S, Park PJ, Karpen GH, Hawkins RD, Lieb JD.

Nat Struct Mol Biol. 2011 Jan;18(1):91-3. doi: 10.1038/nsmb.1972. Epub 2010 Dec 5.


Preparation of high-molecular-weight DNA from Drosophila embryos.

Karpen GH.

Cold Spring Harb Protoc. 2009 Jul;2009(7):pdb.prot5254. doi: 10.1101/pdb.prot5254.


Identification of a physiological E2 module for the human anaphase-promoting complex.

Williamson A, Wickliffe KE, Mellone BG, Song L, Karpen GH, Rape M.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18213-8. doi: 10.1073/pnas.0907887106. Epub 2009 Oct 12.


Unlocking the secrets of the genome.

Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH; modENCODE Consortium.

Nature. 2009 Jun 18;459(7249):927-30. doi: 10.1038/459927a. No abstract available.


Frodos found: Behold the CENP-a "Ring" bearers.

Mellone BG, Zhang W, Karpen GH.

Cell. 2009 May 1;137(3):409-12. doi: 10.1016/j.cell.2009.04.035. Review.


Heterochromatic genome stability requires regulators of histone H3 K9 methylation.

Peng JC, Karpen GH.

PLoS Genet. 2009 Mar;5(3):e1000435. doi: 10.1371/journal.pgen.1000435. Epub 2009 Mar 27.


Genome-wide analysis reveals a cell cycle-dependent mechanism controlling centromere propagation.

Erhardt S, Mellone BG, Betts CM, Zhang W, Karpen GH, Straight AF.

J Cell Biol. 2008 Dec 1;183(5):805-18. doi: 10.1083/jcb.200806038.


Epigenetic regulation of centromeric chromatin: old dogs, new tricks?

Allshire RC, Karpen GH.

Nat Rev Genet. 2008 Dec;9(12):923-37. doi: 10.1038/nrg2466. Review.


Epigenetic regulation of heterochromatic DNA stability.

Peng JC, Karpen GH.

Curr Opin Genet Dev. 2008 Apr;18(2):204-11. doi: 10.1016/j.gde.2008.01.021. Epub 2008 Mar 26. Review.


Evolution of genes and genomes on the Drosophila phylogeny.

Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I.

Nature. 2007 Nov 8;450(7167):203-18.


A specialized nucleosome has a "point" to make.

Zhang W, Mellone BG, Karpen GH.

Cell. 2007 Jun 15;129(6):1047-9.


Sequence finishing and mapping of Drosophila melanogaster heterochromatin.

Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE.

Science. 2007 Jun 15;316(5831):1625-8.


The Release 5.1 annotation of Drosophila melanogaster heterochromatin.

Smith CD, Shu S, Mungall CJ, Karpen GH.

Science. 2007 Jun 15;316(5831):1586-91. Erratum in: Science. 2007 Sep 7;317(5843):1325.


H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability.

Peng JC, Karpen GH.

Nat Cell Biol. 2007 Jan;9(1):25-35. Epub 2006 Dec 10.


Improved repeat identification and masking in Dipterans.

Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH.

Gene. 2007 Mar 1;389(1):1-9. Epub 2006 Oct 12.


Drosophila CENP-A mutations cause a BubR1-dependent early mitotic delay without normal localization of kinetochore components.

Blower MD, Daigle T, Kaufman T, Karpen GH.

PLoS Genet. 2006 Jul;2(7):e110. Epub 2006 Jun 5.


The ABCs of centromeres.

Mellone B, Erhardt S, Karpen GH.

Nat Cell Biol. 2006 May;8(5):427-9. No abstract available.


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