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Items: 1 to 50 of 51

1.

tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, Rando OJ, Kamakaka RT.

Mol Cell Biol. 2019 Apr 2;39(8). pii: e00432-18. doi: 10.1128/MCB.00432-18. Print 2019 Apr 15.

2.

Methods to Study the Atypical Roles of DNA Repair and SMC Proteins in Gene Silencing.

Peterson MR, Hamdani O, Kamakaka RT.

Methods Mol Biol. 2017;1515:151-176.

PMID:
27797079
3.

Heterochromatin formation via recruitment of DNA repair proteins.

Kirkland JG, Peterson MR, Still CD 2nd, Brueggeman L, Dhillon N, Kamakaka RT.

Mol Biol Cell. 2015 Apr 1;26(7):1395-410. doi: 10.1091/mbc.E14-09-1413. Epub 2015 Jan 28.

4.

Dyskerin, tRNA genes, and condensin tether pericentric chromatin to the spindle axis in mitosis.

Snider CE, Stephens AD, Kirkland JG, Hamdani O, Kamakaka RT, Bloom K.

J Cell Biol. 2014 Oct 27;207(2):189-99. doi: 10.1083/jcb.201405028. Epub 2014 Oct 20.

5.

Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins.

Kirkland JG, Kamakaka RT.

J Cell Biol. 2013 Jun 10;201(6):809-26. doi: 10.1083/jcb.201211105. Epub 2013 Jun 3.

6.

TFIIIC bound DNA elements in nuclear organization and insulation.

Kirkland JG, Raab JR, Kamakaka RT.

Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):418-24. doi: 10.1016/j.bbagrm.2012.09.006. Epub 2012 Sep 21. Review.

7.

Human tRNA genes function as chromatin insulators.

Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT.

EMBO J. 2012 Jan 18;31(2):330-50. doi: 10.1038/emboj.2011.406. Epub 2011 Nov 15.

8.

Nucleoporin mediated nuclear positioning and silencing of HMR.

Ruben GJ, Kirkland JG, MacDonough T, Chen M, Dubey RN, Gartenberg MR, Kamakaka RT.

PLoS One. 2011;6(7):e21923. doi: 10.1371/journal.pone.0021923. Epub 2011 Jul 19.

9.

The human Pol III transcriptome and gene information flow.

Noma K, Kamakaka RT.

Nat Struct Mol Biol. 2010 May;17(5):539-41. doi: 10.1038/nsmb0510-539. No abstract available.

10.

Insulators and promoters: closer than we think.

Raab JR, Kamakaka RT.

Nat Rev Genet. 2010 Jun;11(6):439-46. doi: 10.1038/nrg2765. Epub 2010 May 5. Review.

11.

tRNA insulator function: insight into inheritance of transcription states?

Kirkland JG, Kamakaka RT.

Epigenetics. 2010 Feb 16;5(2):96-9. Epub 2010 Feb 27. Review.

12.

DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator.

Dhillon N, Raab J, Guzzo J, Szyjka SJ, Gangadharan S, Aparicio OM, Andrews B, Kamakaka RT.

EMBO J. 2009 Sep 2;28(17):2583-600. doi: 10.1038/emboj.2009.198. Epub 2009 Jul 23.

13.

Transcription independent insulation at TFIIIC-dependent insulators.

Valenzuela L, Dhillon N, Kamakaka RT.

Genetics. 2009 Sep;183(1):131-48. doi: 10.1534/genetics.109.106203. Epub 2009 Jul 13.

14.

The DNA end-binding protein Ku regulates silencing at the internal HML and HMR loci in Saccharomyces cerevisiae.

Vandre CL, Kamakaka RT, Rivier DH.

Genetics. 2008 Nov;180(3):1407-18. doi: 10.1534/genetics.108.094490. Epub 2008 Sep 14.

15.

Schizosaccharomyces pombe Hst4 functions in DNA damage response by regulating histone H3 K56 acetylation.

Haldar D, Kamakaka RT.

Eukaryot Cell. 2008 May;7(5):800-13. doi: 10.1128/EC.00379-07. Epub 2008 Mar 14.

16.

In vitro transcription.

Kamakaka RT, Kraus WL.

Curr Protoc Cell Biol. 2001 May;Chapter 11:Unit 11.6. doi: 10.1002/0471143030.cb1106s02.

PMID:
18228311
17.

Long-range communication between the silencers of HMR.

Valenzuela L, Dhillon N, Dubey RN, Gartenberg MR, Kamakaka RT.

Mol Cell Biol. 2008 Mar;28(6):1924-35. doi: 10.1128/MCB.01647-07. Epub 2008 Jan 14.

18.

Chromatin insulators.

Valenzuela L, Kamakaka RT.

Annu Rev Genet. 2006;40:107-38. Review.

PMID:
16953792
19.

tRNA genes as chromatin barriers.

Haldar D, Kamakaka RT.

Nat Struct Mol Biol. 2006 Mar;13(3):192-3. No abstract available.

PMID:
16518388
20.

H2A.Z functions to regulate progression through the cell cycle.

Dhillon N, Oki M, Szyjka SJ, Aparicio OM, Kamakaka RT.

Mol Cell Biol. 2006 Jan;26(2):489-501.

21.

Construction and characterization of a series of vectors for Schizosaccharomyces pombe.

Adams C, Haldar D, Kamakaka RT.

Yeast. 2005 Dec;22(16):1307-14.

22.

Analyses of SUM1-1-mediated long-range repression.

Valenzuela L, Gangadharan S, Kamakaka RT.

Genetics. 2006 Jan;172(1):99-112. Epub 2005 Nov 4.

23.

Barrier function at HMR.

Oki M, Kamakaka RT.

Mol Cell. 2005 Sep 2;19(5):707-16.

24.

Histone variants: deviants?

Kamakaka RT, Biggins S.

Genes Dev. 2005 Feb 1;19(3):295-310. Review.

25.

Purification of Sir2 proteins from yeast.

Gangadharan S, Ghidelli S, Kamakaka RT.

Methods Enzymol. 2004;377:234-54. No abstract available.

PMID:
14979029
26.

Barrier proteins remodel and modify chromatin to restrict silenced domains.

Oki M, Valenzuela L, Chiba T, Ito T, Kamakaka RT.

Mol Cell Biol. 2004 Mar;24(5):1956-67.

27.

Heterochromatin: proteins in flux lead to stable repression.

Kamakaka RT.

Curr Biol. 2003 Apr 15;13(8):R317-9. Review.

28.

Chromatin: a connection between loops and barriers?

Kamakaka RT.

Curr Biol. 2002 Aug 6;12(15):R535-7.

29.

Blockers and barriers to transcription: competing activities?

Oki M, Kamakaka RT.

Curr Opin Cell Biol. 2002 Jun;14(3):299-304. Review.

PMID:
12067651
30.

Braking the silence: how heterochromatic gene repression is stopped in its tracks.

Donze D, Kamakaka RT.

Bioessays. 2002 Apr;24(4):344-9. Review.

PMID:
11948620
31.

Breaking through to the other side: silencers and barriers.

Dhillon N, Kamakaka RT.

Curr Opin Genet Dev. 2002 Apr;12(2):188-92. Review.

PMID:
11893492
32.

Sir2p exists in two nucleosome-binding complexes with distinct deacetylase activities.

Ghidelli S, Donze D, Dhillon N, Kamakaka RT.

EMBO J. 2001 Aug 15;20(16):4522-35.

34.
35.

The RCAF complex mediates chromatin assembly during DNA replication and repair.

Tyler JK, Adams CR, Chen SR, Kobayashi R, Kamakaka RT, Kadonaga JT.

Nature. 1999 Dec 2;402(6761):555-60.

PMID:
10591219
36.
37.

Chromatin assembly: biochemical identities and genetic redundancy.

Adams CR, Kamakaka RT.

Curr Opin Genet Dev. 1999 Apr;9(2):185-90. Review.

PMID:
10322140
38.

The boundaries of the silenced HMR domain in Saccharomyces cerevisiae.

Donze D, Adams CR, Rine J, Kamakaka RT.

Genes Dev. 1999 Mar 15;13(6):698-708.

39.
40.

Silencers and locus control regions: opposite sides of the same coin.

Kamakaka RT.

Trends Biochem Sci. 1997 Apr;22(4):124-8. Review.

PMID:
9149531
41.

The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein.

Tyler JK, Bulger M, Kamakaka RT, Kobayashi R, Kadonaga JT.

Mol Cell Biol. 1996 Nov;16(11):6149-59.

42.

Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1.

Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT.

Mol Cell Biol. 1996 Mar;16(3):810-7.

43.

Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein.

Bulger M, Ito T, Kamakaka RT, Kadonaga JT.

Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11726-30.

44.

ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates.

Pazin MJ, Kamakaka RT, Kadonaga JT.

Science. 1994 Dec 23;266(5193):2007-11.

PMID:
7801129
45.

Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro.

Kamakaka RT, Kaufman PD, Stillman B, Mitsis PG, Kadonaga JT.

Mol Cell Biol. 1994 Aug;14(8):5114-22.

46.

Role of chromatin structure in the regulation of transcription by RNA polymerase II.

Paranjape SM, Kamakaka RT, Kadonaga JT.

Annu Rev Biochem. 1994;63:265-97. Review. No abstract available.

PMID:
7979240
47.

The soluble nuclear fraction, a highly efficient transcription extract from Drosophila embryos.

Kamakaka RT, Kadonaga JT.

Methods Cell Biol. 1994;44:225-35. Review.

PMID:
7707954
48.
49.

Biochemical analysis of the role of chromatin structure in the regulation of transcription by RNA polymerase II.

Kamakaka RT, Kadonaga JT.

Cold Spring Harb Symp Quant Biol. 1993;58:205-12. No abstract available.

PMID:
7956031
50.

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