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Items: 22


Submegabase copy number variations arise during cerebral cortical neurogenesis as revealed by single-cell whole-genome sequencing.

Rohrback S, April C, Kaper F, Rivera RR, Liu CS, Siddoway B, Chun J.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10804-10809. doi: 10.1073/pnas.1812702115. Epub 2018 Sep 27. Erratum in: Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11428.


Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Lake BB, Ai R, Kaeser GE, Salathia NS, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K.

Science. 2016 Jun 24;352(6293):1586-90. doi: 10.1126/science.aaf1204.


Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis.

Fan J, Salathia N, Liu R, Kaeser GE, Yung YC, Herman JL, Kaper F, Fan JB, Zhang K, Chun J, Kharchenko PV.

Nat Methods. 2016 Mar;13(3):241-4. doi: 10.1038/nmeth.3734. Epub 2016 Jan 18.


Altered levels of mitochondrial DNA are associated with female age, aneuploidy, and provide an independent measure of embryonic implantation potential.

Fragouli E, Spath K, Alfarawati S, Kaper F, Craig A, Michel CE, Kokocinski F, Cohen J, Munne S, Wells D.

PLoS Genet. 2015 Jun 3;11(6):e1005241. doi: 10.1371/journal.pgen.1005241. eCollection 2015 Jun.


Whole-genome haplotyping by dilution, amplification, and sequencing.

Kaper F, Swamy S, Klotzle B, Munchel S, Cottrell J, Bibikova M, Chuang HY, Kruglyak S, Ronaghi M, Eberle MA, Fan JB.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5552-7. doi: 10.1073/pnas.1218696110. Epub 2013 Mar 18.


Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA.

Forshew T, Murtaza M, Parkinson C, Gale D, Tsui DW, Kaper F, Dawson SJ, Piskorz AM, Jimenez-Linan M, Bentley D, Hadfield J, May AP, Caldas C, Brenton JD, Rosenfeld N.

Sci Transl Med. 2012 May 30;4(136):136ra68. doi: 10.1126/scitranslmed.3003726.


Highly parallel genome-wide expression analysis of single mammalian cells.

Fan JB, Chen J, April CS, Fisher JS, Klotzle B, Bibikova M, Kaper F, Ronaghi M, Linnarsson S, Ota T, Chien J, Laurent LC, Loring JF, Nisperos SV, Chen GY, Zhong JF.

PLoS One. 2012;7(2):e30794. doi: 10.1371/journal.pone.0030794. Epub 2012 Feb 8. Erratum in: PLoS One. 2012;7(2). doi: 10.1371/annotation/3f0ddf41-2e7a-4b56-93c2-2731f2890b19. Loring, Jeanne F [added].


Quantitative phenotyping via deep barcode sequencing.

Smith AM, Heisler LE, Mellor J, Kaper F, Thompson MJ, Chee M, Roth FP, Giaever G, Nislow C.

Genome Res. 2009 Oct;19(10):1836-42. doi: 10.1101/gr.093955.109. Epub 2009 Jul 21.


Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers.

Yan Z, Costanzo M, Heisler LE, Paw J, Kaper F, Andrews BJ, Boone C, Giaever G, Nislow C.

Nat Methods. 2008 Aug;5(8):719-25. doi: 10.1038/nmeth.1231. Epub 2008 Jul 11.


Connective tissue growth factor-specific monoclonal antibody therapy inhibits pancreatic tumor growth and metastasis.

Dornhöfer N, Spong S, Bennewith K, Salim A, Klaus S, Kambham N, Wong C, Kaper F, Sutphin P, Nacamuli R, Höckel M, Le Q, Longaker M, Yang G, Koong A, Giaccia A.

Cancer Res. 2006 Jun 1;66(11):5816-27. Erratum in: Cancer Res. 2006 Aug 1;66(15):7832. Nacalumi, Rendall [corrected to Nacamuli, Randall].


Anoxia is necessary for tumor cell toxicity caused by a low-oxygen environment.

Papandreou I, Krishna C, Kaper F, Cai D, Giaccia AJ, Denko NC.

Cancer Res. 2005 Apr 15;65(8):3171-8.


Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum.

Chalvet F, Grimaldi C, Kaper F, Langin T, Daboussi MJ.

Mol Biol Evol. 2003 Aug;20(8):1362-75. Epub 2003 May 30.


Regulation of hypoxia-inducible factor 1alpha expression and function by the mammalian target of rapamycin.

Hudson CC, Liu M, Chiang GG, Otterness DM, Loomis DC, Kaper F, Giaccia AJ, Abraham RT.

Mol Cell Biol. 2002 Oct;22(20):7004-14.


Effects of perillyl alcohol on melanoma in the TPras mouse model.

Lluria-Prevatt M, Morreale J, Gregus J, Alberts DS, Kaper F, Giaccia A, Powell MB.

Cancer Epidemiol Biomarkers Prev. 2002 Jun;11(6):573-9.


Regulation of insulin-like growth factor-binding protein 1 by hypoxia and 3',5'-cyclic adenosine monophosphate is additive in HepG2 cells.

Sugawara J, Tazuke SI, Suen LF, Powell DR, Kaper F, Giaccia AJ, Giudice LC.

J Clin Endocrinol Metab. 2000 Oct;85(10):3821-7.


The life cycles of the temperate lactococcal bacteriophage phiLC3 monitored by a quantitative PCR method.

Lunde M, Blatny JM, Kaper F, Nes IF, Lillehaug D.

FEMS Microbiol Lett. 2000 Nov 1;192(1):119-24.


Regulation of insulin-like growth factor-binding protein-1 by nitric oxide under hypoxic conditions.

Sugawara J, Suh DS, Faessen GH, Suen LF, Shibata T, Kaper F, Giaccia AJ, Giudice LC.

J Clin Endocrinol Metab. 2000 Aug;85(8):2714-21.


Genome organization in Fusarium oxysporum: clusters of class II transposons.

Hua-Van A, Davière JM, Kaper F, Langin T, Daboussi MJ.

Curr Genet. 2000 May;37(5):339-47.


Loss of PTEN facilitates HIF-1-mediated gene expression.

Zundel W, Schindler C, Haas-Kogan D, Koong A, Kaper F, Chen E, Gottschalk AR, Ryan HE, Johnson RS, Jefferson AB, Stokoe D, Giaccia AJ.

Genes Dev. 2000 Feb 15;14(4):391-6.


Transposition of the autonomous Fot1 element in the filamentous fungus Fusarium oxysporum.

Migheli Q, Laugé R, Davière JM, Gerlinger C, Kaper F, Langin T, Daboussi MJ.

Genetics. 1999 Mar;151(3):1005-13.


Identification of fifteen novel mutations in the tissue-nonspecific alkaline phosphatase (TNSALP) gene in European patients with severe hypophosphatasia.

Mornet E, Taillandier A, Peyramaure S, Kaper F, Muller F, Brenner R, Bussière P, Freisinger P, Godard J, Le Merrer M, Oury JF, Plauchu H, Puddu R, Rival JM, Superti-Furga A, Touraine RL, Serre JL, Simon-Bouy B.

Eur J Hum Genet. 1998 Jul-Aug;6(4):308-14.

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