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Items: 30

1.

Transcriptional Profiling the 150 kb Linear Megaplasmid of Borrelia turicatae Suggests a Role in Vector Colonization and Initiating Mammalian Infection.

Wilder HK, Raffel SJ, Barbour AG, Porcella SF, Sturdevant DE, Vaisvil B, Kapatral V, Schmitt DP, Schwan TG, Lopez JE.

PLoS One. 2016 Feb 4;11(2):e0147707. doi: 10.1371/journal.pone.0147707. eCollection 2016.

2.

The genome of Shigella dysenteriae strain Sd1617 comparison to representative strains in evaluating pathogenesis.

Vongsawan AA, Kapatral V, Vaisvil B, Burd H, Serichantalergs O, Venkatesan MM, Mason CJ.

FEMS Microbiol Lett. 2015 Mar;362(5). pii: fnv011. doi: 10.1093/femsle/fnv011. Epub 2015 Jan 28.

3.

Complete Genome Sequence of Flavobacterium psychrophilum Strain CSF259-93, Used To Select Rainbow Trout for Increased Genetic Resistance against Bacterial Cold Water Disease.

Wiens GD, LaPatra SE, Welch TJ, Rexroad C 3rd, Call DR, Cain KD, LaFrentz BR, Vaisvil B, Schmitt DP, Kapatral V.

Genome Announc. 2014 Sep 18;2(5). pii: e00889-14. doi: 10.1128/genomeA.00889-14.

4.

Draft Genome Sequence of a New Homofermentative, Lactic Acid-Producing Enterococcus faecalis Isolate, CBRD01.

Christopher LP, Kapatral V, Vaisvil B, Emel G, Deveaux LC.

Genome Announc. 2014 Mar 27;2(2). pii: e00147-14. doi: 10.1128/genomeA.00147-14.

5.

Metabolic network analysis-based identification of antimicrobial drug targets in category A bioterrorism agents.

Ahn YY, Lee DS, Burd H, Blank W, Kapatral V.

PLoS One. 2014 Jan 15;9(1):e85195. doi: 10.1371/journal.pone.0085195. eCollection 2014.

6.

The genetic basis of laboratory adaptation in Caulobacter crescentus.

Marks ME, Castro-Rojas CM, Teiling C, Du L, Kapatral V, Walunas TL, Crosson S.

J Bacteriol. 2010 Jul;192(14):3678-88. doi: 10.1128/JB.00255-10. Epub 2010 May 14.

7.

Blueprint for antimicrobial hit discovery targeting metabolic networks.

Shen Y, Liu J, Estiu G, Isin B, Ahn YY, Lee DS, Barabási AL, Kapatral V, Wiest O, Oltvai ZN.

Proc Natl Acad Sci U S A. 2010 Jan 19;107(3):1082-7. doi: 10.1073/pnas.0909181107. Epub 2010 Jan 5.

8.

Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets.

Lee DS, Burd H, Liu J, Almaas E, Wiest O, Barabási AL, Oltvai ZN, Kapatral V.

J Bacteriol. 2009 Jun;191(12):4015-24. doi: 10.1128/JB.01743-08. Epub 2009 Apr 17.

9.

The Rhodobacter capsulatus genome.

Haselkorn R, Lapidus A, Kogan Y, Vlcek C, Paces J, Paces V, Ulbrich P, Pecenkova T, Rebrekov D, Milgram A, Mazur M, Cox R, Kyrpides N, Ivanova N, Kapatral V, Los T, Lykidis A, Mikhailova N, Reznik G, Vasieva O, Fonstein M.

Photosynth Res. 2001;70(1):43-52.

PMID:
16228361
10.

Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis.

Anderson I, Sorokin A, Kapatral V, Reznik G, Bhattacharya A, Mikhailova N, Burd H, Joukov V, Kaznadzey D, Walunas T, Markd'Souza, Larsen N, Pusch G, Liolios K, Grechkin Y, Lapidus A, Goltsman E, Chu L, Fonstein M, Ehrlich SD, Overbeek R, Kyrpides N, Ivanova N.

FEMS Microbiol Lett. 2005 Sep 15;250(2):175-84.

11.

The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.

Foster J, Ganatra M, Kamal I, Ware J, Makarova K, Ivanova N, Bhattacharyya A, Kapatral V, Kumar S, Posfai J, Vincze T, Ingram J, Moran L, Lapidus A, Omelchenko M, Kyrpides N, Ghedin E, Wang S, Goltsman E, Joukov V, Ostrovskaya O, Tsukerman K, Mazur M, Comb D, Koonin E, Slatko B.

PLoS Biol. 2005 Apr;3(4):e121. Epub 2005 Mar 29.

12.

Characterization of a recombinant Yersinia enterocolitica lipoprotein; implications for its role in autoimmune response against thyrotropin receptor.

Gangi E, Kapatral V, El-Azami El-Idrissi M, Martinez O, Prabhakar BS.

Autoimmunity. 2004 Sep-Nov;37(6-7):515-20.

PMID:
15621579
13.

Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate.

Kapatral V, Campbell JW, Minnich SA, Thomson NR, Matsumura P, Prüss BM.

Microbiology. 2004 Jul;150(Pt 7):2289-300.

PMID:
15256571
14.

Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.

Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL.

J Bacteriol. 2003 Oct;185(19):5673-84.

15.

Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586.

Kapatral V, Ivanova N, Anderson I, Reznik G, Bhattacharyya A, Gardner WL, Mikhailova N, Lapidus A, Larsen N, D'Souza M, Walunas T, Haselkorn R, Overbeek R, Kyrpides N.

Genome Res. 2003 Jun;13(6A):1180-9.

16.

Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.

Ivanova N, Sorokin A, Anderson I, Galleron N, Candelon B, Kapatral V, Bhattacharyya A, Reznik G, Mikhailova N, Lapidus A, Chu L, Mazur M, Goltsman E, Larsen N, D'Souza M, Walunas T, Grechkin Y, Pusch G, Haselkorn R, Fonstein M, Ehrlich SD, Overbeek R, Kyrpides N.

Nature. 2003 May 1;423(6935):87-91.

PMID:
12721630
17.

The ERGO genome analysis and discovery system.

Overbeek R, Larsen N, Walunas T, D'Souza M, Pusch G, Selkov E Jr, Liolios K, Joukov V, Kaznadzey D, Anderson I, Bhattacharyya A, Burd H, Gardner W, Hanke P, Kapatral V, Mikhailova N, Vasieva O, Osterman A, Vonstein V, Fonstein M, Ivanova N, Kyrpides N.

Nucleic Acids Res. 2003 Jan 1;31(1):164-71.

18.

The genome of Brucella melitensis.

DelVecchio VG, Kapatral V, Elzer P, Patra G, Mujer CV.

Vet Microbiol. 2002 Dec 20;90(1-4):587-92. Review.

PMID:
12414174
19.

Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights.

Bhattacharyya A, Stilwagen S, Reznik G, Feil H, Feil WS, Anderson I, Bernal A, D'Souza M, Ivanova N, Kapatral V, Larsen N, Los T, Lykidis A, Selkov E Jr, Walunas TL, Purcell A, Edwards RA, Hawkins T, Haselkorn R, Overbeek R, Kyrpides NC, Predki PF.

Genome Res. 2002 Oct;12(10):1556-63.

20.

Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains.

Bhattacharyya A, Stilwagen S, Ivanova N, D'Souza M, Bernal A, Lykidis A, Kapatral V, Anderson I, Larsen N, Los T, Reznik G, Selkov E Jr, Walunas TL, Feil H, Feil WS, Purcell A, Lassez JL, Hawkins TL, Haselkorn R, Overbeek R, Predki PF, Kyrpides NC.

Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12403-8. Epub 2002 Aug 30.

21.

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.

Kapatral V, Anderson I, Ivanova N, Reznik G, Los T, Lykidis A, Bhattacharyya A, Bartman A, Gardner W, Grechkin G, Zhu L, Vasieva O, Chu L, Kogan Y, Chaga O, Goltsman E, Bernal A, Larsen N, D'Souza M, Walunas T, Pusch G, Haselkorn R, Fonstein M, Kyrpides N, Overbeek R.

J Bacteriol. 2002 Apr;184(7):2005-18.

22.

The genome sequence of the facultative intracellular pathogen Brucella melitensis.

DelVecchio VG, Kapatral V, Redkar RJ, Patra G, Mujer C, Los T, Ivanova N, Anderson I, Bhattacharyya A, Lykidis A, Reznik G, Jablonski L, Larsen N, D'Souza M, Bernal A, Mazur M, Goltsman E, Selkov E, Elzer PH, Hagius S, O'Callaghan D, Letesson JJ, Haselkorn R, Kyrpides N, Overbeek R.

Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):443-8. Epub 2001 Dec 26.

24.
25.

P2Z-Independent and P2Z receptor-mediated macrophage killing by Pseudomonas aeruginosa isolated from cystic fibrosis patients.

Zaborina O, Misra N, Kostal J, Kamath S, Kapatral V, El-Idrissi ME, Prabhakar BS, Chakrabarty AM.

Infect Immun. 1999 Oct;67(10):5231-42.

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29.

Temperature-dependent regulation of Yersinia enterocolitica Class III flagellar genes.

Kapatral V, Olson JW, Pepe JC, Miller VL, Minnich SA.

Mol Microbiol. 1996 Mar;19(5):1061-71.

PMID:
8830263
30.

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