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Items: 17

1.

Automatic Inference of Sequence from Low-Resolution Crystallographic Data.

Ben-Aharon Z, Levitt M, Kalisman N.

Structure. 2018 Nov 6;26(11):1546-1554.e2. doi: 10.1016/j.str.2018.08.011. Epub 2018 Oct 4.

PMID:
30293812
2.

Structural Analysis of Protein Complexes by Cross-Linking and Mass Spectrometry.

Slavin M, Kalisman N.

Methods Mol Biol. 2018;1764:173-183. doi: 10.1007/978-1-4939-7759-8_11.

PMID:
29605915
3.

Def1 interacts with TFIIH and modulates RNA polymerase II transcription.

Damodaren N, Van Eeuwen T, Zamel J, Lin-Shiao E, Kalisman N, Murakami K.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):13230-13235. doi: 10.1073/pnas.1707955114. Epub 2017 Nov 27.

4.

Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.

Braun T, Vos MR, Kalisman N, Sherman NE, Rachel R, Wirth R, Schröder GF, Egelman EH.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10352-7. doi: 10.1073/pnas.1607756113. Epub 2016 Aug 30.

5.

Structure of an RNA polymerase II preinitiation complex.

Murakami K, Tsai KL, Kalisman N, Bushnell DA, Asturias FJ, Kornberg RD.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13543-8. doi: 10.1073/pnas.1518255112. Epub 2015 Oct 19.

6.

Architecture of an RNA polymerase II transcription pre-initiation complex.

Murakami K, Elmlund H, Kalisman N, Bushnell DA, Adams CM, Azubel M, Elmlund D, Levi-Kalisman Y, Liu X, Gibbons BJ, Levitt M, Kornberg RD.

Science. 2013 Nov 8;342(6159):1238724. doi: 10.1126/science.1238724. Epub 2013 Sep 26.

7.

The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning.

Kalisman N, Schröder GF, Levitt M.

Structure. 2013 Apr 2;21(4):540-9. doi: 10.1016/j.str.2013.01.017. Epub 2013 Mar 7.

8.

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling.

Kalisman N, Adams CM, Levitt M.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2884-9. doi: 10.1073/pnas.1119472109. Epub 2012 Feb 1.

9.

Structure-based identification of catalytic residues.

Yahalom R, Reshef D, Wiener A, Frankel S, Kalisman N, Lerner B, Keasar C.

Proteins. 2011 Jun;79(6):1952-63. doi: 10.1002/prot.23020. Epub 2011 Apr 12.

10.

Synthesis and characterization of Au102(p-MBA)44 nanoparticles.

Levi-Kalisman Y, Jadzinsky PD, Kalisman N, Tsunoyama H, Tsukuda T, Bushnell DA, Kornberg RD.

J Am Chem Soc. 2011 Mar 9;133(9):2976-82. doi: 10.1021/ja109131w. Epub 2011 Feb 14.

PMID:
21319754
11.

Consistent refinement of submitted models at CASP using a knowledge-based potential.

Chopra G, Kalisman N, Levitt M.

Proteins. 2010 Sep;78(12):2668-78. doi: 10.1002/prot.22781.

12.
13.

Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials.

Noy K, Kalisman N, Keasar C.

BMC Struct Biol. 2008 May 29;8:27. doi: 10.1186/1472-6807-8-27.

14.

Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities.

Amir ED, Kalisman N, Keasar C.

Proteins. 2008 Jul;72(1):62-73. doi: 10.1002/prot.21896.

PMID:
18186478
15.

MESHI: a new library of Java classes for molecular modeling.

Kalisman N, Levi A, Maximova T, Reshef D, Zafriri-Lynn S, Gleyzer Y, Keasar C.

Bioinformatics. 2005 Oct 15;21(20):3931-2. Epub 2005 Aug 16.

PMID:
16105898
16.

The neocortical microcircuit as a tabula rasa.

Kalisman N, Silberberg G, Markram H.

Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):880-5. Epub 2005 Jan 3.

17.

Deriving physical connectivity from neuronal morphology.

Kalisman N, Silberberg G, Markram H.

Biol Cybern. 2003 Mar;88(3):210-8.

PMID:
12647228

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