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Items: 20

1.

Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments.

Lukešová S, Karlicki M, Tomečková Hadariová L, Szabová J, Karnkowska A, Hampl V.

Environ Microbiol Rep. 2020 Feb;12(1):78-91. doi: 10.1111/1758-2229.12817. Epub 2019 Dec 26.

PMID:
31845515
2.

Should I stay or should I go? Retention and loss of components in vestigial endosymbiotic organelles.

Maciszewski K, Karnkowska A.

Curr Opin Genet Dev. 2019 Oct;58-59:33-39. doi: 10.1016/j.gde.2019.07.013. Epub 2019 Aug 26. Review.

PMID:
31466038
3.

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.

Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Hampl V.

Mol Biol Evol. 2019 Oct 1;36(10):2292-2312. doi: 10.1093/molbev/msz147.

4.

Dictyochophyceae Plastid Genomes Reveal Unusual Variability in Their Organization.

Han KY, Maciszewski K, Graf L, Yang JH, Andersen RA, Karnkowska A, Yoon HS.

J Phycol. 2019 Oct;55(5):1166-1180. doi: 10.1111/jpy.12904. Epub 2019 Aug 27.

PMID:
31325913
5.

Dynamic evolution of inverted repeats in Euglenophyta plastid genomes.

Karnkowska A, Bennett MS, Triemer RE.

Sci Rep. 2018 Oct 30;8(1):16071. doi: 10.1038/s41598-018-34457-w.

6.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.

J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691.

7.

cytb as a New Genetic Marker for Differentiation of Prototheca Species.

Jagielski T, Gawor J, Bakuła Z, Decewicz P, Maciszewski K, Karnkowska A.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00584-18. doi: 10.1128/JCM.00584-18. Print 2018 Oct.

8.

Pseudotrichonympha leei, Pseudotrichonympha lifesoni, and Pseudotrichonympha pearti, new species of parabasalian flagellates and the description of a rotating subcellular structure.

Del Campo J, James ER, Hirakawa Y, Fiorito R, Kolisko M, Irwin NAT, Mathur V, Boscaro V, Hehenberger E, Karnkowska A, Scheffrahn RH, Keeling PJ.

Sci Rep. 2017 Nov 27;7(1):16349. doi: 10.1038/s41598-017-16259-8.

9.

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ.

ISME J. 2018 Jan;12(1):304-308. doi: 10.1038/ismej.2017.167. Epub 2017 Oct 10.

10.

Molecular characterization and phylogeny of four new species of the genus Trichonympha (Parabasalia, Trichonymphea) from lower termite hindguts.

Boscaro V, James ER, Fiorito R, Hehenberger E, Karnkowska A, Del Campo J, Kolisko M, Irwin NAT, Mathur V, Scheffrahn RH, Keeling PJ.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3570-3575. doi: 10.1099/ijsem.0.002169. Epub 2017 Aug 25.

PMID:
28840814
11.

Evolutionary Origin of Euglena.

Zakryś B, Milanowski R, Karnkowska A.

Adv Exp Med Biol. 2017;979:3-17. doi: 10.1007/978-3-319-54910-1_1. Review.

PMID:
28429314
12.

The curious case of vanishing mitochondria.

Karnkowska A, Hampl V.

Microb Cell. 2016 Sep 30;3(10):491-494. doi: 10.15698/mic2016.10.531.

13.

Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes.

Novák L, Zubáčová Z, Karnkowska A, Kolisko M, Hroudová M, Stairs CW, Simpson AG, Keeling PJ, Roger AJ, Čepička I, Hampl V.

BMC Evol Biol. 2016 Oct 6;16(1):197.

14.

DNA barcoding in autotrophic euglenids: evaluation of COI and 18s rDNA.

Łukomska-Kowalczyk M, Karnkowska A, Krupska M, Milanowski R, Zakryś B.

J Phycol. 2016 Dec;52(6):951-960. doi: 10.1111/jpy.12439. Epub 2016 Aug 31.

PMID:
27317884
15.

A Eukaryote without a Mitochondrial Organelle.

Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V.

Curr Biol. 2016 May 23;26(10):1274-84. doi: 10.1016/j.cub.2016.03.053. Epub 2016 May 12.

16.

Delimiting species in the Phacus longicauda complex (Euglenida) through morphological and molecular analyses.

Łukomska-Kowalczyk M, Karnkowska A, Milanowski R, Łach Ł, Zakryś B.

J Phycol. 2015 Dec;51(6):1147-57. doi: 10.1111/jpy.12352. Epub 2015 Nov 2.

PMID:
26987009
17.

Intermediate introns in nuclear genes of euglenids - are they a distinct type?

Milanowski R, Gumińska N, Karnkowska A, Ishikawa T, Zakryś B.

BMC Evol Biol. 2016 Feb 29;16:49. doi: 10.1186/s12862-016-0620-5.

18.

Phylogenetic Relationships and Morphological Character Evolution of Photosynthetic Euglenids (Excavata) Inferred from Taxon-rich Analyses of Five Genes.

Karnkowska A, Bennett MS, Watza D, Kim JI, Zakryś B, Triemer RE.

J Eukaryot Microbiol. 2015 May-Jun;62(3):362-73. doi: 10.1111/jeu.12192. Epub 2014 Dec 2.

PMID:
25377266
19.

Molecular (PCR-DGGE) versus morphological approach: analysis of taxonomic composition of potentially toxic cyanobacteria in freshwater lakes.

Bukowska A, Bielczyńska A, Karnkowska A, Chróst RJ, Jasser I.

Aquat Biosyst. 2014 Feb 12;10(1):2. doi: 10.1186/2046-9063-10-2.

20.

Distribution of conventional and nonconventional introns in tubulin (α and β) genes of euglenids.

Milanowski R, Karnkowska A, Ishikawa T, Zakryś B.

Mol Biol Evol. 2014 Mar;31(3):584-93. doi: 10.1093/molbev/mst227. Epub 2013 Dec 2.

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