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Items: 1 to 50 of 290

1.

Crystal structure of heliorhodopsin.

Shihoya W, Inoue K, Singh M, Konno M, Hososhima S, Yamashita K, Ikeda K, Higuchi A, Izume T, Okazaki S, Hashimoto M, Mizutori R, Tomida S, Yamauchi Y, Abe-Yoshizumi R, Katayama K, Tsunoda SP, Shibata M, Furutani Y, Pushkarev A, Béjà O, Uchihashi T, Kandori H, Nureki O.

Nature. 2019 Oct;574(7776):132-136. doi: 10.1038/s41586-019-1604-6. Epub 2019 Sep 25.

PMID:
31554965
2.

Unique Photochemistry Observed in a New Microbial Rhodopsin.

Kataoka C, Inoue K, Katayama K, Béjà O, Kandori H.

J Phys Chem Lett. 2019 Aug 21:5117-5121. doi: 10.1021/acs.jpclett.9b01957. [Epub ahead of print]

PMID:
31433641
3.

Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor.

Onoue Y, Iwaki M, Shinobu A, Nishihara Y, Iwatsuki H, Terashima H, Kitao A, Kandori H, Homma M.

Sci Rep. 2019 Aug 2;9(1):11216. doi: 10.1038/s41598-019-46038-6.

4.

X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin.

Morizumi T, Ou WL, Van Eps N, Inoue K, Kandori H, Brown LS, Ernst OP.

Sci Rep. 2019 Aug 2;9(1):11283. doi: 10.1038/s41598-019-47445-5.

5.

Role of Gln114 in Spectral Tuning of a Long-Wavelength Sensitive Visual Pigment.

Katayama K, Nakamura S, Sasaki T, Imai H, Kandori H.

Biochemistry. 2019 Jul 2;58(26):2944-2952. doi: 10.1021/acs.biochem.9b00340. Epub 2019 Jun 11.

PMID:
31144811
6.

Introduction to the Biophysical Society of Japan (BSJ).

Kandori H, Harada Y, Noji H.

Biophys Rev. 2019 Jun;11(3):265-266. doi: 10.1007/s12551-019-00551-0. Epub 2019 May 16. No abstract available.

7.

Engineered Functional Recovery of Microbial Rhodopsin Without Retinal-Binding Lysine.

Yamauchi Y, Konno M, Yamada D, Yura K, Inoue K, Béjà O, Kandori H.

Photochem Photobiol. 2019 Sep;95(5):1116-1121. doi: 10.1111/php.13114. Epub 2019 Jul 2.

PMID:
31066906
8.

Red-shifting mutation of light-driven sodium-pump rhodopsin.

Inoue K, Del Carmen Marín M, Tomida S, Nakamura R, Nakajima Y, Olivucci M, Kandori H.

Nat Commun. 2019 Apr 30;10(1):1993. doi: 10.1038/s41467-019-10000-x.

9.

Distortion and a Strong Hydrogen Bond in the Retinal Chromophore Enable Sodium-Ion Transport by the Sodium-Ion Pump KR2.

Nishimura N, Mizuno M, Kandori H, Mizutani Y.

J Phys Chem B. 2019 Apr 25;123(16):3430-3440. doi: 10.1021/acs.jpcb.9b00928. Epub 2019 Apr 16.

PMID:
30945873
10.

Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche.

Bulzu PA, Andrei AŞ, Salcher MM, Mehrshad M, Inoue K, Kandori H, Beja O, Ghai R, Banciu HL.

Nat Microbiol. 2019 Jul;4(7):1129-1137. doi: 10.1038/s41564-019-0404-y. Epub 2019 Apr 1.

PMID:
30936485
11.

Ultrafast Dynamics of Heliorhodopsins.

Tahara S, Singh M, Kuramochi H, Shihoya W, Inoue K, Nureki O, Béjà O, Mizutani Y, Kandori H, Tahara T.

J Phys Chem B. 2019 Mar 21;123(11):2507-2512. doi: 10.1021/acs.jpcb.9b00887. Epub 2019 Mar 8.

PMID:
30742768
12.

Point Mutation of Anabaena Sensory Rhodopsin Enhances Ground-State Hydrogen Out-of-Plane Wag Raman Activity.

Roy PP, Abe-Yoshizumi R, Kandori H, Buckup T.

J Phys Chem Lett. 2019 Mar 7;10(5):1012-1017. doi: 10.1021/acs.jpclett.8b03805. Epub 2019 Feb 20.

PMID:
30742765
13.

Spectroscopic study of the transmembrane domain of a rhodopsin-phosphodiesterase fusion protein from a unicellular eukaryote.

Watari M, Ikuta T, Yamada D, Shihoya W, Yoshida K, Tsunoda SP, Nureki O, Kandori H.

J Biol Chem. 2019 Mar 8;294(10):3432-3443. doi: 10.1074/jbc.RA118.006277. Epub 2019 Jan 8.

PMID:
30622140
14.

Heliorhodopsins are absent in diderm (Gram-negative) bacteria: Some thoughts and possible implications for activity.

Flores-Uribe J, Hevroni G, Ghai R, Pushkarev A, Inoue K, Kandori H, Béjà O.

Environ Microbiol Rep. 2019 Jun;11(3):419-424. doi: 10.1111/1758-2229.12730. Epub 2019 Jan 21.

PMID:
30618066
15.

Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming.

Marín MDC, Agathangelou D, Orozco-Gonzalez Y, Valentini A, Kato Y, Abe-Yoshizumi R, Kandori H, Choi A, Jung KH, Haacke S, Olivucci M.

J Am Chem Soc. 2019 Jan 9;141(1):262-271. doi: 10.1021/jacs.8b09311. Epub 2018 Dec 28.

16.

Mapping the ultrafast vibrational dynamics of all-trans and 13-cis retinal isomerization in Anabaena Sensory Rhodopsin.

Roy PP, Kato Y, Abe-Yoshizumi R, Pieri E, Ferré N, Kandori H, Buckup T.

Phys Chem Chem Phys. 2018 Dec 12;20(48):30159-30173. doi: 10.1039/c8cp05469j.

PMID:
30484447
17.

Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins.

Otomo A, Mizuno M, Singh M, Shihoya W, Inoue K, Nureki O, Béjà O, Kandori H, Mizutani Y.

J Phys Chem Lett. 2018 Nov 15;9(22):6431-6436. doi: 10.1021/acs.jpclett.8b02741. Epub 2018 Oct 29.

PMID:
30351947
18.

Understanding Colour Tuning Rules and Predicting Absorption Wavelengths of Microbial Rhodopsins by Data-Driven Machine-Learning Approach.

Karasuyama M, Inoue K, Nakamura R, Kandori H, Takeuchi I.

Sci Rep. 2018 Oct 22;8(1):15580. doi: 10.1038/s41598-018-33984-w.

19.

Zn2+-Binding to the Voltage-Gated Proton Channel Hv1/VSOP.

Iwaki M, Takeshita K, Kondo HX, Kinoshita K, Okamura Y, Takano Y, Nakagawa A, Kandori H.

J Phys Chem B. 2018 Oct 4;122(39):9076-9080. doi: 10.1021/acs.jpcb.8b04890. Epub 2018 Sep 25.

PMID:
30204443
20.

Hydrogen Bonding Environments in the Photocycle Process around the Flavin Chromophore of the AppA-BLUF domain.

Iwata T, Nagai T, Ito S, Osoegawa S, Iseki M, Watanabe M, Unno M, Kitagawa S, Kandori H.

J Am Chem Soc. 2018 Sep 26;140(38):11982-11991. doi: 10.1021/jacs.8b05123. Epub 2018 Sep 12.

PMID:
30168326
21.

Structural mechanisms of selectivity and gating in anion channelrhodopsins.

Kato HE, Kim YS, Paggi JM, Evans KE, Allen WE, Richardson C, Inoue K, Ito S, Ramakrishnan C, Fenno LE, Yamashita K, Hilger D, Lee SY, Berndt A, Shen K, Kandori H, Dror RO, Kobilka BK, Deisseroth K.

Nature. 2018 Sep;561(7723):349-354. doi: 10.1038/s41586-018-0504-5. Epub 2018 Aug 29.

22.

Crystal structure of the natural anion-conducting channelrhodopsin GtACR1.

Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, Fenno LE, Evans KE, Paggi JM, Dror RO, Kandori H, Kobilka BK, Deisseroth K.

Nature. 2018 Sep;561(7723):343-348. doi: 10.1038/s41586-018-0511-6. Epub 2018 Aug 29.

23.

Mutation Study of Heliorhodopsin 48C12.

Singh M, Inoue K, Pushkarev A, Béjà O, Kandori H.

Biochemistry. 2018 Aug 21;57(33):5041-5049. doi: 10.1021/acs.biochem.8b00637. Epub 2018 Aug 6.

PMID:
30036039
24.

Time-resolved FTIR study of light-driven sodium pump rhodopsins.

Chen HF, Inoue K, Ono H, Abe-Yoshizumi R, Wada A, Kandori H.

Phys Chem Chem Phys. 2018 Jul 4;20(26):17694-17704. doi: 10.1039/c8cp02599a.

PMID:
29938283
25.

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics.

Pushkarev A, Inoue K, Larom S, Flores-Uribe J, Singh M, Konno M, Tomida S, Ito S, Nakamura R, Tsunoda SP, Philosof A, Sharon I, Yutin N, Koonin EV, Kandori H, Béjà O.

Nature. 2018 Jun;558(7711):595-599. doi: 10.1038/s41586-018-0225-9. Epub 2018 Jun 20.

PMID:
29925949
26.

Hydrogen-bonding network at the cytoplasmic region of a light-driven sodium pump rhodopsin KR2.

Tomida S, Ito S, Inoue K, Kandori H.

Biochim Biophys Acta Bioenerg. 2018 Sep;1859(9):684-691. doi: 10.1016/j.bbabio.2018.05.017. Epub 2018 May 28.

27.

Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy.

Shibata M, Inoue K, Ikeda K, Konno M, Singh M, Kataoka C, Abe-Yoshizumi R, Kandori H, Uchihashi T.

Sci Rep. 2018 May 29;8(1):8262. doi: 10.1038/s41598-018-26606-y.

28.

Spectroscopic Study of Proton-Transfer Mechanism of Inward Proton-Pump Rhodopsin, Parvularcula oceani Xenorhodopsin.

Inoue K, Tahara S, Kato Y, Takeuchi S, Tahara T, Kandori H.

J Phys Chem B. 2018 Jun 28;122(25):6453-6461. doi: 10.1021/acs.jpcb.8b01279. Epub 2018 Jun 14.

PMID:
29807427
29.

Production of a Light-Gated Proton Channel by Replacing the Retinal Chromophore with Its Synthetic Vinylene Derivative.

Takayama R, Kaneko A, Okitsu T, Tsunoda SP, Shimono K, Mizuno M, Kojima K, Tsukamoto T, Kandori H, Mizutani Y, Wada A, Sudo Y.

J Phys Chem Lett. 2018 Jun 7;9(11):2857-2862. doi: 10.1021/acs.jpclett.8b00879. Epub 2018 May 16.

PMID:
29750864
30.

Origin of the Reactive and Nonreactive Excited States in the Primary Reaction of Rhodopsins: pH Dependence of Femtosecond Absorption of Light-Driven Sodium Ion Pump Rhodopsin KR2.

Tahara S, Takeuchi S, Abe-Yoshizumi R, Inoue K, Ohtani H, Kandori H, Tahara T.

J Phys Chem B. 2018 May 10;122(18):4784-4792. doi: 10.1021/acs.jpcb.8b01934. Epub 2018 Apr 30.

PMID:
29708342
31.

Long-distance perturbation on Schiff base-counterion interactions by His30 and the extracellular Na+-binding site in Krokinobacter rhodopsin 2.

Shigeta A, Ito S, Kaneko R, Tomida S, Inoue K, Kandori H, Kawamura I.

Phys Chem Chem Phys. 2018 Mar 28;20(13):8450-8455. doi: 10.1039/c8cp00626a.

PMID:
29537054
32.

Light-Driven Sodium-Pumping Rhodopsin: A New Concept of Active Transport.

Kandori H, Inoue K, Tsunoda SP.

Chem Rev. 2018 Nov 14;118(21):10646-10658. doi: 10.1021/acs.chemrev.7b00548. Epub 2018 Mar 7. Review.

PMID:
29513519
33.

Structural Evolution of a Retinal Chromophore in the Photocycle of Halorhodopsin from Natronobacterium pharaonis.

Mizuno M, Nakajima A, Kandori H, Mizutani Y.

J Phys Chem A. 2018 Mar 8;122(9):2411-2423. doi: 10.1021/acs.jpca.7b12332. Epub 2018 Feb 26.

PMID:
29460629
34.

Effect of point mutations on the ultrafast photo-isomerization of Anabaena sensory rhodopsin.

Agathangelou D, Orozco-Gonzalez Y, Del Carmen Marín M, Roy PP, Brazard J, Kandori H, Jung KH, Léonard J, Buckup T, Ferré N, Olivucci M, Haacke S.

Faraday Discuss. 2018 Apr 17;207(0):55-75. doi: 10.1039/c7fd00200a.

PMID:
29388996
35.

Chimeric microbial rhodopsins for optical activation of Gs-proteins.

Yoshida K, Yamashita T, Sasaki K, Inoue K, Shichida Y, Kandori H.

Biophys Physicobiol. 2017 Dec 19;14:183-190. doi: 10.2142/biophysico.14.0_183. eCollection 2017.

36.

Complex molecular systems: a frontier of molecular science.

Tahara T, Kitao A, Mizutani Y, Kandori H, Fujii M.

Phys Chem Chem Phys. 2018 Jan 31;20(5):2945-2946. doi: 10.1039/c8cp90010h. No abstract available.

PMID:
29350721
37.

Potential Second-Harmonic Ghost Bands in Fourier Transform Infrared (FT-IR) Difference Spectroscopy of Proteins.

Ito S, Kandori H, Lorenz-Fonfria VA.

Appl Spectrosc. 2018 Jun;72(6):956-963. doi: 10.1177/0003702818757521. Epub 2018 Feb 13.

PMID:
29350538
38.

Effect of Temperature and Hydration Level on Purple Membrane Dynamics Studied Using Broadband Dielectric Spectroscopy from Sub-GHz to THz Regions.

Yamamoto N, Ito S, Nakanishi M, Chatani E, Inoue K, Kandori H, Tominaga K.

J Phys Chem B. 2018 Feb 1;122(4):1367-1377. doi: 10.1021/acs.jpcb.7b10077. Epub 2018 Jan 23.

PMID:
29304273
39.

"In situ" observation of the role of chloride ion binding to monkey green sensitive visual pigment by ATR-FTIR spectroscopy.

Katayama K, Furutani Y, Iwaki M, Fukuda T, Imai H, Kandori H.

Phys Chem Chem Phys. 2018 Jan 31;20(5):3381-3387. doi: 10.1039/c7cp07277e.

PMID:
29297909
40.

Unique Hydrogen Bonds in Membrane Protein Monitored by Whole Mid-IR ATR Spectroscopy in Aqueous Solution.

Ito S, Iwaki M, Sugita S, Abe-Yoshizumi R, Iwata T, Inoue K, Kandori H.

J Phys Chem B. 2018 Jan 11;122(1):165-170. doi: 10.1021/acs.jpcb.7b11064. Epub 2017 Dec 22.

PMID:
29215887
41.

Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering.

Kaneko A, Inoue K, Kojima K, Kandori H, Sudo Y.

Biophys Rev. 2017 Dec;9(6):861-876. doi: 10.1007/s12551-017-0335-x. Epub 2017 Nov 25. Review.

42.

Low-temperature FTIR spectroscopy provides evidence for protein-bound water molecules in eubacterial light-driven ion pumps.

Nomura Y, Ito S, Teranishi M, Ono H, Inoue K, Kandori H.

Phys Chem Chem Phys. 2018 Jan 31;20(5):3165-3171. doi: 10.1039/c7cp05674e.

PMID:
28975940
43.

Functional characterization of sodium-pumping rhodopsins with different pumping properties.

Tsunoda SP, Prigge M, Abe-Yoshizumi R, Inoue K, Kozaki Y, Ishizuka T, Yawo H, Yizhar O, Kandori H.

PLoS One. 2017 Jul 27;12(7):e0179232. doi: 10.1371/journal.pone.0179232. eCollection 2017.

44.

Spectral Tuning Mechanism of Primate Blue-sensitive Visual Pigment Elucidated by FTIR Spectroscopy.

Katayama K, Nonaka Y, Tsutsui K, Imai H, Kandori H.

Sci Rep. 2017 Jul 7;7(1):4904. doi: 10.1038/s41598-017-05177-4.

45.

Molecular properties of a DTD channelrhodopsin from Guillardia theta.

Yamauchi Y, Konno M, Ito S, Tsunoda SP, Inoue K, Kandori H.

Biophys Physicobiol. 2017 May 20;14:57-66. doi: 10.2142/biophysico.14.0_57. eCollection 2017.

46.

Hydrogen Bonding Environment of the N3-H Group of Flavin Mononucleotide in the Light Oxygen Voltage Domains of Phototropins.

Iwata T, Nozaki D, Yamamoto A, Koyama T, Nishina Y, Shiga K, Tokutomi S, Unno M, Kandori H.

Biochemistry. 2017 Jun 20;56(24):3099-3108. doi: 10.1021/acs.biochem.7b00057. Epub 2017 Jun 5.

PMID:
28530801
47.

Synthesis and biological evaluation of novel selective androgen receptor modulators (SARMs) Part III: Discovery of 4-(5-oxopyrrolidine-1-yl)benzonitrile derivative 2f as a clinical candidate.

Aikawa K, Asano M, Ono K, Habuka N, Yano J, Wilson K, Fujita H, Kandori H, Hara T, Morimoto M, Santou T, Yamaoka M, Nakayama M, Hasuoka A.

Bioorg Med Chem. 2017 Jul 1;25(13):3330-3349. doi: 10.1016/j.bmc.2017.04.018. Epub 2017 Apr 13.

PMID:
28454849
48.

FTIR Analysis of a Light-driven Inward Proton-pumping Rhodopsin at 77 K.

Ito S, Sugita S, Inoue K, Kandori H.

Photochem Photobiol. 2017 Nov;93(6):1381-1387. doi: 10.1111/php.12771. Epub 2017 Jun 22.

PMID:
28380687
49.

A unique choanoflagellate enzyme rhodopsin exhibits light-dependent cyclic nucleotide phosphodiesterase activity.

Yoshida K, Tsunoda SP, Brown LS, Kandori H.

J Biol Chem. 2017 May 5;292(18):7531-7541. doi: 10.1074/jbc.M117.775569. Epub 2017 Mar 16.

50.

Solid-State Nuclear Magnetic Resonance Structural Study of the Retinal-Binding Pocket in Sodium Ion Pump Rhodopsin.

Shigeta A, Ito S, Inoue K, Okitsu T, Wada A, Kandori H, Kawamura I.

Biochemistry. 2017 Jan 31;56(4):543-550. doi: 10.1021/acs.biochem.6b00999. Epub 2017 Jan 20.

PMID:
28040890

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