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Items: 30

1.

A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins.

Jarmoskaite I, Denny SK, Vaidyanathan PP, Becker WR, Andreasson JOL, Layton CJ, Kappel K, Shivashankar V, Sreenivasan R, Das R, Greenleaf WJ, Herschlag D.

Mol Cell. 2019 Jun 6;74(5):966-981.e18. doi: 10.1016/j.molcel.2019.04.012. Epub 2019 May 8.

PMID:
31078383
2.

Blind tests of RNA-protein binding affinity prediction.

Kappel K, Jarmoskaite I, Vaidyanathan PP, Greenleaf WJ, Herschlag D, Das R.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8336-8341. doi: 10.1073/pnas.1819047116. Epub 2019 Apr 8.

PMID:
30962376
3.

Are current EU policies on GMOs justified?

Christiansen AT, Andersen MM, Kappel K.

Transgenic Res. 2019 Apr;28(2):267-286. doi: 10.1007/s11248-019-00120-x. Epub 2019 Mar 5.

PMID:
30838488
4.

Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking.

Kappel K, Das R.

Structure. 2019 Jan 2;27(1):140-151.e5. doi: 10.1016/j.str.2018.10.001. Epub 2018 Nov 8.

PMID:
30416038
5.

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R.

Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30.

PMID:
30377372
6.

Tuna labels matter in Europe: Mislabelling rates in different tuna products.

Sotelo CG, Velasco A, Perez-Martin RI, Kappel K, Schröder U, Verrez-Bagnis V, Jérôme M, Mendes R, Silva H, Mariani S, Griffiths A.

PLoS One. 2018 May 16;13(5):e0196641. doi: 10.1371/journal.pone.0196641. eCollection 2018.

7.

Architecture of an HIV-1 reverse transcriptase initiation complex.

Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV.

Nature. 2018 May;557(7703):118-122. doi: 10.1038/s41586-018-0055-9. Epub 2018 Apr 25.

8.

Species identification in mixed tuna samples with next-generation sequencing targeting two short cytochrome b gene fragments.

Kappel K, Haase I, Käppel C, Sotelo CG, Schröder U.

Food Chem. 2017 Nov 1;234:212-219. doi: 10.1016/j.foodchem.2017.04.178. Epub 2017 May 2.

PMID:
28551228
9.

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.

Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ.

J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12.

10.

Accelerating the Domestication of New Crops: Feasibility and Approaches.

Østerberg JT, Xiang W, Olsen LI, Edenbrandt AK, Vedel SE, Christiansen A, Landes X, Andersen MM, Pagh P, Sandøe P, Nielsen J, Christensen SB, Thorsen BJ, Kappel K, Gamborg C, Palmgren M.

Trends Plant Sci. 2017 May;22(5):373-384. doi: 10.1016/j.tplants.2017.01.004. Epub 2017 Mar 2. Review.

PMID:
28262427
11.

Is Consent Based on Trust Morally Inferior to Consent Based on Information?

Kongsholm NCH, Kappel K.

Bioethics. 2017 Jul;31(6):432-442. doi: 10.1111/bioe.12342. Epub 2017 Feb 27.

PMID:
28240791
12.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B 2nd, Xiao Y, Xu X, Zhang D, Zok T, Westhof E.

RNA. 2017 May;23(5):655-672. doi: 10.1261/rna.060368.116. Epub 2017 Jan 30.

13.

Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis.

Parks JW, Kappel K, Das R, Stone MD.

RNA. 2017 Feb;23(2):175-188. doi: 10.1261/rna.058743.116. Epub 2016 Nov 15.

14.

Blind tests of RNA nearest-neighbor energy prediction.

Chou FC, Kladwang W, Kappel K, Das R.

Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8430-5. doi: 10.1073/pnas.1523335113. Epub 2016 Jul 8.

15.

Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor.

Kappel K, Miao Y, McCammon JA.

Q Rev Biophys. 2015 Nov;48(4):479-87. doi: 10.1017/S0033583515000153. Review.

16.

Feasibility of new breeding techniques for organic farming.

Andersen MM, Landes X, Xiang W, Anyshchenko A, Falhof J, Østerberg JT, Olsen LI, Edenbrandt AK, Vedel SE, Thorsen BJ, Sandøe P, Gamborg C, Kappel K, Palmgren MG.

Trends Plant Sci. 2015 Jul;20(7):426-34. doi: 10.1016/j.tplants.2015.04.011. Epub 2015 May 28. Review.

PMID:
26027462
17.

Are we ready for back-to-nature crop breeding?

Palmgren MG, Edenbrandt AK, Vedel SE, Andersen MM, Landes X, Østerberg JT, Falhof J, Olsen LI, Christensen SB, Sandøe P, Gamborg C, Kappel K, Thorsen BJ, Pagh P.

Trends Plant Sci. 2015 Mar;20(3):155-64. doi: 10.1016/j.tplants.2014.11.003. Epub 2014 Dec 16. Review.

PMID:
25529373
18.

The binding mechanism, multiple binding modes, and allosteric regulation of Staphylococcus aureus Sortase A probed by molecular dynamics simulations.

Kappel K, Wereszczynski J, Clubb RT, McCammon JA.

Protein Sci. 2012 Dec;21(12):1858-71. doi: 10.1002/pro.2168.

19.

Identifying Fishes through DNA Barcodes and Microarrays.

Kochzius M, Seidel C, Antoniou A, Botla SK, Campo D, Cariani A, Vazquez EG, Hauschild J, Hervet C, Hjörleifsdottir S, Hreggvidsson G, Kappel K, Landi M, Magoulas A, Marteinsson V, Nölte M, Planes S, Tinti F, Turan C, Venugopal MN, Weber H, Blohm D.

PLoS One. 2010 Sep 7;5(9):e12620. doi: 10.1371/journal.pone.0012620.

20.

Pre-trial beliefs in complementary and alternative medicine: whose pre-trial belief should be considered?

Hansen K, Kappel K.

Med Health Care Philos. 2012 Feb;15(1):15-21. doi: 10.1007/s11019-010-9279-7.

PMID:
20820925
21.

The proper role of evidence in complementary/alternative medicine.

Hansen K, Kappel K.

J Med Philos. 2010 Feb;35(1):7-18. doi: 10.1093/jmp/jhp059. Epub 2009 Dec 21.

PMID:
20026527
22.

DNA microarrays for identifying fishes.

Kochzius M, Nölte M, Weber H, Silkenbeumer N, Hjörleifsdottir S, Hreggvidsson GO, Marteinsson V, Kappel K, Planes S, Tinti F, Magoulas A, Garcia Vazquez E, Turan C, Hervet C, Campo Falgueras D, Antoniou A, Landi M, Blohm D.

Mar Biotechnol (NY). 2008 Mar-Apr;10(2):207-17. doi: 10.1007/s10126-007-9068-3. Epub 2008 Feb 13.

23.

[Decisions about life and death. An empirical study of the position of Danish physicians concerning end-of-life decisions].

Norup M, Folker AP, Holtug N, Jensen AB, Kappel K, Nielsen JK.

Nord Med. 1998 Sep;113(7):240-4. Danish.

PMID:
9755623
24.
25.

Experiences and attitudes towards end-of-life decisions amongst Danish physicians.

Folker AP, Holtug N, Jensen AB, Kappel K, Nielsen JK, Norup M.

Bioethics. 1996 Jul;10(3):233-49.

PMID:
11657395
27.

Tick transmission of Borrelia burgdorferi to inbred strains of mice induces an antibody response to P39 but not to outer surface protein A.

Golde WT, Kappel KJ, Dequesne G, Feron C, Plainchamp D, Capiau C, Lobet Y.

Infect Immun. 1994 Jun;62(6):2625-7. Erratum in: Infect Immun 1995 Mar;63(3):1146.

28.

Saving the young before the old -- a reply to John Harris.

Kappel K, Sandøe P.

Bioethics. 1994 Jan;8(1):84-92.

PMID:
11657377
29.

QALYs, age and fairness.

Kappel K, Sandøe P.

Bioethics. 1992 Oct;6(4):297-316.

PMID:
11652092
30.

[Macroscopic and microscopic studies on the uterus masculinus of a European roebuck (Capreolus capreolus L.)].

FRANZKE HJ, KAPPEL K.

Anat Anz. 1961 Dec 5;110:280-5. German. No abstract available.

PMID:
13894734

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