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Items: 25

1.

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence.

Pärnänen KMM, Narciso-da-Rocha C, Kneis D, Berendonk TU, Cacace D, Do TT, Elpers C, Fatta-Kassinos D, Henriques I, Jaeger T, Karkman A, Martinez JL, Michael SG, Michael-Kordatou I, O'Sullivan K, Rodriguez-Mozaz S, Schwartz T, Sheng H, Sørum H, Stedtfeld RD, Tiedje JM, Giustina SVD, Walsh F, Vaz-Moreira I, Virta M, Manaia CM.

Sci Adv. 2019 Mar 27;5(3):eaau9124. doi: 10.1126/sciadv.aau9124. eCollection 2019 Mar.

2.

Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments.

Karkman A, Pärnänen K, Larsson DGJ.

Nat Commun. 2019 Jan 8;10(1):80. doi: 10.1038/s41467-018-07992-3.

3.

Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements.

Pärnänen K, Karkman A, Hultman J, Lyra C, Bengtsson-Palme J, Larsson DGJ, Rautava S, Isolauri E, Salminen S, Kumar H, Satokari R, Virta M.

Nat Commun. 2018 Sep 24;9(1):3891. doi: 10.1038/s41467-018-06393-w.

4.

Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent.

Hultman J, Tamminen M, Pärnänen K, Cairns J, Karkman A, Virta M.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy038.

5.

Nature-oriented daycare diversifies skin microbiota in children-No robust association with allergies.

Lehtimäki J, Laatikainen T, Karkman A, von Hertzen L, Haahtela T, Hanski I, Ruokolainen L.

Pediatr Allergy Immunol. 2018 May;29(3):318-321. doi: 10.1111/pai.12872. Epub 2018 Feb 25. No abstract available.

PMID:
29420857
6.

Antibiotic-Resistance Genes in Waste Water.

Karkman A, Do TT, Walsh F, Virta MPJ.

Trends Microbiol. 2018 Mar;26(3):220-228. doi: 10.1016/j.tim.2017.09.005. Epub 2017 Oct 13. Review.

PMID:
29033338
7.

An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community.

Eronen-Rasimus E, Luhtanen AM, Rintala JM, Delille B, Dieckmann G, Karkman A, Tison JL.

ISME J. 2017 Oct;11(10):2345-2355. doi: 10.1038/ismej.2017.96. Epub 2017 Jul 14.

8.

Influence of Manure Application on the Environmental Resistome under Finnish Agricultural Practice with Restricted Antibiotic Use.

Muurinen J, Stedtfeld R, Karkman A, Pärnänen K, Tiedje J, Virta M.

Environ Sci Technol. 2017 Jun 6;51(11):5989-5999. doi: 10.1021/acs.est.7b00551. Epub 2017 May 11.

PMID:
28453251
9.

Patterns in the skin microbiota differ in children and teenagers between rural and urban environments.

Lehtimäki J, Karkman A, Laatikainen T, Paalanen L, von Hertzen L, Haahtela T, Hanski I, Ruokolainen L.

Sci Rep. 2017 Mar 31;7:45651. doi: 10.1038/srep45651.

10.

The ecology of human microbiota: dynamics and diversity in health and disease.

Karkman A, Lehtimäki J, Ruokolainen L.

Ann N Y Acad Sci. 2017 Jul;1399(1):78-92. doi: 10.1111/nyas.13326. Epub 2017 Mar 20. Review.

PMID:
28319653
11.

Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia.

Ruokolainen L, Paalanen L, Karkman A, Laatikainen T, von Hertzen L, Vlasoff T, Markelova O, Masyuk V, Auvinen P, Paulin L, Alenius H, Fyhrquist N, Hanski I, Mäkelä MJ, Zilber E, Jousilahti P, Vartiainen E, Haahtela T.

Clin Exp Allergy. 2017 May;47(5):665-674. doi: 10.1111/cea.12895. Epub 2017 Mar 6.

PMID:
28165640
12.

Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics.

Pärnänen K, Karkman A, Tamminen M, Lyra C, Hultman J, Paulin L, Virta M.

Sci Rep. 2016 Oct 21;6:35790. doi: 10.1038/srep35790.

13.

Bacterial communities in Arctic first-year drift ice during the winter/spring transition.

Eronen-Rasimus E, Piiparinen J, Karkman A, Lyra C, Gerland S, Kaartokallio H.

Environ Microbiol Rep. 2016 Aug;8(4):527-35. doi: 10.1111/1758-2229.12428. Epub 2016 Jun 27.

PMID:
27264318
14.

"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis.

Fondi M, Karkman A, Tamminen MV, Bosi E, Virta M, Fani R, Alm E, McInerney JO.

Genome Biol Evol. 2016 May 13;8(5):1388-400. doi: 10.1093/gbe/evw077.

15.

Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow.

Caucci S, Karkman A, Cacace D, Rybicki M, Timpel P, Voolaid V, Gurke R, Virta M, Berendonk TU.

FEMS Microbiol Ecol. 2016 May;92(5):fiw060. doi: 10.1093/femsec/fiw060. Epub 2016 Apr 11.

PMID:
27073234
16.

Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments.

Muziasari WI, Pärnänen K, Johnson TA, Lyra C, Karkman A, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw052. doi: 10.1093/femsec/fiw052. Epub 2016 Mar 13.

PMID:
26976842
17.

High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant.

Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M.

FEMS Microbiol Ecol. 2016 Mar;92(3). pii: fiw014. doi: 10.1093/femsec/fiw014. Epub 2016 Jan 31.

PMID:
26832203
18.

Cyanobacteria as a Source for Novel Anti-Leukemic Compounds.

Humisto A, Herfindal L, Jokela J, Karkman A, Bjørnstad R, Choudhury RR, Sivonen K.

Curr Pharm Biotechnol. 2016;17(1):78-91.

PMID:
26306745
19.

Discovery of bacterial polyhydroxyalkanoate synthase (PhaC)-encoding genes from seasonal Baltic Sea ice and cold estuarine waters.

Pärnänen K, Karkman A, Virta M, Eronen-Rasimus E, Kaartokallio H.

Extremophiles. 2015 Jan;19(1):197-206. doi: 10.1007/s00792-014-0699-9. Epub 2014 Oct 4.

PMID:
25280551
20.

Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load.

Laht M, Karkman A, Voolaid V, Ritz C, Tenson T, Virta M, Kisand V.

PLoS One. 2014 Aug 1;9(8):e103705. doi: 10.1371/journal.pone.0103705. eCollection 2014.

21.

Sulphonamide and trimethoprim resistance genes persist in sediments at Baltic Sea aquaculture farms but are not detected in the surrounding environment.

Muziasari WI, Managaki S, Pärnänen K, Karkman A, Lyra C, Tamminen M, Suzuki S, Virta M.

PLoS One. 2014 Mar 20;9(3):e92702. doi: 10.1371/journal.pone.0092702. eCollection 2014.

22.

Enterococcus rivorum sp. nov., from water of pristine brooks.

Niemi RM, Ollinkangas T, Paulin L, Svec P, Vandamme P, Karkman A, Kosina M, Lindström K.

Int J Syst Evol Microbiol. 2012 Sep;62(Pt 9):2169-73. doi: 10.1099/ijs.0.038257-0. Epub 2011 Nov 4.

PMID:
22058322
23.

Cold temperature decreases bacterial species richness in nitrogen-removing bioreactors treating inorganic mine waters.

Karkman A, Mattila K, Tamminen M, Virta M.

Biotechnol Bioeng. 2011 Dec;108(12):2876-83. doi: 10.1002/bit.23267. Epub 2011 Aug 4.

PMID:
21769859
24.

Fish farming affects the abundance and diversity of the mercury resistance gene merA in marine sediments.

Pitkänen LK, Tamminen M, Hynninen A, Karkman A, Corander J, Kotilainen A, Virta M.

Microbes Environ. 2011;26(3):205-11. Epub 2011 May 11.

25.

Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure.

Tamminen M, Karkman A, Lõhmus A, Muziasari WI, Takasu H, Wada S, Suzuki S, Virta M.

Environ Sci Technol. 2011 Jan 15;45(2):386-91. doi: 10.1021/es102725n. Epub 2010 Dec 15.

PMID:
21158437

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