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Items: 12

1.

Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects.

Wipfler B, Letsch H, Frandsen PB, Kapli P, Mayer C, Bartel D, Buckley TR, Donath A, Edgerly-Rooks JS, Fujita M, Liu S, Machida R, Mashimo Y, Misof B, Niehuis O, Peters RS, Petersen M, Podsiadlowski L, Schütte K, Shimizu S, Uchifune T, Wilbrandt J, Yan E, Zhou X, Simon S.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3024-3029. doi: 10.1073/pnas.1817794116. Epub 2019 Jan 14.

2.

Eocene Loranthaceae pollen pushes back divergence ages for major splits in the family.

Grímsson F, Kapli P, Hofmann CC, Zetter R, Grimm GW.

PeerJ. 2017 Jun 7;5:e3373. doi: 10.7717/peerj.3373. eCollection 2017.

3.

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.

Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T.

Bioinformatics. 2017 Jun 1;33(11):1630-1638. doi: 10.1093/bioinformatics/btx025.

4.

A reinvestigation of phylogeny and divergence times of the Ablepharus kitaibelii species complex (Sauria, Scincidae) based on mtDNA and nuDNA genes.

Skourtanioti E, Kapli P, Ilgaz Ç, Kumlutaş Y, Avcı A, Ahmadzadeh F, Crnobrnja-Isailović J, Gherghel I, Lymberakis P, Poulakakis N.

Mol Phylogenet Evol. 2016 Oct;103:199-214. doi: 10.1016/j.ympev.2016.07.005. Epub 2016 Jul 9.

PMID:
27404043
5.

Species relationships and divergence times in beeches: new insights from the inclusion of 53 young and old fossils in a birth-death clock model.

Renner SS, Grimm GW, Kapli P, Denk T.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150135. doi: 10.1098/rstb.2015.0135.

6.

Peeking through the trapdoor: Historical biogeography of the Aegean endemic spider Cyrtocarenum Ausserer, 1871 with an estimation of mtDNA substitution rates for Mygalomorphae.

Kornilios P, Thanou E, Kapli P, Parmakelis A, Chatzaki M.

Mol Phylogenet Evol. 2016 May;98:300-13. doi: 10.1016/j.ympev.2016.01.021. Epub 2016 Feb 11.

PMID:
26876639
7.

INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution".

Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, Kawahara AY, Letsch H, Mayer C, McKenna DD, Meusemann K, Niehuis O, Peters RS, Wiegmann BM, Yeates DK, von Reumont BM, Stamatakis A, Misof B.

Science. 2015 Jul 31;349(6247):487. doi: 10.1126/science.aaa7136.

8.

Using more than the oldest fossils: dating osmundaceae with three Bayesian clock approaches.

Grimm GW, Kapli P, Bomfleur B, McLoughlin S, Renner SS.

Syst Biol. 2015 May;64(3):396-405. doi: 10.1093/sysbio/syu108. Epub 2014 Dec 9.

PMID:
25503771
9.

Phylogenomics resolves the timing and pattern of insect evolution.

Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X.

Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6.

10.

A general species delimitation method with applications to phylogenetic placements.

Zhang J, Kapli P, Pavlidis P, Stamatakis A.

Bioinformatics. 2013 Nov 15;29(22):2869-76. doi: 10.1093/bioinformatics/btt499. Epub 2013 Aug 29.

11.

Molecular phylogeny and historical biogeography of the Anatolian lizard Apathya (Squamata, Lacertidae).

Kapli P, Botoni D, Ilgaz C, Kumlutaş Y, Avcı A, Rastegar-Pouyani N, Fathinia B, Lymberakis P, Ahmadzadeh F, Poulakakis N.

Mol Phylogenet Evol. 2013 Mar;66(3):992-1001. doi: 10.1016/j.ympev.2012.12.002. Epub 2012 Dec 20. Erratum in: Mol Phylogenet Evol. 2013 Oct;69(1):308-9.

PMID:
23261710
12.

Molecular phylogeny of three Mesalina (Reptilia: Lacertidae) species (M. guttulata, M. brevirostris and M. bahaeldini) from North Africa and the Middle East: another case of paraphyly?

Kapli P, Lymberakis P, Poulakakis N, Mantziou G, Parmakelis A, Mylonas M.

Mol Phylogenet Evol. 2008 Oct;49(1):102-10. doi: 10.1016/j.ympev.2008.06.016. Epub 2008 Jul 2.

PMID:
18644456

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