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Items: 1 to 50 of 100

1.

Characteristics of physiology of and genomic mutations in aggregation-enhanced mutants of Methanothermobacter sp. CaT2.

Sumikawa K, Kosaka T, Udo K, Kanesaki Y, Yoshikawa H, Yamada M.

Biosci Biotechnol Biochem. 2020 Jan 3:1-9. doi: 10.1080/09168451.2019.1709790. [Epub ahead of print]

PMID:
31900061
2.

Responses of unicellular predators to cope with the phototoxicity of photosynthetic prey.

Uzuka A, Kobayashi Y, Onuma R, Hirooka S, Kanesaki Y, Yoshikawa H, Fujiwara T, Miyagishima SY.

Nat Commun. 2019 Dec 6;10(1):5606. doi: 10.1038/s41467-019-13568-6.

3.

Genes regulated by branched-chain polyamine in the hyperthermophilic archaeon Thermococcus kodakarensis.

Fukuda W, Yamori Y, Hamakawa M, Osaki M, Fukuda M, Hidese R, Kanesaki Y, Okamoto-Kainuma A, Kato S, Fujiwara S.

Amino Acids. 2019 Oct 16. doi: 10.1007/s00726-019-02793-4. [Epub ahead of print]

PMID:
31621031
4.

Interplay and Targetome of the Two Conserved Cyanobacterial sRNAs Yfr1 and Yfr2 in Prochlorococcus MED4.

Lambrecht SJ, Kanesaki Y, Fuss J, Huettel B, Reinhardt R, Steglich C.

Sci Rep. 2019 Oct 4;9(1):14331. doi: 10.1038/s41598-019-49881-9.

5.

Pseudofructophilic Leuconostoc citreum Strain F192-5, Isolated from Satsuma Mandarin Peel.

Maeno S, Tanizawa Y, Kajikawa A, Kanesaki Y, Kubota E, Arita M, Dicks L, Endo A.

Appl Environ Microbiol. 2019 Oct 1;85(20). pii: e01077-19. doi: 10.1128/AEM.01077-19. Print 2019 Oct 15.

PMID:
31399409
6.

Free flavins accelerate release of ferrous iron from iron storage proteins by both free flavin-dependent and -independent ferric reductases in Escherichia coli.

Satoh J, Kimata S, Nakamoto S, Ishii T, Tanaka E, Yumoto S, Takeda K, Yoshimura E, Kanesaki Y, Ishige T, Tanaka K, Abe A, Kawasaki S, Niimura Y.

J Gen Appl Microbiol. 2019 Jul 5. doi: 10.2323/jgam.2019.03.001. [Epub ahead of print]

7.

Draft Genome Sequence of Zygosaccharomyces mellis CA-7, Isolated from Honey.

Shiwa Y, Kanesaki Y, Ishige T, Mura K, Hori T, Tamura T.

Microbiol Resour Announc. 2019 Jun 27;8(26). pii: e00449-19. doi: 10.1128/MRA.00449-19.

8.

Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae.

Fujiwara T, Hirooka S, Mukai M, Ohbayashi R, Kanesaki Y, Watanabe S, Miyagishima SY.

Plant Direct. 2019 Apr 8;3(4):e00134. doi: 10.1002/pld3.134. eCollection 2019 Apr.

9.

Correction: Capacity for survival in global warming: Adaptation of mesophiles to the temperature upper limit.

Kosaka T, Nakajima Y, Ishii A, Yamashita M, Yoshida S, Murata M, Kato K, Shiromaru Y, Kato S, Kanesaki Y, Yoshikawa H, Matsutani M, Thanonkeo P, Yamada M.

PLoS One. 2019 Jun 20;14(6):e0218985. doi: 10.1371/journal.pone.0218985. eCollection 2019.

10.

Sulfur-Containing Carotenoids from A Marine Coral Symbiont Erythrobacter flavus Strain KJ5.

Setiyono E; Heriyanto, Pringgenies D, Shioi Y, Kanesaki Y, Awai K, Brotosudarmo THP.

Mar Drugs. 2019 Jun 11;17(6). pii: E349. doi: 10.3390/md17060349.

11.

Ubr1p-Cup9p-Ptr2p pathway involves in the sensitivity to readthrough compounds negamycin derivatives in budding yeast.

Hamada K, Naito A, Hamaguchi Y, Kanesaki Y, Kasahara K, Taguchi A, Omura N, Hayashi Y, Usui T.

Biosci Biotechnol Biochem. 2019 Oct;83(10):1889-1892. doi: 10.1080/09168451.2019.1625263. Epub 2019 Jun 4.

PMID:
31159660
12.

Complete Genome Sequence of Enterococcus faecium QU50, a Thermophilic Lactic Acid Bacterium Capable of Metabolizing Xylose.

Abe K, Kanesaki Y, Abdel-Rahman MA, Watanabe S, Zendo T, Chibazakura T, Shimizu-Kadota M, Sonomoto K, Yoshikawa H.

Microbiol Resour Announc. 2019 May 23;8(21). pii: e00413-19. doi: 10.1128/MRA.00413-19.

13.

Coordination of Polyploid Chromosome Replication with Cell Size and Growth in a Cyanobacterium.

Ohbayashi R, Nakamachi A, Hatakeyama TS, Watanabe S, Kanesaki Y, Chibazakura T, Yoshikawa H, Miyagishima SY.

mBio. 2019 Apr 23;10(2). pii: e00510-19. doi: 10.1128/mBio.00510-19.

14.

Complete Genome Sequence of the Marine Bacterium Erythrobacter flavus Strain KJ5.

Kanesaki Y, Setiyono E, Pringgenies D, Moriuchi R, Brotosudarmo THP, Awai K.

Microbiol Resour Announc. 2019 Mar 28;8(13). pii: e00140-19. doi: 10.1128/MRA.00140-19.

16.

Identification of metabolic engineering targets for improving glycerol assimilation ability of Saccharomyces cerevisiae based on adaptive laboratory evolution and transcriptome analysis.

Kawai K, Kanesaki Y, Yoshikawa H, Hirasawa T.

J Biosci Bioeng. 2019 Aug;128(2):162-169. doi: 10.1016/j.jbiosc.2019.02.001. Epub 2019 Feb 22.

PMID:
30803782
17.

Algal Protein Kinase, Triacylglycerol Accumulation Regulator 1, Modulates Cell Viability and Gametogenesis in Carbon/Nitrogen-Imbalanced Conditions.

Shinkawa H, Kajikawa M, Nomura Y, Ogura M, Sawaragi Y, Yamano T, Nakagami H, Sugiyama N, Ishihama Y, Kanesaki Y, Yoshikawa H, Fukuzawa H.

Plant Cell Physiol. 2019 Apr 1;60(4):916-930. doi: 10.1093/pcp/pcz010.

PMID:
30668822
18.

Comparative genome analysis of Aspergillus flavus clinically isolated in Japan.

Toyotome T, Hamada S, Yamaguchi S, Takahashi H, Kondoh D, Takino M, Kanesaki Y, Kamei K.

DNA Res. 2019 Feb 1;26(1):95-103. doi: 10.1093/dnares/dsy041.

19.

Identification of the novel hcbB operon catalyzing the dechlorination of pentachlorophenol in the Gram-positive bacterium Nocardioides sp. strain PD653.

Ito K, Takagi K, Matsushima Y, Iwasaki A, Tanaka N, Kanesaki Y, Martin-Laurent Martin-Laurent FF, Igimi S.

J Pestic Sci. 2018 May 20;43(2):124-131. doi: 10.1584/jpestics.D17-089.

20.

Newly Identified Nucleoid-Associated-Like Protein YlxR Regulates Metabolic Gene Expression in Bacillus subtilis.

Ogura M, Kanesaki Y.

mSphere. 2018 Oct 24;3(5). pii: e00501-18. doi: 10.1128/mSphere.00501-18.

21.

Actinomyces denticolens as a causative agent of actinomycosis in animals.

Murakami S, Kobayashi T, Sekigawa Y, Torii Y, Kanesaki Y, Ishige T, Yokoyama E, Ishiwata H, Hamada M, Tamura T.

J Vet Med Sci. 2018 Nov 9;80(11):1650-1656. doi: 10.1292/jvms.18-0207. Epub 2018 Sep 14.

22.

Physiological properties and genetic analysis related to exopolysaccharide (EPS) production in the fresh-water unicellular cyanobacterium Aphanothece sacrum (Suizenji Nori).

Ohki K, Kanesaki Y, Suzuki N, Okajima M, Kaneko T, Yoshikawa S.

J Gen Appl Microbiol. 2019 Mar 8;65(1):39-46. doi: 10.2323/jgam.2018.04.004. Epub 2018 Jul 12.

23.

Linear Regression Links Transcriptomic Data and Cellular Raman Spectra.

Kobayashi-Kirschvink KJ, Nakaoka H, Oda A, Kamei KF, Nosho K, Fukushima H, Kanesaki Y, Yajima S, Masaki H, Ohta K, Wakamoto Y.

Cell Syst. 2018 Jul 25;7(1):104-117.e4. doi: 10.1016/j.cels.2018.05.015. Epub 2018 Jun 20.

24.

Intracellular free flavin and its associated enzymes participate in oxygen and iron metabolism in Amphibacillus xylanus lacking a respiratory chain.

Kimata S, Mochizuki D, Satoh J, Kitano K, Kanesaki Y, Takeda K, Abe A, Kawasaki S, Niimura Y.

FEBS Open Bio. 2018 May 9;8(6):947-961. doi: 10.1002/2211-5463.12425. eCollection 2018 Jun.

25.

Characterization of mycosporine-like amino acids in the cyanobacterium Nostoc verrucosum.

Inoue-Sakamoto K, Nazifi E, Tsuji C, Asano T, Nishiuchi T, Matsugo S, Ishihara K, Kanesaki Y, Yoshikawa H, Sakamoto T.

J Gen Appl Microbiol. 2018 Nov 9;64(5):203-211. doi: 10.2323/jgam.2017.12.003. Epub 2018 Apr 30.

26.
27.

Draft Genome Sequence of Bacillus licheniformis Heshi-B2, Isolated from Fermented Rice Bran in a Japanese Fermented Seafood Dish.

Kanesaki Y, Kubota E, Ohtake R, Higashi Y, Nagaoka J, Suzuki T, Akuzawa S.

Genome Announc. 2018 Mar 8;6(10). pii: e00118-18. doi: 10.1128/genomeA.00118-18.

28.

Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta.

Kanesaki Y, Hirose M, Hirose Y, Fujisawa T, Nakamura Y, Watanabe S, Matsunaga S, Uchida H, Murakami A.

Genome Announc. 2018 Feb 15;6(7). pii: e00021-18. doi: 10.1128/genomeA.00021-18.

29.

Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-3.

Tajima N, Kanesaki Y, Sato S, Yoshikawa H, Maruyama F, Kurokawa K, Ohta H, Nishizawa T, Asayama M, Sato N.

Genome Announc. 2018 Feb 8;6(6). pii: e01608-17. doi: 10.1128/genomeA.01608-17.

30.

In vitro and in silico characterisation of Lactobacillus paraplantarum D2-1, a starter culture for soymilk fermentation.

Endo A, Sasaki F, Maeno S, Kanesaki Y, Hamaguchi Y, Torres GA, Tomita S, Nakagawa J.

Int J Food Sci Nutr. 2018 Nov;69(7):857-869. doi: 10.1080/09637486.2017.1422701. Epub 2018 Jan 10.

PMID:
29318897
31.

Mutations responsible for alcohol tolerance in the mutant of Synechococcus elongatus PCC 7942 (SY1043) obtained by single-cell screening system.

Hirokawa Y, Kanesaki Y, Arai S, Saruta F, Hayashihara K, Murakami A, Shimizu K, Honda H, Yoshikawa H, Hanai T.

J Biosci Bioeng. 2018 May;125(5):572-577. doi: 10.1016/j.jbiosc.2017.11.012.

PMID:
29269101
32.

Erratum for Ito et al., "Identification of the hcb Gene Operon Involved in Catalyzing Aerobic Hexachlorobenzene Dechlorination in Nocardioides sp. Strain PD653".

Ito K, Takagi K, Iwasaki A, Tanaka N, Kanesaki Y, Martin-Laurent F, Igimi S.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e02257-17. doi: 10.1128/AEM.02257-17. Print 2018 Jan 1. No abstract available.

33.

ParA-like protein influences the distribution of multi-copy chromosomes in cyanobacterium Synechococcus elongatus PCC 7942.

Watanabe S, Noda A, Ohbayashi R, Uchioke K, Kurihara A, Nakatake S, Morioka S, Kanesaki Y, Chibazakura T, Yoshikawa H.

Microbiology. 2018 Jan;164(1):45-56. doi: 10.1099/mic.0.000577. Epub 2017 Nov 21.

PMID:
29165230
34.

Acidophilic green algal genome provides insights into adaptation to an acidic environment.

Hirooka S, Hirose Y, Kanesaki Y, Higuchi S, Fujiwara T, Onuma R, Era A, Ohbayashi R, Uzuka A, Nozaki H, Yoshikawa H, Miyagishima SY.

Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8304-E8313. doi: 10.1073/pnas.1707072114. Epub 2017 Sep 11.

35.

Identification of the hcb Gene Operon Involved in Catalyzing Aerobic Hexachlorobenzene Dechlorination in Nocardioides sp. Strain PD653.

Ito K, Takagi K, Iwasaki A, Tanaka N, Kanesaki Y, Martin-Laurent F, Igimi S.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e00824-17. doi: 10.1128/AEM.00824-17. Print 2017 Oct 1. Erratum in: Appl Environ Microbiol. 2017 Dec 15;84(1):.

36.

Surface Sensing for Paenibacillus sp. NAIST15-1 Flagellar Gene Expression on Solid Medium.

Kobayashi K, Kanesaki Y, Yoshikawa H.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00585-17. doi: 10.1128/AEM.00585-17. Print 2017 Aug 1.

37.

Complete Genome Sequence of a Coastal Cyanobacterium, Synechococcus sp. Strain NIES-970.

Shimura Y, Hirose Y, Misawa N, Wakazuki S, Fujisawa T, Nakamura Y, Kanesaki Y, Yamaguchi H, Kawachi M.

Genome Announc. 2017 Apr 6;5(14). pii: e00139-17. doi: 10.1128/genomeA.00139-17.

38.

Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T.

Kanesaki Y, Ishige T, Sekigawa Y, Kobayashi T, Torii Y, Yokoyama E, Ishiwata H, Hamada M, Tamura T, Azuma R, Murakami S.

Genome Announc. 2017 Apr 6;5(14). pii: e00126-17. doi: 10.1128/genomeA.00126-17.

39.

Conserved two-component Hik34-Rre1 module directly activates heat-stress inducible transcription of major chaperone and other genes in Synechococcus elongatus PCC 7942.

Kobayashi I, Watanabe S, Kanesaki Y, Shimada T, Yoshikawa H, Tanaka K.

Mol Microbiol. 2017 Apr;104(2):260-277. doi: 10.1111/mmi.13624. Epub 2017 Feb 15.

40.

Genome Mining of Amino Group Carrier Protein-Mediated Machinery: Discovery and Biosynthetic Characterization of a Natural Product with Unique Hydrazone Unit.

Matsuda K, Hasebe F, Shiwa Y, Kanesaki Y, Tomita T, Yoshikawa H, Shin-Ya K, Kuzuyama T, Nishiyama M.

ACS Chem Biol. 2017 Jan 20;12(1):124-131. doi: 10.1021/acschembio.6b00818. Epub 2016 Nov 30.

PMID:
28103675
41.

CyanoBase: a large-scale update on its 20th anniversary.

Fujisawa T, Narikawa R, Maeda SI, Watanabe S, Kanesaki Y, Kobayashi K, Nomata J, Hanaoka M, Watanabe M, Ehira S, Suzuki E, Awai K, Nakamura Y.

Nucleic Acids Res. 2017 Jan 4;45(D1):D551-D554. doi: 10.1093/nar/gkw1131. Epub 2016 Nov 29.

42.

Variety of DNA Replication Activity Among Cyanobacteria Correlates with Distinct Respiration Activity in the Dark.

Ohbayashi R, Yamamoto JY, Watanabe S, Kanesaki Y, Chibazakura T, Miyagishima SY, Yoshikawa H.

Plant Cell Physiol. 2017 Feb 1;58(2):279-286. doi: 10.1093/pcp/pcw186.

PMID:
27837093
43.

Chloroplast-mediated regulation of CO2-concentrating mechanism by Ca2+-binding protein CAS in the green alga Chlamydomonas reinhardtii.

Wang L, Yamano T, Takane S, Niikawa Y, Toyokawa C, Ozawa SI, Tokutsu R, Takahashi Y, Minagawa J, Kanesaki Y, Yoshikawa H, Fukuzawa H.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12586-12591. Epub 2016 Oct 17.

44.

Draft Genome Sequences of Bradyrhizobium elkanii Strains BLY3-8 and BLY6-1, Which Are Incompatible with Rj3 Genotype Soybean Cultivars.

Zaw Htwe A, Kanesaki Y, Yoshikawa H, Tsurumaru H, Yamakawa T.

Genome Announc. 2016 Oct 27;4(5). pii: e01169-16. doi: 10.1128/genomeA.01169-16.

45.

Genomic characterization of a fructophilic bee symbiont Lactobacillus kunkeei reveals its niche-specific adaptation.

Maeno S, Tanizawa Y, Kanesaki Y, Kubota E, Kumar H, Dicks L, Salminen S, Nakagawa J, Arita M, Endo A.

Syst Appl Microbiol. 2016 Dec;39(8):516-526. doi: 10.1016/j.syapm.2016.09.006. Epub 2016 Oct 13.

PMID:
27776911
46.

Genetic Analysis of Collective Motility of Paenibacillus sp. NAIST15-1.

Kobayashi K, Kanesaki Y, Yoshikawa H.

PLoS Genet. 2016 Oct 20;12(10):e1006387. doi: 10.1371/journal.pgen.1006387. eCollection 2016 Oct.

47.

Draft Genome Sequence of Microbacterium sp. Strain HM58-2, Which Hydrolyzes Acylhydrazides.

Akiyama T, Ishige T, Kanesaki Y, Ito S, Oinuma K, Takaya N, Sasaki Y, Yajima S.

Genome Announc. 2016 Jun 16;4(3). pii: e00554-16. doi: 10.1128/genomeA.00554-16.

48.

Draft Genome Sequence of Paenibacillus amylolyticus Heshi-A3, Isolated from Fermented Rice Bran in a Japanese Fermented Seafood Dish.

Akuzawa S, Nagaoka J, Kanekatsu M, Kubota E, Ohtake R, Suzuki T, Kanesaki Y.

Genome Announc. 2016 Mar 31;4(2). pii: e00218-16. doi: 10.1128/genomeA.00218-16.

49.

Identification of the Three Genes Involved in Controlling Production of a Phytotoxin Tropolone in Burkholderia plantarii.

Miwa S, Kihira E, Yoshioka A, Nakasone K, Okamoto S, Hatano M, Igarashi M, Eguchi Y, Kato A, Ichikawa N, Sekine M, Fujita N, Kanesaki Y, Yoshikawa H, Utsumi R.

J Bacteriol. 2016 May 13;198(11):1604-1609. doi: 10.1128/JB.01028-15. Print 2016 Jun 1.

50.

Complete Genome Sequence of Cyanobacterium Leptolyngbya sp. NIES-3755.

Hirose Y, Fujisawa T, Ohtsubo Y, Katayama M, Misawa N, Wakazuki S, Shimura Y, Nakamura Y, Kawachi M, Yoshikawa H, Eki T, Kanesaki Y.

Genome Announc. 2016 Mar 17;4(2). pii: e00090-16. doi: 10.1128/genomeA.00090-16.

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