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Exaggerated groups: amplification in ensemble coding of temporal and spatial features.

Kanaya S, Hayashi MJ, Whitney D.

Proc Biol Sci. 2018 May 30;285(1879). pii: 20172770. doi: 10.1098/rspb.2017.2770.


Extracellular calcium increases fibroblast growth factor 2 gene expression via extracellular signal-regulated kinase 1/2 and protein kinase A signaling in mouse dental papilla cells.

Kanaya S, Xiao B, Sakisaka Y, Suto M, Maruyama K, Saito M, Nemoto E.

J Appl Oral Sci. 2018 May 14;26:e20170231. doi: 10.1590/1678-7757-2017-0231.


123I-Labeled oxLDL Is Widely Distributed Throughout the Whole Body in Mice.

Nakano A, Kawashima H, Miyake Y, Zeniya T, Yamamoto A, Koshino K, Temma T, Fukuda T, Fujita Y, Kakino A, Kanaya S, Sawamura T, Iida H.

Nucl Med Mol Imaging. 2018 Apr;52(2):144-153. doi: 10.1007/s13139-017-0497-2. Epub 2017 Oct 2.


Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses.

Ohnishi M, Anegawa A, Sugiyama Y, Harada K, Oikawa A, Nakayama Y, Matsuda F, Nakamura Y, Sasaki R, Shichijo C, Hatcher PG, Fukaki H, Kanaya S, Aoki K, Yamazaki M, Fukusaki E, Saito K, Mimura T.

Plant Cell Physiol. 2018 Apr 12. doi: 10.1093/pcp/pcy069. [Epub ahead of print]


Structural Basis for the Serratia marcescens Lipase Secretion System: Crystal Structures of the Membrane Fusion Protein and Nucleotide-Binding Domain.

Murata D, Okano H, Angkawidjaja C, Akutsu M, Tanaka SI, Kitahara K, Yoshizawa T, Matsumura H, Kado Y, Mizohata E, Inoue T, Sano S, Koga Y, Kanaya S, Takano K.

Biochemistry. 2017 Nov 28;56(47):6281-6291. doi: 10.1021/acs.biochem.7b00985. Epub 2017 Nov 10.


UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics.

Sakurai N, Narise T, Sim JS, Lee CM, Ikeda C, Akimoto N, Kanaya S, Stegle O.

Bioinformatics. 2018 Feb 15;34(4):698-700. doi: 10.1093/bioinformatics/btx649.


Lead-free perovskite solar cells using Sb and Bi-based A3B2X9 and A3BX6 crystals with normal and inverse cell structures.

Baranwal AK, Masutani H, Sugita H, Kanda H, Kanaya S, Shibayama N, Sanehira Y, Ikegami M, Numata Y, Yamada K, Miyasaka T, Umeyama T, Imahori H, Ito S.

Nano Converg. 2017;4(1):26. doi: 10.1186/s40580-017-0120-3. Epub 2017 Sep 22.


Esophagojejunostomy With Linear Staplers in Laparoscopic Total Gastrectomy: Experience With 168 Cases in 5 Consecutive Years.

Miura S, Kanaya S, Hosogi H, Kawada H, Akagawa S, Shimoike N, Okumura S, Okada T, Ito T, Arimoto A.

Surg Laparosc Endosc Percutan Tech. 2017 Oct;27(5):e101-e107. doi: 10.1097/SLE.0000000000000464.


Transition-Metal-Free Reductive Coupling of 1,3-Butadienes with Aldehydes Catalyzed by Dibutyliodotin Hydride.

Suzuki I, Uji Y, Kanaya S, Ieki R, Tsunoi S, Shibata I.

Org Lett. 2017 Oct 6;19(19):5392-5394. doi: 10.1021/acs.orglett.7b02671. Epub 2017 Sep 11.


Oviposition inhibitor in umbelliferous medicinal plants for the common yellow swallowtail (Papilio machaon).

Morino C, Morita Y, Minami K, Nishidono Y, Nakashima Y, Ozawa R, Takabayashi J, Ono N, Kanaya S, Tamura T, Tezuka Y, Tanaka K.

J Nat Med. 2018 Jan;72(1):161-165. doi: 10.1007/s11418-017-1124-3. Epub 2017 Sep 7.


Metabolomic Studies of Indonesian Jamu Medicines: Prediction of Jamu Efficacy and Identification of Important Metabolites.

Wijaya SH, Batubara I, Nishioka T, Altaf-Ul-Amin M, Kanaya S.

Mol Inform. 2017 Dec;36(12). doi: 10.1002/minf.201700050. Epub 2017 Jul 6.


Co-ordinated Regulations of mRNA Synthesis and Decay during Cold Acclimation in Arabidopsis Cells.

Arae T, Isai S, Sakai A, Mineta K, Yokota Hirai M, Suzuki Y, Kanaya S, Yamaguchi J, Naito S, Chiba Y.

Plant Cell Physiol. 2017 Jun 1;58(6):1090-1102. doi: 10.1093/pcp/pcx059.


Enhancement of the hole conducting effect of NiO by a N2 blow drying method in printable perovskite solar cells with low-temperature carbon as the counter electrode.

Peiris TAN, Baranwal AK, Kanda H, Fukumoto S, Kanaya S, Cojocaru L, Bessho T, Miyasaka T, Segawa H, Ito S.

Nanoscale. 2017 May 4;9(17):5475-5482. doi: 10.1039/c7nr00372b.


Wearable deep body thermometers and their uses in continuous monitoring for daily healthcare.

Huang M, Tamura T, Yoshimura T, Tsuchikawa T, Kanaya S.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:177-180. doi: 10.1109/EMBC.2016.7590669.


Data integration aids understanding of butterfly-host plant networks.

Muto-Fujita A, Takemoto K, Kanaya S, Nakazato T, Tokimatsu T, Matsumoto N, Kono M, Chubachi Y, Ozaki K, Kotera M.

Sci Rep. 2017 Mar 6;7:43368. doi: 10.1038/srep43368.


Big Data and Network Biology 2016.

Kanaya S, Altaf-Ul-Amin M, Kiboi SK, Afendi FM.

Biomed Res Int. 2017;2017:9432460. doi: 10.1155/2017/9432460. Epub 2017 Jan 26. No abstract available.


Novel Approach to Classify Plants Based on Metabolite-Content Similarity.

Liu K, Abdullah AA, Huang M, Nishioka T, Altaf-Ul-Amin M, Kanaya S.

Biomed Res Int. 2017;2017:5296729. doi: 10.1155/2017/5296729. Epub 2017 Jan 9.


A Chair-Based Unobtrusive Cuffless Blood Pressure Monitoring System Based on Pulse Arrival Time.

Tang Z, Tamura T, Sekine M, Huang M, Chen W, Yoshida M, Sakatani K, Kobayashi H, Kanaya S.

IEEE J Biomed Health Inform. 2017 Sep;21(5):1194-1205. doi: 10.1109/JBHI.2016.2614962. Epub 2016 Oct 4.


Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines.

Wijaya SH, Afendi FM, Batubara I, Darusman LK, Altaf-Ul-Amin M, Kanaya S.

BMC Bioinformatics. 2016 Dec 7;17(1):520.


Our experience with laparoscopic partial gastrectomy by the 'lift-and-cut method' for gastric gastrointestinal stromal tumor with maximal preservation of the remnant stomach.

Okumura S, Kanaya S, Hosogi H, Ito T, Miura S, Okada T, Shimoike N, Akagawa S, Kawada H, Arimoto A.

Surg Endosc. 2017 Aug;31(8):3398-3404. doi: 10.1007/s00464-016-5367-y. Epub 2016 Dec 6.


Directional and reoccurring sequence change in zoonotic RNA virus genomes visualized by time-series word count.

Wada Y, Wada K, Iwasaki Y, Kanaya S, Ikemura T.

Sci Rep. 2016 Nov 3;6:36197. doi: 10.1038/srep36197.


Critical Involvement of Environmental Carbon Dioxide Fixation to Drive Wax Ester Fermentation in Euglena.

Padermshoke A, Ogawa T, Nishio K, Nakazawa M, Nakamoto M, Okazawa A, Kanaya S, Arita M, Ohta D.

PLoS One. 2016 Sep 26;11(9):e0162827. doi: 10.1371/journal.pone.0162827. eCollection 2016.


100 °C Thermal Stability of Printable Perovskite Solar Cells Using Porous Carbon Counter Electrodes.

Baranwal AK, Kanaya S, Peiris TA, Mizuta G, Nishina T, Kanda H, Miyasaka T, Segawa H, Ito S.

ChemSusChem. 2016 Sep 22;9(18):2604-2608. doi: 10.1002/cssc.201600933. Epub 2016 Sep 15.


Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing.

Okada T, Takahashi H, Suzuki Y, Sugano S, Noji M, Kenmoku H, Toyota M, Kanaya S, Kawahara N, Asakawa Y, Sekita S.

Genom Data. 2016 Aug 4;10:4-11. doi: 10.1016/j.gdata.2016.08.003. eCollection 2016 Dec.


p38 MAP kinase is required for Wnt3a-mediated osterix expression independently of Wnt-LRP5/6-GSK3β signaling axis in dental follicle cells.

Sakisaka Y, Kanaya S, Nakamura T, Tamura M, Shimauchi H, Nemoto E.

Biochem Biophys Res Commun. 2016 Sep 16;478(2):527-32. doi: 10.1016/j.bbrc.2016.07.076. Epub 2016 Jul 19.


Light stability tests of CH3NH3PbI3 perovskite solar cells using porous carbon counter electrodes.

Ito S, Mizuta G, Kanaya S, Kanda H, Nishina T, Nakashima S, Fujisawa H, Shimizu M, Haruyama Y, Nishino H.

Phys Chem Chem Phys. 2016 Oct 21;18(39):27102-27108. Epub 2016 Jul 12.


Metabotropic glutamate receptor 1 promotes cementoblast proliferation via MAP kinase signaling pathways.

Kanaya S, Komatsu H, Shimauchi H, Nemoto E.

Connect Tissue Res. 2016 Sep;57(5):417-26. doi: 10.1080/03008207.2016.1195826. Epub 2016 Jun 3.


Cross-Modal Correspondence Among Vision, Audition, and Touch in Natural Objects: An Investigation of the Perceptual Properties of Wood.

Kanaya S, Kariya K, Fujisaki W.

Perception. 2016 Oct;45(10):1099-114. doi: 10.1177/0301006616652018. Epub 2016 Jun 2.


Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles.

Kibinge N, Ono N, Horie M, Sato T, Sugiura T, Altaf-Ul-Amin M, Saito A, Kanaya S.

J Biomed Inform. 2016 Jun;61:194-202. doi: 10.1016/j.jbi.2016.04.002. Epub 2016 Apr 8.


Selective regulation of pyrethrin biosynthesis by the specific blend of wound induced volatiles in Tanacetum cinerariifolium.

Sakamori K, Ono N, Ihara M, Suzuki H, Matsuura H, Tanaka K, Ohta D, Kanaya S, Matsuda K.

Plant Signal Behav. 2016;11(4):e1149675. doi: 10.1080/15592324.2016.1149675.


A Wearable Thermometry for Core Body Temperature Measurement and Its Experimental Verification.

Huang M, Tamura T, Tang Z, Chen W, Kanaya S.

IEEE J Biomed Health Inform. 2017 May;21(3):708-714. doi: 10.1109/JBHI.2016.2532933. Epub 2016 Feb 25.


Evaluation of a noninvasive deep body thermometer in measurement of specific positions.

Ming Huang, Tamura T, Wenxi Chen, Ono N, Sato T, Kanaya S.

Conf Proc IEEE Eng Med Biol Soc. 2015 Aug;2015:4395-8. doi: 10.1109/EMBC.2015.7319369.


Big Data and Network Biology 2015.

Kanaya S, Altaf-Ul-Amin M, Kiboi SK, Afendi FM.

Biomed Res Int. 2015;2015:604623. doi: 10.1155/2015/604623. Epub 2015 Nov 1. No abstract available.


Effects of Frequency Separation and Diotic/Dichotic Presentations on the Alternation Frequency Limits in Audition Derived from a Temporal Phase Discrimination Task.

Kanaya S, Fujisaki W, Nishida S, Furukawa S, Yokosawa K.

Perception. 2015 Feb;44(2):198-214. doi: 10.1068/p7753.


Informatics framework of traditional Sino-Japanese medicine (Kampo) unveiled by factor analysis.

Okada T, Afendi FM, Yamazaki M, Chida KN, Suzuki M, Kawai R, Kim M, Namiki T, Kanaya S, Saito K.

J Nat Med. 2016 Jan;70(1):107-14.


Development and mining of a volatile organic compound database.

Abdullah AA, Altaf-Ul-Amin M, Ono N, Sato T, Sugiura T, Morita AH, Katsuragi T, Muto A, Nishioka T, Kanaya S.

Biomed Res Int. 2015;2015:139254. doi: 10.1155/2015/139254. Epub 2015 Sep 30.


A Glimpse to Background and Characteristics of Major Molecular Biological Networks.

Altaf-Ul-Amin M, Katsuragi T, Sato T, Kanaya S.

Biomed Res Int. 2015;2015:540297. doi: 10.1155/2015/540297. Epub 2015 Sep 30. Review.


Wnt3a signaling induces murine dental follicle cells to differentiate into cementoblastic/osteoblastic cells via an osterix-dependent pathway.

Nemoto E, Sakisaka Y, Tsuchiya M, Tamura M, Nakamura T, Kanaya S, Shimonishi M, Shimauchi H.

J Periodontal Res. 2016 Apr;51(2):164-74. doi: 10.1111/jre.12294. Epub 2015 Jun 12.


Metabolomic characterization of a low phytic acid and high anti-oxidative cultivar of turmeric.

Tanaka K, Arita M, Li D, Ono N, Tezuka Y, Kanaya S.

Nat Prod Commun. 2015 Feb;10(2):329-34.


Metabolonote: a wiki-based database for managing hierarchical metadata of metabolome analyses.

Ara T, Enomoto M, Arita M, Ikeda C, Kera K, Yamada M, Nishioka T, Ikeda T, Nihei Y, Shibata D, Kanaya S, Sakurai N.

Front Bioeng Biotechnol. 2015 Apr 7;3:38. doi: 10.3389/fbioe.2015.00038. eCollection 2015.


Setting the stomach transection line based on anatomical landmarks in laparoscopic distal gastrectomy.

Hosogi H, Kanaya S, Nomura H, Kinjo Y, Tsubono M, Kii E.

J Gastric Cancer. 2015 Mar;15(1):53-7. doi: 10.5230/jgc.2015.15.1.53. Epub 2015 Mar 31.


The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress.

Takahashi H, Oshima T, Hobman JL, Doherty N, Clayton SR, Iqbal M, Hill PJ, Tobe T, Ogasawara N, Kanaya S, Stekel DJ.

J R Soc Interface. 2015 May 6;12(106). pii: 20150069. doi: 10.1098/rsif.2015.0069.


Enzymatic Activities of RNase H Domains of HIV-1 Reverse Transcriptase with Substrate Binding Domains of Bacterial RNases H1 and H2.

Permanasari ED, Yasukawa K, Kanaya S.

Mol Biotechnol. 2015 Jun;57(6):526-38. doi: 10.1007/s12033-015-9846-5.


Targeted Integration of RNA-Seq and Metabolite Data to Elucidate Curcuminoid Biosynthesis in Four Curcuma Species.

Li D, Ono N, Sato T, Sugiura T, Altaf-Ul-Amin M, Ohta D, Suzuki H, Arita M, Tanaka K, Ma Z, Kanaya S.

Plant Cell Physiol. 2015 May;56(5):843-51. doi: 10.1093/pcp/pcv008. Epub 2015 Jan 30.


Characterization of ultradian and circadian rhythms of core body temperature based on wavelet analysis.

Ming Huang, Tamura T, Wenxi Chen, Kitamura K, Nemoto T, Kanaya S.

Conf Proc IEEE Eng Med Biol Soc. 2014;2014:4220-3. doi: 10.1109/EMBC.2014.6944555.


A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network.

Sriyudthsak K, Sawada Y, Chiba Y, Yamashita Y, Kanaya S, Onouchi H, Fujiwara T, Naito S, Voit EO, Shiraishi F, Hirai MY.

BMC Syst Biol. 2014;8 Suppl 5:S4. doi: 10.1186/1752-0509-8-S5-S4. Epub 2014 Dec 12.


Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain.

Okano H, Kanaya E, Ozaki M, Angkawidjaja C, Kanaya S.

Protein Sci. 2015 Mar;24(3):408-19. doi: 10.1002/pro.2632. Epub 2015 Jan 13.


Evaluation of structural and thermophysical effects on the measurement accuracy of deep body thermometers based on dual-heat-flux method.

Huang M, Tamura T, Chen W, Kanaya S.

J Therm Biol. 2015 Jan;47:26-31. doi: 10.1016/j.jtherbio.2014.11.004. Epub 2014 Nov 11.


Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities.

Ohtana Y, Abdullah AA, Altaf-Ul-Amin M, Huang M, Ono N, Sato T, Sugiura T, Horai H, Nakamura Y, Morita Hirai A, Lange KW, Kibinge NK, Katsuragi T, Shirai T, Kanaya S.

Mol Inform. 2014 Dec;33(11-12):790-801. doi: 10.1002/minf.201400123. Epub 2014 Nov 24.


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