Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 66

1.

Selection and gene flow shape niche-associated variation in pheromone response.

Lee D, Zdraljevic S, Cook DE, Frézal L, Hsu JC, Sterken MG, Riksen JAG, Wang J, Kammenga JE, Braendle C, Félix MA, Schroeder FC, Andersen EC.

Nat Ecol Evol. 2019 Oct;3(10):1455-1463. doi: 10.1038/s41559-019-0982-3. Epub 2019 Sep 23.

PMID:
31548647
2.

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity.

Wang YA, Snoek BL, Sterken MG, Riksen JAG, Stastna JJ, Kammenga JE, Harvey SC.

BMC Genomics. 2019 Mar 20;20(1):232. doi: 10.1186/s12864-019-5597-1.

3.

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits.

Snoek BL, Volkers RJM, Nijveen H, Petersen C, Dirksen P, Sterken MG, Nakad R, Riksen JAG, Rosenstiel P, Stastna JJ, Braeckman BP, Harvey SC, Schulenburg H, Kammenga JE.

BMC Biol. 2019 Mar 12;17(1):24. doi: 10.1186/s12915-019-0642-8.

4.

Quantifying resilience of humans and other animals.

Scheffer M, Bolhuis JE, Borsboom D, Buchman TG, Gijzel SMW, Goulson D, Kammenga JE, Kemp B, van de Leemput IA, Levin S, Martin CM, Melis RJF, van Nes EH, Romero LM, Olde Rikkert MGM.

Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11883-11890. doi: 10.1073/pnas.1810630115. Epub 2018 Oct 29.

5.

Natural genetic variation in C. elegans identified genomic loci controlling metabolite levels.

Gao AW, Sterken MG, Uit de Bos J, van Creij J, Kamble R, Snoek BL, Kammenga JE, Houtkooper RH.

Genome Res. 2018 Sep;28(9):1296-1308. doi: 10.1101/gr.232322.117. Epub 2018 Aug 14.

6.

Genome-wide association mapping of the architecture of susceptibility to the root-knot nematode Meloidogyne incognita in Arabidopsis thaliana.

Warmerdam S, Sterken MG, van Schaik C, Oortwijn MEP, Sukarta OCA, Lozano-Torres JL, Dicke M, Helder J, Kammenga JE, Goverse A, Bakker J, Smant G.

New Phytol. 2018 Apr;218(2):724-737. doi: 10.1111/nph.15034. Epub 2018 Feb 22.

7.

Rictor/TORC2 mediates gut-to-brain signaling in the regulation of phenotypic plasticity in C. elegans.

O'Donnell MP, Chao PH, Kammenga JE, Sengupta P.

PLoS Genet. 2018 Feb 7;14(2):e1007213. doi: 10.1371/journal.pgen.1007213. eCollection 2018 Feb.

8.

Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans.

Jovic K, Sterken MG, Grilli J, Bevers RPJ, Rodriguez M, Riksen JAG, Allesina S, Kammenga JE, Snoek LB.

PLoS One. 2017 Dec 11;12(12):e0189445. doi: 10.1371/journal.pone.0189445. eCollection 2017.

9.

Why do Individuals Differ in Viral Susceptibility? A Story Told by Model Organisms.

van Sluijs L, Pijlman GP, Kammenga JE.

Viruses. 2017 Sep 30;9(10). pii: E284. doi: 10.3390/v9100284. Review.

10.

Forward and reverse genetics approaches to uncover metabolic aging pathways in Caenorhabditis elegans.

Gao AW, Uit de Bos J, Sterken MG, Kammenga JE, Smith RL, Houtkooper RH.

Biochim Biophys Acta Mol Basis Dis. 2018 Sep;1864(9 Pt A):2697-2706. doi: 10.1016/j.bbadis.2017.09.006. Epub 2017 Sep 15. Review.

11.

Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans.

Sterken MG, van Bemmelen van der Plaat L, Riksen JAG, Rodriguez M, Schmid T, Hajnal A, Kammenga JE, Snoek BL.

G3 (Bethesda). 2017 Sep 7;7(9):3185-3193. doi: 10.1534/g3.117.1120.

12.

Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.

Snoek BL, Sterken MG, Bevers RPJ, Volkers RJM, Van't Hof A, Brenchley R, Riksen JAG, Cossins A, Kammenga JE.

BMC Genomics. 2017 Jun 29;18(1):500. doi: 10.1186/s12864-017-3899-8.

13.

Genetic variation in neurodegenerative diseases and its accessibility in the model organism Caenorhabditis elegans.

Wang YA, Kammenga JE, Harvey SC.

Hum Genomics. 2017 May 25;11(1):12. doi: 10.1186/s40246-017-0108-4. Review.

14.

The background puzzle: how identical mutations in the same gene lead to different disease symptoms.

Kammenga JE.

FEBS J. 2017 Oct;284(20):3362-3373. doi: 10.1111/febs.14080. Epub 2017 May 10. Review.

15.

reGenotyper: Detecting mislabeled samples in genetic data.

Zych K, Snoek BL, Elvin M, Rodriguez M, Van der Velde KJ, Arends D, Westra HJ, Swertz MA, Poulin G, Kammenga JE, Breitling R, Jansen RC, Li Y.

PLoS One. 2017 Feb 13;12(2):e0171324. doi: 10.1371/journal.pone.0171324. eCollection 2017.

16.

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.

17.

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length.

Cook DE, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix MA, Lee J, Andersen EC.

Genetics. 2016 Sep;204(1):371-83. doi: 10.1534/genetics.116.191148. Epub 2016 Jul 22.

18.

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1.

Nakad R, Snoek LB, Yang W, Ellendt S, Schneider F, Mohr TG, Rösingh L, Masche AC, Rosenstiel PC, Dierking K, Kammenga JE, Schulenburg H.

BMC Genomics. 2016 Apr 11;17:280. doi: 10.1186/s12864-016-2603-8.

19.

Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways.

Singh KD, Roschitzki B, Snoek LB, Grossmann J, Zheng X, Elvin M, Kamkina P, Schrimpf SP, Poulin GB, Kammenga JE, Hengartner MO.

PLoS One. 2016 Mar 17;11(3):e0149418. doi: 10.1371/journal.pone.0149418. eCollection 2016.

20.

Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.

Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE.

Mol Cell Proteomics. 2016 May;15(5):1670-80. doi: 10.1074/mcp.M115.052548. Epub 2016 Mar 4.

21.

Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans.

Stastna JJ, Snoek LB, Kammenga JE, Harvey SC.

Sci Rep. 2015 Nov 5;5:16259. doi: 10.1038/srep16259.

22.

On predicting regulatory genes by analysis of functional networks in C. elegans.

Valba OV, Nechaev SK, Sterken MG, Snoek LB, Kammenga JE, Vasieva OO.

BioData Min. 2015 Nov 2;8:33. doi: 10.1186/s13040-015-0066-0. eCollection 2015.

23.

Caenorhabditis elegans DAF-16/FOXO transcription factor and its mammalian homologs associate with age-related disease.

Hesp K, Smant G, Kammenga JE.

Exp Gerontol. 2015 Dec;72:1-7. doi: 10.1016/j.exger.2015.09.006. Epub 2015 Sep 9. Review.

24.

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.

Thompson OA, Snoek LB, Nijveen H, Sterken MG, Volkers RJ, Brenchley R, Van't Hof A, Bevers RP, Cossins AR, Yanai I, Hajnal A, Schmid T, Perkins JD, Spencer D, Kruglyak L, Andersen EC, Moerman DG, Hillier LW, Kammenga JE, Waterston RH.

Genetics. 2015 Jul;200(3):975-89. doi: 10.1534/genetics.115.175950. Epub 2015 May 19.

25.

The laboratory domestication of Caenorhabditis elegans.

Sterken MG, Snoek LB, Kammenga JE, Andersen EC.

Trends Genet. 2015 May;31(5):224-31. doi: 10.1016/j.tig.2015.02.009. Epub 2015 Mar 21. Review.

26.

Nematode endogenous small RNA pathways.

Hoogstrate SW, Volkers RJ, Sterken MG, Kammenga JE, Snoek LB.

Worm. 2014 Mar 5;3:e28234. doi: 10.4161/worm.28234. eCollection 2014. Review.

27.

Widespread genomic incompatibilities in Caenorhabditis elegans.

Snoek LB, Orbidans HE, Stastna JJ, Aartse A, Rodriguez M, Riksen JA, Kammenga JE, Harvey SC.

G3 (Bethesda). 2014 Aug 15;4(10):1813-23. doi: 10.1534/g3.114.013151.

28.

Worm variation made accessible: Take your shopping cart to store, link, and investigate!

Snoek LB, Joeri van der Velde K, Li Y, Jansen RC, Swertz MA, Kammenga JE.

Worm. 2014 Jan 1;3(1):e28357. doi: 10.4161/worm.28357. Epub 2014 Mar 6.

29.

Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans.

van der Bent ML, Sterken MG, Volkers RJ, Riksen JA, Schmid T, Hajnal A, Kammenga JE, Snoek LB.

Sci Rep. 2014 May 13;4:4926. doi: 10.1038/srep04926.

30.

A heritable antiviral RNAi response limits Orsay virus infection in Caenorhabditis elegans N2.

Sterken MG, Snoek LB, Bosman KJ, Daamen J, Riksen JA, Bakker J, Pijlman GP, Kammenga JE.

PLoS One. 2014 Feb 24;9(2):e89760. doi: 10.1371/journal.pone.0089760. eCollection 2014.

31.

A rapid and massive gene expression shift marking adolescent transition in C. elegans.

Snoek LB, Sterken MG, Volkers RJ, Klatter M, Bosman KJ, Bevers RP, Riksen JA, Smant G, Cossins AR, Kammenga JE.

Sci Rep. 2014 Jan 28;4:3912. doi: 10.1038/srep03912.

32.

WormQTLHD--a web database for linking human disease to natural variation data in C. elegans.

van der Velde KJ, de Haan M, Zych K, Arends D, Snoek LB, Kammenga JE, Jansen RC, Swertz MA, Li Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D794-801. doi: 10.1093/nar/gkt1044. Epub 2013 Nov 11.

33.

Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations.

Volkers RJ, Snoek LB, Hubar CJ, Coopman R, Chen W, Yang W, Sterken MG, Schulenburg H, Braeckman BP, Kammenga JE.

BMC Biol. 2013 Aug 19;11:93. doi: 10.1186/1741-7007-11-93.

34.

Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans.

Green JW, Snoek LB, Kammenga JE, Harvey SC.

Heredity (Edinb). 2013 Oct;111(4):306-13. doi: 10.1038/hdy.2013.50. Epub 2013 May 29.

35.

Worms under stress: C. elegans stress response and its relevance to complex human disease and aging.

Rodriguez M, Snoek LB, De Bono M, Kammenga JE.

Trends Genet. 2013 Jun;29(6):367-74. doi: 10.1016/j.tig.2013.01.010. Epub 2013 Feb 18. Review.

PMID:
23428113
36.

WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.

Snoek LB, Van der Velde KJ, Arends D, Li Y, Beyer A, Elvin M, Fisher J, Hajnal A, Hengartner MO, Poulin GB, Rodriguez M, Schmid T, Schrimpf S, Xue F, Jansen RC, Kammenga JE, Swertz MA.

Nucleic Acids Res. 2013 Jan;41(Database issue):D738-43. doi: 10.1093/nar/gks1124. Epub 2012 Nov 24.

37.

Aging Uncouples Heritability and Expression-QTL in Caenorhabditis elegans.

Viñuela A, Snoek LB, Riksen JA, Kammenga JE.

G3 (Bethesda). 2012 May;2(5):597-605. doi: 10.1534/g3.112.002212. Epub 2012 May 1.

38.

Genetic variation for stress-response hormesis in C. elegans lifespan.

Rodriguez M, Snoek LB, Riksen JA, Bevers RP, Kammenga JE.

Exp Gerontol. 2012 Aug;47(8):581-7. doi: 10.1016/j.exger.2012.05.005. Epub 2012 May 14.

PMID:
22613270
39.

A fitness assay for comparing RNAi effects across multiple C. elegans genotypes.

Elvin M, Snoek LB, Frejno M, Klemstein U, Kammenga JE, Poulin GB.

BMC Genomics. 2011 Oct 17;12:510. doi: 10.1186/1471-2164-12-510.

40.

Gene expression modifications by temperature-toxicants interactions in Caenorhabditis elegans.

Viñuela A, Snoek LB, Riksen JA, Kammenga JE.

PLoS One. 2011;6(9):e24676. doi: 10.1371/journal.pone.0024676. Epub 2011 Sep 9.

41.

Genome-wide gene expression analysis in response to organophosphorus pesticide chlorpyrifos and diazinon in C. elegans.

Viñuela A, Snoek LB, Riksen JA, Kammenga JE.

PLoS One. 2010 Aug 16;5(8):e12145. doi: 10.1371/journal.pone.0012145.

42.

Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegans.

Li Y, Breitling R, Snoek LB, van der Velde KJ, Swertz MA, Riksen J, Jansen RC, Kammenga JE.

Genetics. 2010 Sep;186(1):405-10. doi: 10.1534/genetics.110.119677. Epub 2010 Jul 6.

43.

Genome-wide gene expression regulation as a function of genotype and age in C. elegans.

Viñuela A, Snoek LB, Riksen JA, Kammenga JE.

Genome Res. 2010 Jul;20(7):929-37. doi: 10.1101/gr.102160.109. Epub 2010 May 20.

44.

The Effects of Founding Events and Agricultural Practices on the Genetic Structure of Three Metapopulations of Globodera pallida.

Folkertsma RT, van Koert P, van der Voort JN, de Groot KE, Kammenga JE, Helder J, Bakker J.

Phytopathology. 2001 Aug;91(8):753-8. doi: 10.1094/PHYTO.2001.91.8.753.

45.

Beyond induced mutants: using worms to study natural variation in genetic pathways.

Kammenga JE, Phillips PC, De Bono M, Doroszuk A.

Trends Genet. 2008 Apr;24(4):178-85. doi: 10.1016/j.tig.2008.01.001. Epub 2008 Mar 5. Review.

PMID:
18325626
46.

Rapid divergence of genetic variance-covariance matrix within a natural population.

Doroszuk A, Wojewodzic MW, Gort G, Kammenga JE.

Am Nat. 2008 Mar;171(3):291-304. doi: 10.1086/527478.

PMID:
18271724
47.

Type of disturbance and ecological history determine structural stability.

Van der Wurff AW, Kools SA, Boivin ME, Van den Brink PJ, Van Megen HH, Riksen JA, Doroszuk A, Kammenga JE.

Ecol Appl. 2007 Jan;17(1):190-202.

PMID:
17479845
48.

A Caenorhabditis elegans wild type defies the temperature-size rule owing to a single nucleotide polymorphism in tra-3.

Kammenga JE, Doroszuk A, Riksen JA, Hazendonk E, Spiridon L, Petrescu AJ, Tijsterman M, Plasterk RH, Bakker J.

PLoS Genet. 2007 Mar 2;3(3):e34. Epub 2007 Jan 9.

49.

Microarray challenges in ecology.

Kammenga JE, Herman MA, Ouborg NJ, Johnson L, Breitling R.

Trends Ecol Evol. 2007 May;22(5):273-9. Epub 2007 Feb 12. Review.

PMID:
17296243
50.

Physiological modes of action of toxic chemicals in the nematode Acrobeloides nanus.

Alvarez OA, Jager T, Redondo EM, Kammenga JE.

Environ Toxicol Chem. 2006 Dec;25(12):3230-7.

PMID:
17220093

Supplemental Content

Loading ...
Support Center