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Cardiac Manifestations of Noonan Syndrome.

Karnik R, Geiger M.

Pediatr Endocrinol Rev. 2019 May;16(Suppl 2):471-476. doi: 10.17458/per.vol16.2019.kpg.manifestationsnoonan.


Unusual Roles of Secretory SNARE SYP132 in Plasma Membrane H+-ATPase Traffic and Vegetative Plant Growth.

Xia L, Mar Marquès-Bueno M, Bruce CG, Karnik R.

Plant Physiol. 2019 Jun;180(2):837-858. doi: 10.1104/pp.19.00266. Epub 2019 Mar 29.


Dual Sites for SEC11 on the SNARE SYP121 Implicate a Binding Exchange during Secretory Traffic.

Zhang B, Karnik R, Alvim J, Donald N, Blatt MR.

Plant Physiol. 2019 May;180(1):228-239. doi: 10.1104/pp.18.01315. Epub 2019 Mar 8.


Drug loading augmentation in polymeric nanoparticles using a coaxial turbulent jet mixer: Yong investigator perspective.

Lim JM, Cai T, Mandaric S, Chopra S, Han H, Jang S, Il Choi W, Langer R, Farokhzad OC, Karnik R.

J Colloid Interface Sci. 2019 Mar 7;538:45-50. doi: 10.1016/j.jcis.2018.11.029. Epub 2018 Nov 10.


Targets and genomic constraints of ectopic Dnmt3b expression.

Zhang Y, Charlton J, Karnik R, Beerman I, Smith ZD, Gu H, Boyle P, Mi X, Clement K, Pop R, Gnirke A, Rossi DJ, Meissner A.

Elife. 2018 Nov 23;7. pii: e40757. doi: 10.7554/eLife.40757.


Facile Fabrication of Large-Area Atomically Thin Membranes by Direct Synthesis of Graphene with Nanoscale Porosity.

Kidambi PR, Nguyen GD, Zhang S, Chen Q, Kong J, Warner J, Li AP, Karnik R.

Adv Mater. 2018 Dec;30(49):e1804977. doi: 10.1002/adma.201804977. Epub 2018 Oct 9.


SNAREs SYP121 and SYP122 Mediate the Secretion of Distinct Cargo Subsets.

Waghmare S, Lileikyte E, Karnik R, Goodman JK, Blatt MR, Jones AME.

Plant Physiol. 2018 Dec;178(4):1679-1688. doi: 10.1104/pp.18.00832. Epub 2018 Oct 22.


In-field determination of soil ion content using a handheld device and screen-printed solid-state ion-selective electrodes.

Rosenberg R, Bono MS Jr, Braganza S, Vaishnav C, Karnik R, Hart AJ.

PLoS One. 2018 Sep 25;13(9):e0203862. doi: 10.1371/journal.pone.0203862. eCollection 2018.


Chromatin-dependent allosteric regulation of DNMT3A activity by MeCP2.

Rajavelu A, Lungu C, Emperle M, Dukatz M, Bröhm A, Broche J, Hanelt I, Parsa E, Schiffers S, Karnik R, Meissner A, Carell T, Rathert P, Jurkowska RZ, Jeltsch A.

Nucleic Acids Res. 2018 Sep 28;46(17):9044-9056. doi: 10.1093/nar/gky715.


A GPI Signal Peptide-Anchored Split-Ubiquitin (GPS) System for Detecting Soluble Bait Protein Interactions at the Membrane.

Zhang B, Karnik R, Donald N, Blatt MR.

Plant Physiol. 2018 Sep;178(1):13-17. doi: 10.1104/pp.18.00577. Epub 2018 Jul 23. No abstract available.


Transmission of classically entangled beams through mouse brain tissue.

Mamani S, Shi L, Ahmed T, Karnik R, Rodríguez-Contreras A, Nolan D, Alfano R.

J Biophotonics. 2018 Dec;11(12):e201800096. doi: 10.1002/jbio.201800096. Epub 2018 Sep 5.


Antibody-modified conduits for highly selective cytokine elimination from blood.

McAlvin JB, Wylie RG, Ramchander K, Nguyen MT, Lok CK, Moroi M, Shomorony A, Vasilyev NV, Armstrong P, Yang J, Lieber AM, Okonkwo OS, Karnik R, Kohane DS.

JCI Insight. 2018 Jul 12;3(13). pii: 121133. doi: 10.1172/jci.insight.121133.


Gating control and K+ uptake by the KAT1 K+ channel leaveraged through membrane anchoring of the trafficking protein SYP121.

Lefoulon C, Waghmare S, Karnik R, Blatt MR.

Plant Cell Environ. 2018 Nov;41(11):2668-2677. doi: 10.1111/pce.13392. Epub 2018 Aug 1.


X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs.

Pasque V, Karnik R, Chronis C, Petrella P, Langerman J, Bonora G, Song J, Vanheer L, Sadhu Dimashkie A, Meissner A, Plath K.

Stem Cell Reports. 2018 May 8;10(5):1537-1550. doi: 10.1016/j.stemcr.2018.03.019. Epub 2018 Apr 19.


Abnormalities in Left Ventricular Rotation Are Inherent in Young Children with Repaired Tetralogy of Fallot and Are Independent of Right Ventricular Dilation.

Karnik R, Uppu SC, Tozzi M, Doucette J, Lytrivi ID, Geiger M, Klas B, Parness IA, Shenoy R, Rajagopal H, Srivastava S.

Pediatr Cardiol. 2018 Aug;39(6):1172-1180. doi: 10.1007/s00246-018-1877-9. Epub 2018 Apr 11.


A Scalable Route to Nanoporous Large-Area Atomically Thin Graphene Membranes by Roll-to-Roll Chemical Vapor Deposition and Polymer Support Casting.

Kidambi PR, Mariappan DD, Dee NT, Vyatskikh A, Zhang S, Karnik R, Hart AJ.

ACS Appl Mater Interfaces. 2018 Mar 28;10(12):10369-10378. doi: 10.1021/acsami.8b00846. Epub 2018 Mar 19.


Validation of Right Atrial Area as a Measure of Right Atrial Size and Normal Values of in Healthy Pediatric Population by Two-Dimensional Echocardiography.

Rajagopal H, Uppu SC, Weigand J, Lee S, Karnik R, Ko H, Bhatla P, Nielsen J, Doucette J, Parness I, Srivastava S.

Pediatr Cardiol. 2018 Jun;39(5):892-901. doi: 10.1007/s00246-018-1838-3. Epub 2018 Mar 9.


Zika Virus Alters DNA Methylation of Neural Genes in an Organoid Model of the Developing Human Brain.

Janssens S, Schotsaert M, Karnik R, Balasubramaniam V, Dejosez M, Meissner A, García-Sastre A, Zwaka TP.

mSystems. 2018 Feb 6;3(1). pii: e00219-17. doi: 10.1128/mSystems.00219-17. eCollection 2018 Jan-Feb.


Genetic determinants and epigenetic effects of pioneer-factor occupancy.

Donaghey J, Thakurela S, Charlton J, Chen JS, Smith ZD, Gu H, Pop R, Clement K, Stamenova EK, Karnik R, Kelley DR, Gifford CA, Cacchiarelli D, Rinn JL, Gnirke A, Ziller MJ, Meissner A.

Nat Genet. 2018 Feb;50(2):250-258. doi: 10.1038/s41588-017-0034-3. Epub 2018 Jan 22.


Microfluidic multiplexing of solid-state nanopores.

Jain T, Rasera BC, Guerrero RJS, Lim JM, Karnik R.

J Phys Condens Matter. 2017 Dec 6;29(48):484001. doi: 10.1088/1361-648X/aa9455.


Enhanced water transport and salt rejection through hydrophobic zeolite pores.

Humplik T, Lee J, O'Hern S, Laoui T, Karnik R, Wang EN.

Nanotechnology. 2017 Dec 15;28(50):505703. doi: 10.1088/1361-6528/aa9773.


Water and Solute Transport Governed by Tunable Pore Size Distributions in Nanoporous Graphene Membranes.

Jang D, Idrobo JC, Laoui T, Karnik R.

ACS Nano. 2017 Oct 24;11(10):10042-10052. doi: 10.1021/acsnano.7b04299. Epub 2017 Oct 10.


Mechanistic understanding of in vivo protein corona formation on polymeric nanoparticles and impact on pharmacokinetics.

Bertrand N, Grenier P, Mahmoudi M, Lima EM, Appel EA, Dormont F, Lim JM, Karnik R, Langer R, Farokhzad OC.

Nat Commun. 2017 Oct 3;8(1):777. doi: 10.1038/s41467-017-00600-w.


Nanoporous Atomically Thin Graphene Membranes for Desalting and Dialysis Applications.

Kidambi PR, Jang D, Idrobo JC, Boutilier MSH, Wang L, Kong J, Karnik R.

Adv Mater. 2017 Sep;29(33). doi: 10.1002/adma.201700277. Epub 2017 Jun 28.


Molecular Sieving Across Centimeter-Scale Single-Layer Nanoporous Graphene Membranes.

Boutilier MSH, Jang D, Idrobo JC, Kidambi PR, Hadjiconstantinou NG, Karnik R.

ACS Nano. 2017 Jun 27;11(6):5726-5736. doi: 10.1021/acsnano.7b01231. Epub 2017 Jun 13.


Assessment and control of the impermeability of graphene for atomically thin membranes and barriers.

Kidambi PR, Terry RA, Wang L, Boutilier MSH, Jang D, Kong J, Karnik R.

Nanoscale. 2017 Jun 22;9(24):8496-8507. doi: 10.1039/c7nr01921a.


Fundamental transport mechanisms, fabrication and potential applications of nanoporous atomically thin membranes.

Wang L, Boutilier MSH, Kidambi PR, Jang D, Hadjiconstantinou NG, Karnik R.

Nat Nanotechnol. 2017 Jun 6;12(6):509-522. doi: 10.1038/nnano.2017.72. Review.


Harnessing the hygroscopic and biofluorescent behaviors of genetically tractable microbial cells to design biohybrid wearables.

Wang W, Yao L, Cheng CY, Zhang T, Atsumi H, Wang L, Wang G, Anilionyte O, Steiner H, Ou J, Zhou K, Wawrousek C, Petrecca K, Belcher AM, Karnik R, Zhao X, Wang DIC, Ishii H.

Sci Adv. 2017 May 19;3(5):e1601984. doi: 10.1126/sciadv.1601984. eCollection 2017 May.


Single-Layer Graphene Membranes Withstand Ultrahigh Applied Pressure.

Wang L, Williams CM, Boutilier MSH, Kidambi PR, Karnik R.

Nano Lett. 2017 May 10;17(5):3081-3088. doi: 10.1021/acs.nanolett.7b00442. Epub 2017 Apr 24.


Isolation of Circulating Plasma Cells in Multiple Myeloma Using CD138 Antibody-Based Capture in a Microfluidic Device.

Qasaimeh MA, Wu YC, Bose S, Menachery A, Talluri S, Gonzalez G, Fulciniti M, Karp JM, Prabhala RH, Karnik R.

Sci Rep. 2017 Apr 4;7:45681. doi: 10.1038/srep45681.


Design of Insulin-Loaded Nanoparticles Enabled by Multistep Control of Nanoprecipitation and Zinc Chelation.

Chopra S, Bertrand N, Lim JM, Wang A, Farokhzad OC, Karnik R.

ACS Appl Mater Interfaces. 2017 Apr 5;9(13):11440-11450. doi: 10.1021/acsami.6b16854. Epub 2017 Mar 21.


Knudsen effusion through polymer-coated three-layer porous graphene membranes.

Boutilier MS, Hadjiconstantinou NG, Karnik R.

Nanotechnology. 2017 May 5;28(18):184003. doi: 10.1088/1361-6528/aa680f. Epub 2017 Mar 21.


Selective Nanoscale Mass Transport across Atomically Thin Single Crystalline Graphene Membranes.

Kidambi PR, Boutilier MSH, Wang L, Jang D, Kim J, Karnik R.

Adv Mater. 2017 May;29(19). doi: 10.1002/adma.201605896. Epub 2017 Mar 17.


Accidental separation and lodgment of rotary endodontic file into the dentist's thumb.

Karnik R, Shetty S, Desai RS, Shetty K.

Indian J Dent Res. 2016 Nov-Dec;27(6):664-666. doi: 10.4103/0970-9290.199595.


VAMP721 Conformations Unmask an Extended Motif for K+ Channel Binding and Gating Control.

Zhang B, Karnik R, Waghmare S, Donald N, Blatt MR.

Plant Physiol. 2017 Jan;173(1):536-551. doi: 10.1104/pp.16.01549. Epub 2016 Nov 7.


Commandeering Channel Voltage Sensors for Secretion, Cell Turgor, and Volume Control.

Karnik R, Waghmare S, Zhang B, Larson E, Lefoulon C, Gonzalez W, Blatt MR.

Trends Plant Sci. 2017 Jan;22(1):81-95. doi: 10.1016/j.tplants.2016.10.006. Epub 2016 Oct 28. Review.


LKB1 loss links serine metabolism to DNA methylation and tumorigenesis.

Kottakis F, Nicolay BN, Roumane A, Karnik R, Gu H, Nagle JM, Boukhali M, Hayward MC, Li YY, Chen T, Liesa M, Hammerman PS, Wong KK, Hayes DN, Shirihai OS, Dyson NJ, Haas W, Meissner A, Bardeesy N.

Nature. 2016 Nov 17;539(7629):390-395. doi: 10.1038/nature20132. Epub 2016 Oct 31.


Pediatric Pulmonary Hypertension.

Rajagopal H, Karnik R, Sahulee R.

Pediatr Rev. 2016 Mar;37(3):129-31. doi: 10.1542/pir.2015-0067. Review. No abstract available.


Polymeric Nanoparticles Amenable to Simultaneous Installation of Exterior Targeting and Interior Therapeutic Proteins.

Zhu X, Wu J, Shan W, Tao W, Zhao L, Lim JM, D'Ortenzio M, Karnik R, Huang Y, Shi J, Farokhzad OC.

Angew Chem Int Ed Engl. 2016 Mar 1;55(10):3309-12. doi: 10.1002/anie.201509183. Epub 2016 Feb 5.


Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.

Karnik R, Beer MA.

PLoS One. 2015 Oct 14;10(10):e0140557. doi: 10.1371/journal.pone.0140557. eCollection 2015.


Heterogeneous sub-continuum ionic transport in statistically isolated graphene nanopores.

Jain T, Rasera BC, Guerrero RJ, Boutilier MS, O'Hern SC, Idrobo JC, Karnik R.

Nat Nanotechnol. 2015 Dec;10(12):1053-7. doi: 10.1038/nnano.2015.222. Epub 2015 Oct 5.


PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells.

Das PP, Hendrix DA, Apostolou E, Buchner AH, Canver MC, Beyaz S, Ljuboja D, Kuintzle R, Kim W, Karnik R, Shao Z, Xie H, Xu J, De Los Angeles A, Zhang Y, Choe J, Jun DL, Shen X, Gregory RI, Daley GQ, Meissner A, Kellis M, Hochedlinger K, Kim J, Orkin SH.

Cell Rep. 2015 Sep 1;12(9):1456-70. doi: 10.1016/j.celrep.2015.07.053. Epub 2015 Aug 20.


Ground State Conditions Induce Rapid Reorganization of Core Pluripotency Factor Binding before Global Epigenetic Reprogramming.

Galonska C, Ziller MJ, Karnik R, Meissner A.

Cell Stem Cell. 2015 Oct 1;17(4):462-70. doi: 10.1016/j.stem.2015.07.005. Epub 2015 Jul 30.


Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency.

Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford CA, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS.

Cell. 2015 Jul 16;162(2):412-424. doi: 10.1016/j.cell.2015.06.016.


One-year mortality in patients with acute ST-elevation myocardial infarction in the Vienna STEMI registry.

Jäger B, Farhan S, Kalla K, Glogar HD, Christ G, Karnik R, Norman G, Prachar H, Schreiber W, Kaff A, Podczeck-Schweighofer A, Weidinger F, Stefenelli T, Delle-Karth G, Laggner AN, Maurer G, Huber K; Vienna STEMI Registry Group.

Wien Klin Wochenschr. 2015 Jul;127(13-14):535-42. doi: 10.1007/s00508-015-0827-2. Epub 2015 Jul 11.


The Arabidopsis R-SNARE VAMP721 Interacts with KAT1 and KC1 K+ Channels to Moderate K+ Current at the Plasma Membrane.

Zhang B, Karnik R, Wang Y, Wallmeroth N, Blatt MR, Grefen C.

Plant Cell. 2015 Jun;27(6):1697-717. doi: 10.1105/tpc.15.00305. Epub 2015 May 22. Erratum in: Plant Cell. 2015 Oct;27(10):3013-7.


Nanofiltration across Defect-Sealed Nanoporous Monolayer Graphene.

O'Hern SC, Jang D, Bose S, Idrobo JC, Song Y, Laoui T, Kong J, Karnik R.

Nano Lett. 2015 May 13;15(5):3254-60. doi: 10.1021/acs.nanolett.5b00456. Epub 2015 Apr 27.


To "B" or not to "B": efficacy of a neonatal hepatitis B vaccination program to prevent primary liver cancer and end-stage liver disease.

Karnik R, Singal AG.

Gastroenterology. 2015 May;148(5):1073-5. doi: 10.1053/j.gastro.2015.03.037. Epub 2015 Mar 27. No abstract available.


Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells.

Liao J, Karnik R, Gu H, Ziller MJ, Clement K, Tsankov AM, Akopian V, Gifford CA, Donaghey J, Galonska C, Pop R, Reyon D, Tsai SQ, Mallard W, Joung JK, Rinn JL, Gnirke A, Meissner A.

Nat Genet. 2015 May;47(5):469-78. doi: 10.1038/ng.3258. Epub 2015 Mar 30.


Binding of SEC11 indicates its role in SNARE recycling after vesicle fusion and identifies two pathways for vesicular traffic to the plasma membrane.

Karnik R, Zhang B, Waghmare S, Aderhold C, Grefen C, Blatt MR.

Plant Cell. 2015 Mar;27(3):675-94. doi: 10.1105/tpc.114.134429. Epub 2015 Mar 6.

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