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A taxonomically broad metagenomic survey of 339 species spanning 57 families suggests cystobasidiomycete yeasts are not ubiquitous across all lichens.

Lendemer JC, Keepers KG, Tripp EA, Pogoda CS, McCain CM, Kane NC.

Am J Bot. 2019 Aug;106(8):1090-1095. doi: 10.1002/ajb2.1339. Epub 2019 Aug 9.


Extensive chloroplast genome rearrangement amongst three closely related Halamphora spp. (Bacillariophyceae), and evidence for rapid evolution as compared to land plants.

Hamsher SE, Keepers KG, Pogoda CS, Stepanek JG, Kane NC, Kociolek JP.

PLoS One. 2019 Jul 3;14(7):e0217824. doi: 10.1371/journal.pone.0217824. eCollection 2019.


Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria.

Pogoda CS, Keepers KG, Nadiadi AY, Bailey DW, Lendemer JC, Tripp EA, Kane NC.

Ecol Evol. 2019 Mar 21;9(7):4245-4263. doi: 10.1002/ece3.5056. eCollection 2019 Apr.


Stochastic processes drive rapid genomic divergence during experimental range expansions.

Weiss-Lehman C, Tittes S, Kane NC, Hufbauer RA, Melbourne BA.

Proc Biol Sci. 2019 Apr 10;286(1900):20190231. doi: 10.1098/rspb.2019.0231.


Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance.

Hübner S, Bercovich N, Todesco M, Mandel JR, Odenheimer J, Ziegler E, Lee JS, Baute GJ, Owens GL, Grassa CJ, Ebert DP, Ostevik KL, Moyers BT, Yakimowski S, Masalia RR, Gao L, Ćalić I, Bowers JE, Kane NC, Swanevelder DZH, Kubach T, Muños S, Langlade NB, Burke JM, Rieseberg LH.

Nat Plants. 2019 Jan;5(1):54-62. doi: 10.1038/s41477-018-0329-0. Epub 2018 Dec 31.


Demographic inference in barn swallows using whole-genome data shows signal for bottleneck and subspecies differentiation during the Holocene.

Smith CCR, Flaxman SM, Scordato ESC, Kane NC, Hund AK, Sheta BM, Safran RJ.

Mol Ecol. 2018 Nov;27(21):4200-4212. doi: 10.1111/mec.14854. Epub 2018 Sep 22.


Genetics of alternative splicing evolution during sunflower domestication.

Smith CCR, Tittes S, Mendieta JP, Collier-Zans E, Rowe HC, Rieseberg LH, Kane NC.

Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6768-6773. doi: 10.1073/pnas.1803361115. Epub 2018 Jun 11.


Comparative analysis of the mitochondrial genomes of six newly sequenced diatoms reveals group II introns in the barcoding region of cox1.

Pogoda CS, Keepers KG, Hamsher SE, Stepanek JG, Kane NC, Kociolek JP.

Mitochondrial DNA A DNA Mapp Seq Anal. 2019 Jan;30(1):43-51. doi: 10.1080/24701394.2018.1450397. Epub 2018 Mar 11.


Diversity and evolution of the repetitive genomic content in Cannabis sativa.

Pisupati R, Vergara D, Kane NC.

BMC Genomics. 2018 Feb 21;19(1):156. doi: 10.1186/s12864-018-4494-3.


Reductions in complexity of mitochondrial genomes in lichen-forming fungi shed light on genome architecture of obligate symbioses.

Pogoda CS, Keepers KG, Lendemer JC, Kane NC, Tripp EA.

Mol Ecol. 2018 Mar;27(5):1155-1169. doi: 10.1111/mec.14519. Epub 2018 Mar 23.


Genetic Architecture of Capitate Glandular Trichome Density in Florets of Domesticated Sunflower (Helianthus annuus L.).

Gao QM, Kane NC, Hulke BS, Reinert S, Pogoda CS, Tittes S, Prasifka JR.

Front Plant Sci. 2018 Jan 9;8:2227. doi: 10.3389/fpls.2017.02227. eCollection 2017.


Effects of assortative mate choice on the genomic and morphological structure of a hybrid zone between two bird subspecies.

Semenov GA, Scordato ESC, Khaydarov DR, Smith CCR, Kane NC, Safran RJ.

Mol Ecol. 2017 Nov;26(22):6430-6444. doi: 10.1111/mec.14376. Epub 2017 Nov 1.


Establishing a national laboratory quality system for HIV diagnosis and monitoring in resource-limited settings: Experience from Senegal.

Mbengue MAS, Sarr M, Diaw PA, Diall PAN, Toure MD, Faye NFFN, Gueye B, Kane NCT, Mboup S.

Afr J Lab Med. 2016 Oct 17;5(2):440. doi: 10.4102/ajlm.v5i2.440. eCollection 2016. No abstract available.


Genomic variation across two barn swallow hybrid zones reveals traits associated with divergence in sympatry and allopatry.

Scordato ESC, Wilkins MR, Semenov G, Rubtsov AS, Kane NC, Safran RJ.

Mol Ecol. 2017 Oct;26(20):5676-5691. doi: 10.1111/mec.14276. Epub 2017 Sep 5.


The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.

Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB.

Nature. 2017 Jun 1;546(7656):148-152. doi: 10.1038/nature22380. Epub 2017 May 22.


Compromised External Validity: Federally Produced Cannabis Does Not Reflect Legal Markets.

Vergara D, Bidwell LC, Gaudino R, Torres A, Du G, Ruthenburg TC, deCesare K, Land DP, Hutchison KE, Kane NC.

Sci Rep. 2017 Apr 19;7:46528. doi: 10.1038/srep46528.


Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus.

Leff JW, Lynch RC, Kane NC, Fierer N.

New Phytol. 2017 Apr;214(1):412-423. doi: 10.1111/nph.14323. Epub 2016 Nov 23.


Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.).

Grassa CJ, Ebert DP, Kane NC, Rieseberg LH.

Genome Announc. 2016 Sep 15;4(5). pii: e00981-16. doi: 10.1128/genomeA.00981-16.


Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation.

Safran RJ, Scordato ES, Wilkins MR, Hubbard JK, Jenkins BR, Albrecht T, Flaxman SM, Karaardıç H, Vortman Y, Lotem A, Nosil P, Pap P, Shen S, Chan SF, Parchman TL, Kane NC.

Mol Ecol. 2016 Aug;25(16):3865-83. doi: 10.1111/mec.13740. Epub 2016 Jul 29.


Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools.

Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS.

Mol Ecol. 2016 Aug;25(15):3622-31. doi: 10.1111/mec.13615. Epub 2016 Apr 13.


Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.).

Kantar MB, Sosa CC, Khoury CK, Castañeda-Álvarez NP, Achicanoy HA, Bernau V, Kane NC, Marek L, Seiler G, Rieseberg LH.

Front Plant Sci. 2015 Oct 8;6:841. doi: 10.3389/fpls.2015.00841. eCollection 2015.


The complete chloroplast genomes of Cannabis sativa and Humulus lupulus.

Vergara D, White KH, Keepers KG, Kane NC.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3793-4. doi: 10.3109/19401736.2015.1079905. Epub 2015 Sep 2.


The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis.

Keepers K, Martin AP, Kane NC.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2349-50. doi: 10.3109/19401736.2015.1025259. Epub 2015 Jun 10.


Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation.

Delmore KE, Hübner S, Kane NC, Schuster R, Andrew RL, Câmara F, Guigó R, Irwin DE.

Mol Ecol. 2015 Apr;24(8):1873-88. doi: 10.1111/mec.13150. Epub 2015 Apr 3.


Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives.

Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH.

New Phytol. 2015 Apr;206(2):830-8. doi: 10.1111/nph.13255. Epub 2015 Jan 12.


Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria.

Lynch RC, Darcy JL, Kane NC, Nemergut DR, Schmidt SK.

Front Microbiol. 2014 Dec 17;5:698. doi: 10.3389/fmicb.2014.00698. eCollection 2014.


Antiretroviral treatment outcome in HIV-1-infected patients routinely followed up in capital cities and remote areas of Senegal, Mali and Guinea-Conakry.

Diouara AA, Ndiaye HD, Guindo I, Bangoura N, Cissé M, Edmond T, Bougoudogo F, Mboup S, Peeters M, Ayouba A, Kane NC.

J Int AIDS Soc. 2014 Dec 18;17:19315. doi: 10.7448/IAS.17.1.19315. eCollection 2014.


Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower.

Whitney KD, Broman KW, Kane NC, Hovick SM, Randell RA, Rieseberg LH.

Mol Ecol. 2015 May;24(9):2194-211. doi: 10.1111/mec.13044. Epub 2015 Jan 21.


The genomics of adaptation, divergence and speciation: a congealing theory.

Tittes S, Kane NC.

Mol Ecol. 2014 Aug;23(16):3938-40. doi: 10.1111/mec.12855.


Bridging physiological and evolutionary time-scales in a gene regulatory network.

Marchand G, Huynh-Thu VA, Kane NC, Arribat S, Varès D, Rengel D, Balzergue S, Rieseberg LH, Vincourt P, Geurts P, Vignes M, Langlade NB.

New Phytol. 2014 Jul;203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2.


Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke.

Bock DG, Kane NC, Ebert DP, Rieseberg LH.

New Phytol. 2014 Feb;201(3):1021-30. doi: 10.1111/nph.12560. Epub 2013 Nov 18.


Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Mol Ecol Resour. 2014 Jan;14(1):166-77. doi: 10.1111/1755-0998.12163. Epub 2013 Sep 18.


The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads.

Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A.

BMC Genomics. 2013 Oct 6;14:686. doi: 10.1186/1471-2164-14-686.


Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species.

Sveinsson S, Gill N, Kane NC, Cronk Q.

BMC Genomics. 2013 Jul 24;14:502. doi: 10.1186/1471-2164-14-502.


Genomic islands of divergence are not affected by geography of speciation in sunflowers.

Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, Kane NC, Bowers JE, Burke JM, Rieseberg LH.

Nat Commun. 2013;4:1827. doi: 10.1038/ncomms2833.


A road map for molecular ecology.

Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Rieseberg LH.

Mol Ecol. 2013 May;22(10):2605-26. doi: 10.1111/mec.12319. Review.


Mandated data archiving greatly improves access to research data.

Vines TH, Andrew RL, Bock DG, Franklin MT, Gilbert KJ, Kane NC, Moore JS, Moyers BT, Renaut S, Rennison DJ, Veen T, Yeaman S.

FASEB J. 2013 Apr;27(4):1304-8. doi: 10.1096/fj.12-218164. Epub 2013 Jan 3.


Recent nonhybrid origin of sunflower ecotypes in a novel habitat.

Andrew RL, Kane NC, Baute GJ, Grassa CJ, Rieseberg LH.

Mol Ecol. 2013 Feb;22(3):799-813. doi: 10.1111/mec.12038. Epub 2012 Oct 16.


Sunflower genetic, genomic and ecological resources.

Kane NC, Burke JM, Marek L, Seiler G, Vear F, Baute G, Knapp SJ, Vincourt P, Rieseberg LH.

Mol Ecol Resour. 2013 Jan;13(1):10-20. doi: 10.1111/1755-0998.12023. Epub 2012 Oct 8. Review.


Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE.

Gilbert KJ, Andrew RL, Bock DG, Franklin MT, Kane NC, Moore JS, Moyers BT, Renaut S, Rennison DJ, Veen T, Vines TH.

Mol Ecol. 2012 Oct;21(20):4925-30. doi: 10.1111/j.1365-294X.2012.05754.x. Epub 2012 Sep 24.


The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.

Staton SE, Bakken BH, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM.

Plant J. 2012 Oct;72(1):142-53. doi: 10.1111/j.1365-313X.2012.05072.x. Epub 2012 Jul 30.


Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing.

Lai Z, Zou Y, Kane NC, Choi JH, Wang X, Rieseberg LH.

Methods Mol Biol. 2012;888:119-33. doi: 10.1007/978-1-61779-870-2_8.


The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq.

Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH.

Biology (Basel). 2012 Oct 25;1(3):575-96. doi: 10.3390/biology1030575.


Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.

Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Am J Bot. 2012 Feb;99(2):209-18. doi: 10.3732/ajb.1100313. Epub 2011 Nov 4.


Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress.

Mayrose M, Kane NC, Mayrose I, Dlugosch KM, Rieseberg LH.

Mol Ecol. 2011 Nov;20(22):4683-94. doi: 10.1111/j.1365-294X.2011.05301.x. Epub 2011 Oct 11.


Sunflower domestication alleles support single domestication center in eastern North America.

Blackman BK, Scascitelli M, Kane NC, Luton HH, Rasmussen DA, Bye RA, Lentz DL, Rieseberg LH.

Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14360-5. doi: 10.1073/pnas.1104853108. Epub 2011 Aug 15.


Molecular evolution across the Asteraceae: micro- and macroevolutionary processes.

Kane NC, Barker MS, Zhan SH, Rieseberg LH.

Mol Biol Evol. 2011 Dec;28(12):3225-35. doi: 10.1093/molbev/msr166. Epub 2011 Jun 20.


Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome.

Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, Lai Z, Stewart ML, Bekele E, Engels JM, Cronk QC, Rieseberg LH.

Mol Ecol Resour. 2010 Nov;10(6):1048-58. doi: 10.1111/j.1755-0998.2010.02859.x.


Permanent Genetic Resources added to the Molecular Ecology Resources Database 1 February 2010-31 March 2010.

Molecular Ecology Resources Primer Development Consortium, Aurelle D, Baker AJ, Bottin L, Brouat C, Caccone A, Chaix A, Dhakal P, Ding Y, Duplantier JM, Fiedler W, Fietz J, Fong Y, Forcioli D, Freitas TR, Gunnarsson GH, Haddrath O, Hadziabdic D, Hauksdottir S, Havill NP, Heinrich M, Heinz T, Hjorleifsdottir S, Hong Y, Hreggvidsson GO, Huchette S, Hurst J, Kane M, Kane NC, Kawakami T, Ke W, Keith RA, Klauke N, Klein JL, Kun JF, Li C, Li GQ, Li JJ, Loiseau A, Lu LZ, Lucas M, Martins-Ferreira C, Mokhtar-Jamaï K, Olafsson K, Pampoulie C, Pan L, Pooler MR, Ren JD, Rinehart TA, Roussel V, Santos MO, Schaefer HM, Scheffler BE, Schmidt A, Segelbacher G, Shen JD, Skirnisdottir S, Sommer S, Tao ZR, Taubert R, Tian Y, Tomiuk J, Trigiano RN, Ungerer MC, Van Wormhoudt A, Wadl PA, Wang DQ, Weis-Dootz T, Xia Q, Yuan QY.

Mol Ecol Resour. 2010 Jul;10(4):751-4. doi: 10.1111/j.1755-0998.2010.02871.x. Epub 2010 May 23.


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