Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 82

1.

Genome-scale evaluation of core one-carbon metabolism in gammaproteobacterial methanotrophs grown on methane and methanol.

Nguyen AD, Park JY, Hwang IY, Hamilton R, Kalyuzhnaya MG, Kim D, Lee EY.

Metab Eng. 2019 Oct 15;57:1-12. doi: 10.1016/j.ymben.2019.10.004. [Epub ahead of print]

PMID:
31626985
2.

Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20ZR.

Akberdin IR, Collins DA, Hamilton R, Oshchepkov DY, Shukla AK, Nicora CD, Nakayasu ES, Adkins JN, Kalyuzhnaya MG.

Front Microbiol. 2018 Nov 27;9:2735. doi: 10.3389/fmicb.2018.02735. eCollection 2018.

3.

Navigating methane metabolism: Enzymes, compartments, and networks.

Collins DA, Kalyuzhnaya MG.

Methods Enzymol. 2018;613:349-383. doi: 10.1016/bs.mie.2018.10.010. Epub 2018 Nov 24.

PMID:
30509473
4.

Biogas Biocatalysis: Methanotrophic Bacterial Cultivation, Metabolite Profiling, and Bioconversion to Lactic Acid.

Henard CA, Franklin TG, Youhenna B, But S, Alexander D, Kalyuzhnaya MG, Guarnieri MT.

Front Microbiol. 2018 Oct 31;9:2610. doi: 10.3389/fmicb.2018.02610. eCollection 2018.

5.

Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2,3-butanediol production from methane.

Nguyen AD, Hwang IY, Lee OK, Kim D, Kalyuzhnaya MG, Mariyana R, Hadiyati S, Kim MS, Lee EY.

Metab Eng. 2018 May;47:323-333. doi: 10.1016/j.ymben.2018.04.010. Epub 2018 Apr 16.

PMID:
29673960
6.

Author Correction: Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach.

Akberdin IR, Thompson M, Hamilton R, Desai N, Alexander D, Henard CA, Guarnieri MT, Kalyuzhnaya MG.

Sci Rep. 2018 Mar 14;8(1):4753. doi: 10.1038/s41598-018-23088-w.

7.

Current Trends in Methylotrophy.

Chistoserdova L, Kalyuzhnaya MG.

Trends Microbiol. 2018 Aug;26(8):703-714. doi: 10.1016/j.tim.2018.01.011. Epub 2018 Feb 19. Review.

PMID:
29471983
8.

Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach.

Akberdin IR, Thompson M, Hamilton R, Desai N, Alexander D, Henard CA, Guarnieri MT, Kalyuzhnaya MG.

Sci Rep. 2018 Feb 6;8(1):2512. doi: 10.1038/s41598-018-20574-z. Erratum in: Sci Rep. 2018 Mar 14;8(1):4753.

9.

Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.

Frindte K, Kalyuzhnaya MG, Bringel F, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Svenning MM, Trotsenko YA, Vuilleumier S, Woyke T, Knief C.

Genome Announc. 2017 Aug 17;5(33). pii: e00526-17. doi: 10.1128/genomeA.00526-17.

10.

Methanotroph-derived bacteriohopanepolyol signatures as a function of temperature related growth, survival, cell death and preservation in the geological record.

Osborne KA, Gray ND, Sherry A, Leary P, Mejeha O, Bischoff J, Rush D, Sidgwick FR, Birgel D, Kalyuzhnaya MG, Talbot HM.

Environ Microbiol Rep. 2017 Oct;9(5):492-500. doi: 10.1111/1758-2229.12570. Epub 2017 Oct 2.

PMID:
28772060
11.

Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1).

Demidenko A, Akberdin IR, Allemann M, Allen EE, Kalyuzhnaya MG.

Front Microbiol. 2017 Jan 10;7:2167. doi: 10.3389/fmicb.2016.02167. eCollection 2016.

12.

Bioconversion of methane to lactate by an obligate methanotrophic bacterium.

Henard CA, Smith H, Dowe N, Kalyuzhnaya MG, Pienkos PT, Guarnieri MT.

Sci Rep. 2016 Feb 23;6:21585. doi: 10.1038/srep21585.

13.

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Svenning MM, Stein LY, Kyrpides N, Shapiro N, Woyke T, Bringel F, Vuilleumier S, DiSpirito AA, Kalyuzhnaya MG.

Genome Announc. 2016 Jan 21;4(1). pii: e01629-15. doi: 10.1128/genomeA.01629-15.

14.

Genome-scale metabolic reconstructions and theoretical investigation of methane conversion in Methylomicrobium buryatense strain 5G(B1).

de la Torre A, Metivier A, Chu F, Laurens LM, Beck DA, Pienkos PT, Lidstrom ME, Kalyuzhnaya MG.

Microb Cell Fact. 2015 Nov 25;14:188. doi: 10.1186/s12934-015-0377-3.

15.

Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

Smalley NE, Taipale S, De Marco P, Doronina NV, Kyrpides N, Shapiro N, Woyke T, Kalyuzhnaya MG.

Int J Syst Evol Microbiol. 2015 Jul;65(7):2227-33. doi: 10.1099/ijs.0.000190.

PMID:
26231539
16.

Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.

Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF.

Genome Announc. 2015 Jun 11;3(3). pii: e00644-15. doi: 10.1128/genomeA.00644-15.

17.

Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.

Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Bringel F, Vuilleumier S, Svenning MM, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG.

Genome Announc. 2015 Jun 4;3(3). pii: e00515-15. doi: 10.1128/genomeA.00515-15.

18.

Metabolic engineering in methanotrophic bacteria.

Kalyuzhnaya MG, Puri AW, Lidstrom ME.

Metab Eng. 2015 May;29:142-152. doi: 10.1016/j.ymben.2015.03.010. Epub 2015 Mar 28. Review.

PMID:
25825038
19.

Draft genome sequences of gammaproteobacterial methanotrophs isolated from lake washington sediment.

Kalyuzhnaya MG, Lamb AE, McTaggart TL, Oshkin IY, Shapiro N, Woyke T, Chistoserdova L.

Genome Announc. 2015 Mar 12;3(2). pii: e00103-15. doi: 10.1128/genomeA.00103-15.

20.

Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase.

Dedysh SN, Naumoff DG, Vorobev AV, Kyrpides N, Woyke T, Shapiro N, Crombie AT, Murrell JC, Kalyuzhnaya MG, Smirnova AV, Dunfield PF.

Genome Announc. 2015 Mar 5;3(2). pii: e01555-14. doi: 10.1128/genomeA.01555-14.

21.

Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates.

Beck DA, McTaggart TL, Setboonsarng U, Vorobev A, Goodwin L, Shapiro N, Woyke T, Kalyuzhnaya MG, Lidstrom ME, Chistoserdova L.

Environ Microbiol. 2015 Mar;17(3):547-54. doi: 10.1111/1462-2920.12736. Epub 2015 Feb 11.

PMID:
25683159
22.

Sucrose metabolism in halotolerant methanotroph Methylomicrobium alcaliphilum 20Z.

But SY, Khmelenina VN, Reshetnikov AS, Mustakhimov II, Kalyuzhnaya MG, Trotsenko YA.

Arch Microbiol. 2015 Apr;197(3):471-80. doi: 10.1007/s00203-015-1080-9. Epub 2015 Jan 11.

PMID:
25577257
23.

C₁-Pathways in Methyloversatilis universalis FAM5: Genome Wide Gene Expression and Mutagenesis Studies.

Good NM, Lamb A, Beck DA, Martinez-Gomez NC, Kalyuzhnaya MG.

Microorganisms. 2015 Apr 9;3(2):175-97. doi: 10.3390/microorganisms3020175.

24.

Genomics of Methylotrophy in Gram-Positive Methylamine-Utilizing Bacteria.

McTaggart TL, Beck DA, Setboonsarng U, Shapiro N, Woyke T, Lidstrom ME, Kalyuzhnaya MG, Chistoserdova L.

Microorganisms. 2015 Mar 20;3(1):94-112. doi: 10.3390/microorganisms3010094.

25.

Genetic tools for the industrially promising methanotroph Methylomicrobium buryatense.

Puri AW, Owen S, Chu F, Chavkin T, Beck DA, Kalyuzhnaya MG, Lidstrom ME.

Appl Environ Microbiol. 2015 Mar;81(5):1775-81. doi: 10.1128/AEM.03795-14. Epub 2014 Dec 29.

26.

Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.

Oshkin IY, Beck DA, Lamb AE, Tchesnokova V, Benuska G, McTaggart TL, Kalyuzhnaya MG, Dedysh SN, Lidstrom ME, Chistoserdova L.

ISME J. 2015 May;9(5):1119-29. doi: 10.1038/ismej.2014.203. Epub 2014 Oct 21.

27.

The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes.

Beck DA, McTaggart TL, Setboonsarng U, Vorobev A, Kalyuzhnaya MG, Ivanova N, Goodwin L, Woyke T, Lidstrom ME, Chistoserdova L.

PLoS One. 2014 Jul 24;9(7):e102458. doi: 10.1371/journal.pone.0102458. eCollection 2014.

28.

[Highly efficient methane assimilation through Embden-Meyerhof-Parnas pathway in Methylomicrobium alcaliphilum 20Z].

Cui J, Yao L, Sun X, Kalyuzhnaya MG, Yang S.

Sheng Wu Gong Cheng Xue Bao. 2014 Jan;30(1):43-54. Chinese.

PMID:
24818478
29.

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium.

Kalyuzhnaya MG, Yang S, Rozova ON, Smalley NE, Clubb J, Lamb A, Gowda GA, Raftery D, Fu Y, Bringel F, Vuilleumier S, Beck DA, Trotsenko YA, Khmelenina VN, Lidstrom ME.

Nat Commun. 2013;4:2785. doi: 10.1038/ncomms3785.

PMID:
24302011
30.

Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation.

Vorobev A, Beck DA, Kalyuzhnaya MG, Lidstrom ME, Chistoserdova L.

PeerJ. 2013 Jul 25;1:e115. doi: 10.7717/peerj.115. Print 2013.

31.

Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.

Khmelenina VN, Beck DA, Munk C, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Scholz M, Teshima H, Xu Y, Chain P, Bringel F, Vuilleumier S, Dispirito A, Dunfield P, Jetten MS, Klotz MG, Knief C, Murrell JC, Op den Camp HJ, Sakai Y, Semrau J, Svenning M, Stein LY, Trotsenko YA, Kalyuzhnaya MG.

Genome Announc. 2013 Jun 27;1(4). pii: e00053-13. doi: 10.1128/genomeA.00053-13.

32.

A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.

Beck DA, Kalyuzhnaya MG, Malfatti S, Tringe SG, Glavina Del Rio T, Ivanova N, Lidstrom ME, Chistoserdova L.

PeerJ. 2013 Feb 19;1:e23. doi: 10.7717/peerj.23. Print 2013.

33.

Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.

Kits KD, Kalyuzhnaya MG, Klotz MG, Jetten MS, Op den Camp HJ, Vuilleumier S, Bringel F, Dispirito AA, Murrell JC, Bruce D, Cheng JF, Copeland A, Goodwin L, Hauser L, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T, Zeytun A, Stein LY.

Genome Announc. 2013 Apr 11;1(2):e0017013. doi: 10.1128/genomeA.00170-13.

34.

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics and 13C-Labeling Study.

Yang S, Matsen JB, Konopka M, Green-Saxena A, Clubb J, Sadilek M, Orphan VJ, Beck D, Kalyuzhnaya MG.

Front Microbiol. 2013 Apr 3;4:70. doi: 10.3389/fmicb.2013.00070. eCollection 2013.

35.

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part I: Transcriptomic Study.

Matsen JB, Yang S, Stein LY, Beck D, Kalyuzhnaya MG.

Front Microbiol. 2013 Apr 3;4:40. doi: 10.3389/fmicb.2013.00040. eCollection 2013.

36.

Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants.

Mustakhimov I, Kalyuzhnaya MG, Lidstrom ME, Chistoserdova L.

J Bacteriol. 2013 May;195(10):2207-11. doi: 10.1128/JB.00069-13. Epub 2013 Mar 8.

37.

Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

Khadem AF, Wieczorek AS, Pol A, Vuilleumier S, Harhangi HR, Dunfield PF, Kalyuzhnaya MG, Murrell JC, Francoijs KJ, Stunnenberg HG, Stein LY, DiSpirito AA, Semrau JD, Lajus A, Médigue C, Klotz MG, Jetten MS, Op den Camp HJ.

J Bacteriol. 2012 Jul;194(14):3729-30. doi: 10.1128/JB.00501-12.

38.

Methanotrophic communities of Saanich Inlet: a microcosm perspective.

Sauter LM, Latypova E, Smalley NE, Lidstrom ME, Hallam S, Kalyuzhnaya MG.

Syst Appl Microbiol. 2012 May;35(3):198-203. doi: 10.1016/j.syapm.2011.10.006. Epub 2012 Mar 9.

PMID:
22406542
39.

Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.

Vuilleumier S, Khmelenina VN, Bringel F, Reshetnikov AS, Lajus A, Mangenot S, Rouy Z, Op den Camp HJ, Jetten MS, Dispirito AA, Dunfield P, Klotz MG, Semrau JD, Stein LY, Barbe V, Médigue C, Trotsenko YA, Kalyuzhnaya MG.

J Bacteriol. 2012 Jan;194(2):551-2. doi: 10.1128/JB.06392-11.

40.

Epiphytic pink-pigmented methylotrophic bacteria enhance germination and seedling growth of wheat (Triticum aestivum) by producing phytohormone.

Meena KK, Kumar M, Kalyuzhnaya MG, Yandigeri MS, Singh DP, Saxena AK, Arora DK.

Antonie Van Leeuwenhoek. 2012 May;101(4):777-86. doi: 10.1007/s10482-011-9692-9. Epub 2011 Dec 27.

PMID:
22200783
41.

Development of a solid phase extraction protocol coupled with liquid chromatography mass spectrometry to analyze central carbon metabolites in lake sediment microcosms.

Yang S, Synovec RE, Kalyuzhnaya MG, Lidstrom ME.

J Sep Sci. 2011 Dec;34(24):3597-605. doi: 10.1002/jssc.201100533. Epub 2011 Nov 21.

PMID:
22102321
42.

An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis.

Beck DA, Hendrickson EL, Vorobev A, Wang T, Lim S, Kalyuzhnaya MG, Lidstrom ME, Hackett M, Chistoserdova L.

J Bacteriol. 2011 Sep;193(18):4758-65. doi: 10.1128/JB.05375-11. Epub 2011 Jul 15.

43.

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.

Svenning MM, Hestnes AG, Wartiainen I, Stein LY, Klotz MG, Kalyuzhnaya MG, Spang A, Bringel F, Vuilleumier S, Lajus A, Médigue C, Bruce DC, Cheng JF, Goodwin L, Ivanova N, Han J, Han CS, Hauser L, Held B, Land ML, Lapidus A, Lucas S, Nolan M, Pitluck S, Woyke T.

J Bacteriol. 2011 Nov;193(22):6418-9. doi: 10.1128/JB.05380-11. Epub 2011 Jul 1.

44.

Genome sequence of Methyloversatilis universalis FAM5T, a methylotrophic representative of the order Rhodocyclales.

Kittichotirat W, Good NM, Hall R, Bringel F, Lajus A, Médigue C, Smalley NE, Beck D, Bumgarner R, Vuilleumier S, Kalyuzhnaya MG.

J Bacteriol. 2011 Sep;193(17):4541-2. doi: 10.1128/JB.05331-11. Epub 2011 Jul 1.

45.

Direct measurement of oxygen consumption rates from attached and unattached cells in a reversibly sealed, diffusionally isolated sample chamber.

Strovas TJ, McQuaide SC, Anderson JB, Nandakumar V, Kalyuzhnaya MG, Burgess LW, Holl MR, Meldrum DR, Lidstrom ME.

Adv Biosci Biotechnol. 2010 Dec 1;5(5):398-408.

46.

Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).

Stein LY, Bringel F, DiSpirito AA, Han S, Jetten MS, Kalyuzhnaya MG, Kits KD, Klotz MG, Op den Camp HJ, Semrau JD, Vuilleumier S, Bruce DC, Cheng JF, Davenport KW, Goodwin L, Han S, Hauser L, Lajus A, Land ML, Lapidus A, Lucas S, Médigue C, Pitluck S, Woyke T.

J Bacteriol. 2011 May;193(10):2668-9. doi: 10.1128/JB.00278-11. Epub 2011 Mar 25.

47.

Single cell methods for methane oxidation analysis.

Konopka MC, McQuaide S, Ojala DS, Kalyuzhnaya MG, Lidstrom ME.

Methods Enzymol. 2011;495:149-66. doi: 10.1016/B978-0-12-386905-0.00010-3.

PMID:
21419920
48.

Genetic systems for moderately halo(alkali)philic bacteria of the genus Methylomicrobium.

Ojala DS, Beck DA, Kalyuzhnaya MG.

Methods Enzymol. 2011;495:99-118. doi: 10.1016/B978-0-12-386905-0.00007-3.

PMID:
21419917
49.

Functional metagenomics of methylotrophs.

Kalyuzhnaya MG, Beck DA, Chistoserdova L.

Methods Enzymol. 2011;495:81-98. doi: 10.1016/B978-0-12-386905-0.00006-1.

PMID:
21419916
50.

Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera.

Kalyuzhnaya MG, Beck DA, Vorobev A, Smalley N, Kunkel DD, Lidstrom ME, Chistoserdova L.

Int J Syst Evol Microbiol. 2012 Jan;62(Pt 1):106-11. doi: 10.1099/ijs.0.029165-0. Epub 2011 Feb 18.

PMID:
21335496

Supplemental Content

Loading ...
Support Center