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Items: 27

1.

Perspectives on the basic and applied aspects of crassulacean acid metabolism (CAM) research.

Liu D, Palla KJ, Hu R, Moseley RC, Mendoza C, Chen M, Abraham PE, Labbé JL, Kalluri UC, Tschaplinski TJ, Cushman JC, Borland AM, Tuskan GA, Yang X.

Plant Sci. 2018 Sep;274:394-401. doi: 10.1016/j.plantsci.2018.06.012. Epub 2018 Jun 19. Review.

PMID:
30080627
2.

A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus.

Xie M, Muchero W, Bryan AC, Yee K, Guo HB, Zhang J, Tschaplinski TJ, Singan VR, Lindquist E, Payyavula RS, Barros-Rios J, Dixon R, Engle N, Sykes RW, Davis M, Jawdy SS, Gunter LE, Thompson O, DiFazio SP, Evans LM, Winkeler K, Collins C, Schmutz J, Guo H, Kalluri U, Rodriguez M, Feng K, Chen JG, Tuskan GA.

Plant Cell. 2018 Jul;30(7):1645-1660. doi: 10.1105/tpc.18.00168. Epub 2018 Jun 11.

3.

Tension wood structure and morphology conducive for better enzymatic digestion.

Sawada D, Kalluri UC, O'Neill H, Urban V, Langan P, Davison B, Pingali SV.

Biotechnol Biofuels. 2018 Feb 16;11:44. doi: 10.1186/s13068-018-1043-x. eCollection 2018.

4.

Agronomic performance of Populus deltoides trees engineered for biofuel production.

Macaya-Sanz D, Chen JG, Kalluri UC, Muchero W, Tschaplinski TJ, Gunter LE, Simon SJ, Biswal AK, Bryan AC, Payyavula R, Xie M, Yang Y, Zhang J, Mohnen D, Tuskan GA, DiFazio SP.

Biotechnol Biofuels. 2017 Nov 30;10:253. doi: 10.1186/s13068-017-0934-6. eCollection 2017.

5.

Down-Regulation of KORRIGAN-Like Endo-β-1,4-Glucanase Genes Impacts Carbon Partitioning, Mycorrhizal Colonization and Biomass Production in Populus.

Kalluri UC, Payyavula RS, Labbé JL, Engle N, Bali G, Jawdy SS, Sykes RW, Davis M, Ragauskas A, Tuskan GA, Tschaplinski TJ.

Front Plant Sci. 2016 Oct 4;7:1455. eCollection 2016.

6.

Carbon Nanofiber Arrays: A Novel Tool for Microdelivery of Biomolecules to Plants.

Davern SM, McKnight TE, Standaert RF, Morrell-Falvey JL, Shpak ED, Kalluri UC, Jelenska J, Greenberg JT, Mirzadeh S.

PLoS One. 2016 Apr 27;11(4):e0153621. doi: 10.1371/journal.pone.0153621. eCollection 2016.

7.

A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers.

Vandavasi VG, Putnam DK, Zhang Q, Petridis L, Heller WT, Nixon BT, Haigler CH, Kalluri U, Coates L, Langan P, Smith JC, Meiler J, O'Neill H.

Plant Physiol. 2016 Jan;170(1):123-35. doi: 10.1104/pp.15.01356. Epub 2015 Nov 10.

8.

Systems and synthetic biology approaches to alter plant cell walls and reduce biomass recalcitrance.

Kalluri UC, Yin H, Yang X, Davison BH.

Plant Biotechnol J. 2014 Dec;12(9):1207-16. doi: 10.1111/pbi.12283. Epub 2014 Nov 3. Review.

9.

Metabolic profiling reveals altered sugar and secondary metabolism in response to UGPase overexpression in Populus.

Payyavula RS, Tschaplinski TJ, Jawdy SS, Sykes RW, Tuskan GA, Kalluri UC.

BMC Plant Biol. 2014 Oct 7;14:265. doi: 10.1186/s12870-014-0265-8.

10.

Cell culture metabolomics in the diagnosis of lung cancer-the influence of cell culture conditions.

Kalluri U, Naiker M, Myers MA.

J Breath Res. 2014 Jun;8(2):027109. doi: 10.1088/1752-7155/8/2/027109. Epub 2014 May 27. Review.

PMID:
24861817
11.

Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions.

Sukumar P, Legué V, Vayssières A, Martin F, Tuskan GA, Kalluri UC.

Plant Cell Environ. 2013 May;36(5):909-19. doi: 10.1111/pce.12036. Epub 2012 Dec 11. Review.

12.

3D chemical image using TOF-SIMS revealing the biopolymer component spatial and lateral distributions in biomass.

Jung S, Foston M, Kalluri UC, Tuskan GA, Ragauskas AJ.

Angew Chem Int Ed Engl. 2012 Nov 26;51(48):12005-8. doi: 10.1002/anie.201205243. Epub 2012 Oct 25. No abstract available.

PMID:
23109300
13.

Putting the pieces together: high-performance LC-MS/MS provides network-, pathway-, and protein-level perspectives in Populus.

Abraham P, Giannone RJ, Adams RM, Kalluri U, Tuskan GA, Hettich RL.

Mol Cell Proteomics. 2013 Jan;12(1):106-19. doi: 10.1074/mcp.M112.022996. Epub 2012 Oct 16.

14.

Highly efficient isolation of Populus mesophyll protoplasts and its application in transient expression assays.

Guo J, Morrell-Falvey JL, Labbé JL, Muchero W, Kalluri UC, Tuskan GA, Chen JG.

PLoS One. 2012;7(9):e44908. doi: 10.1371/journal.pone.0044908. Epub 2012 Sep 13.

15.

Defining the boundaries and characterizing the landscape of functional genome expression in vascular tissues of Populus using shotgun proteomics.

Abraham P, Adams R, Giannone RJ, Kalluri U, Ranjan P, Erickson B, Shah M, Tuskan GA, Hettich RL.

J Proteome Res. 2012 Jan 1;11(1):449-60. doi: 10.1021/pr200851y. Epub 2011 Nov 9.

PMID:
22003893
16.

Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics.

Yang X, Ye CY, Bisaria A, Tuskan GA, Kalluri UC.

Plant Sci. 2011 Dec;181(6):675-87. doi: 10.1016/j.plantsci.2011.01.020. Epub 2011 Feb 17.

PMID:
21958710
17.

Challenges of the utilization of wood polymers: how can they be overcome?

Pu Y, Kosa M, Kalluri UC, Tuskan GA, Ragauskas AJ.

Appl Microbiol Biotechnol. 2011 Sep;91(6):1525-36. doi: 10.1007/s00253-011-3350-z. Epub 2011 Jul 28. Review.

PMID:
21796383
18.

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA.

Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2.

19.

Bioenergy research: a new paradigm in multidisciplinary research.

Kalluri UC, Keller M.

J R Soc Interface. 2010 Oct 6;7(51):1391-401. doi: 10.1098/rsif.2009.0564. Epub 2010 Jun 11. Review.

20.

Spectroscopy and atomic force microscopy of biomass.

Tetard L, Passian A, Farahi RH, Kalluri UC, Davison BH, Thundat T.

Ultramicroscopy. 2010 May;110(6):701-7. doi: 10.1016/j.ultramic.2010.02.035. Epub 2010 Feb 25.

PMID:
20236767
21.

Shotgun proteome profile of Populus developing xylem.

Kalluri UC, Hurst GB, Lankford PK, Ranjan P, Pelletier DA.

Proteomics. 2009 Nov;9(21):4871-80. doi: 10.1002/pmic.200800854.

PMID:
19743414
22.

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

Yang X, Kalluri UC, Jawdy S, Gunter LE, Yin T, Tschaplinski TJ, Weston DJ, Ranjan P, Tuskan GA.

Plant Physiol. 2008 Nov;148(3):1189-200. doi: 10.1104/pp.108.121921. Epub 2008 Sep 5.

23.

Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.

Kalluri UC, Difazio SP, Brunner AM, Tuskan GA.

BMC Plant Biol. 2007 Nov 6;7:59.

24.

Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors.

Filichkin SA, DiFazio SP, Brunner AM, Davis JM, Yang ZK, Kalluri UC, Arias RS, Etherington E, Tuskan GA, Strauss SH.

Plant Biotechnol J. 2007 Sep;5(5):615-26. Epub 2007 Jun 15.

25.

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D.

Science. 2006 Sep 15;313(5793):1596-604.

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