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Items: 1 to 50 of 464

1.

Pseudomonas bubulae sp. nov., isolated from beef.

Lick S, Kröckel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J.

Int J Syst Evol Microbiol. 2019 Oct 17. doi: 10.1099/ijsem.0.003751. [Epub ahead of print]

PMID:
31622235
2.

Association Between High Perceived Stress Over Time and Incident Hypertension in Black Adults: Findings From the Jackson Heart Study.

Spruill TM, Butler MJ, Thomas SJ, Tajeu GS, Kalinowski J, Castañeda SF, Langford AT, Abdalla M, Blackshear C, Allison M, Ogedegbe G, Sims M, Shimbo D.

J Am Heart Assoc. 2019 Nov 5;8(21):e012139. doi: 10.1161/JAHA.119.012139. Epub 2019 Oct 16.

3.

Prediabetes and Risk for Cardiovascular Disease by Hypertension Status in Black Adults: The Jackson Heart Study.

Hubbard D, Colantonio LD, Tanner RM, Carson AP, Sakhuja S, Jaeger BC, Carey RM, Cohen LP, Shimbo D, Butler M, Bertoni AG, Langford AT, Booth JN 3rd, Kalinowski J, Muntner P.

Diabetes Care. 2019 Oct 7. pii: dc191074. doi: 10.2337/dc19-1074. [Epub ahead of print]

PMID:
31591089
4.

Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.

Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B.

Genes (Basel). 2019 Sep 2;10(9). pii: E671. doi: 10.3390/genes10090671.

5.

Continuous Adaptive Evolution of a Fast-Growing Corynebacterium glutamicum Strain Independent of Protocatechuate.

Graf M, Haas T, Müller F, Buchmann A, Harm-Bekbenbetova J, Freund A, Nieß A, Persicke M, Kalinowski J, Blombach B, Takors R.

Front Microbiol. 2019 Aug 6;10:1648. doi: 10.3389/fmicb.2019.01648. eCollection 2019.

6.

Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia.

Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V.

Microbiol Resour Announc. 2019 Aug 22;8(34). pii: e00477-19. doi: 10.1128/MRA.00477-19.

7.

The International Impact of the Active Healthy Kids Global Alliance Physical Activity Report Cards for Children and Youth.

Aubert S, Barnes JD, Forse ML, Turner E, González SA, Kalinowski J, Katzmarzyk PT, Lee EY, Ocansey R, Reilly JJ, Schranz N, Vanderloo LM, Tremblay MS.

J Phys Act Health. 2019 Aug 13:1-19. doi: 10.1123/jpah.2019-0244. [Epub ahead of print]

PMID:
31412317
8.

Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.

Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Müller B, Makarewicz O.

Sci Rep. 2019 Aug 2;9(1):11223. doi: 10.1038/s41598-019-47758-5.

9.

Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams.

Nguyen TV, Wibberg D, Vigil-Stenman T, Berckx F, Battenberg K, Demchenko KN, Blom J, Fernandez MP, Yamanaka T, Berry AM, Kalinowski J, Brachmann A, Pawlowski K.

Genome Biol Evol. 2019 Aug 1;11(8):2273-2291. doi: 10.1093/gbe/evz153.

10.

Effect of "ribosome engineering" on the transcription level and production of S. albus indigenous secondary metabolites.

Lopatniuk M, Myronovskyi M, Nottebrock A, Busche T, Kalinowski J, Ostash B, Fedorenko V, Luzhetskyy A.

Appl Microbiol Biotechnol. 2019 Sep;103(17):7097-7110. doi: 10.1007/s00253-019-10005-y. Epub 2019 Jul 19.

PMID:
31324940
11.

Exploiting Hydrogenophaga pseudoflava for aerobic syngas-based production of chemicals.

Grenz S, Baumann PT, Rückert C, Nebel BA, Siebert D, Schwentner A, Eikmanns BJ, Hauer B, Kalinowski J, Takors R, Blombach B.

Metab Eng. 2019 Sep;55:220-230. doi: 10.1016/j.ymben.2019.07.006. Epub 2019 Jul 15.

PMID:
31319152
12.

The MarR-Type Repressor MhqR Confers Quinone and Antimicrobial Resistance in Staphylococcus aureus.

Fritsch VN, Loi VV, Busche T, Sommer A, Tedin K, Nürnberg DJ, Kalinowski J, Bernhardt J, Fulde M, Antelmann H.

Antioxid Redox Signal. 2019 Aug 9. doi: 10.1089/ars.2019.7750. [Epub ahead of print]

PMID:
31310152
13.

Perquinolines A-C: Unprecedented Bacterial Tetrahydroisoquinolines Involving an Intriguing Biosynthesis.

Rebets Y, Nadmid S, Paulus C, Dahlem C, Herrmann J, Hübner H, Rückert C, Kiemer AK, Gmeiner P, Kalinowski J, Müller R, Luzhetskyy A.

Angew Chem Int Ed Engl. 2019 Sep 9;58(37):12930-12934. doi: 10.1002/anie.201905538. Epub 2019 Aug 21.

PMID:
31310031
14.

Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies.

Seeger B, Mentz A, Knebel C, Schmidt F, Bednarz H, Niehaus K, Albaum S, Kalinowski J, Noll T, Steinberg P, Marx-Stoelting P, Heise T.

Arch Toxicol. 2019 Aug;93(8):2321-2333. doi: 10.1007/s00204-019-02502-w. Epub 2019 Jun 28.

PMID:
31254001
15.

Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110.

Schaffert L, März C, Burkhardt L, Droste J, Brandt D, Busche T, Rosen W, Schneiker-Bekel S, Persicke M, Pühler A, Kalinowski J.

Microb Cell Fact. 2019 Jun 28;18(1):114. doi: 10.1186/s12934-019-1162-5.

16.

The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16.

Arenas-López C, Locker J, Orol D, Walter F, Busche T, Kalinowski J, Minton NP, Kovács K, Winzer K.

Biotechnol Biofuels. 2019 Jun 17;12:150. doi: 10.1186/s13068-019-1489-5. eCollection 2019.

17.

The MarR-Type Regulator MalR Is Involved in Stress-Responsive Cell Envelope Remodeling in Corynebacterium glutamicum.

Hünnefeld M, Persicke M, Kalinowski J, Frunzke J.

Front Microbiol. 2019 May 21;10:1039. doi: 10.3389/fmicb.2019.01039. eCollection 2019.

18.

A defined cultivation medium for Sulfolobus acidocaldarius.

Quehenberger J, Albersmeier A, Glatzel H, Hackl M, Kalinowski J, Spadiut O.

J Biotechnol. 2019 Aug 10;301:56-67. doi: 10.1016/j.jbiotec.2019.04.028. Epub 2019 May 31.

PMID:
31153897
19.

Identifying the Growth Modulon of Corynebacterium glutamicum.

Haas T, Graf M, Nieß A, Busche T, Kalinowski J, Blombach B, Takors R.

Front Microbiol. 2019 May 8;10:974. doi: 10.3389/fmicb.2019.00974. eCollection 2019.

20.

Staphylococcus aureus responds to allicin by global S-thioallylation - Role of the Brx/BSH/YpdA pathway and the disulfide reductase MerA to overcome allicin stress.

Loi VV, Huyen NTT, Busche T, Tung QN, Gruhlke MCH, Kalinowski J, Bernhardt J, Slusarenko AJ, Antelmann H.

Free Radic Biol Med. 2019 Aug 1;139:55-69. doi: 10.1016/j.freeradbiomed.2019.05.018. Epub 2019 May 20.

21.

Protease-Activated Receptor 1 Deletion Causes Enhanced Osteoclastogenesis in Response to Inflammatory Signals through a Notch2-Dependent Mechanism.

Jastrzebski S, Kalinowski J, Mun S, Shin B, Adapala NS, Jacome-Galarza CE, Mirza F, Aguila HL, Drissi H, Sanjay A, Canalis E, Lee SK, Lorenzo JA.

J Immunol. 2019 Jul 1;203(1):105-116. doi: 10.4049/jimmunol.1801032. Epub 2019 May 20.

PMID:
31109956
22.

Biosynthetic reconstitution of deoxysugar phosphoramidate metalloprotease inhibitors using an N-P-bond-forming kinase.

Baulig A, Helmle I, Bader M, Wolf F, Kulik A, Al-Dilaimi A, Wibberg D, Kalinowski J, Gross H, Kaysser L.

Chem Sci. 2019 Mar 21;10(16):4486-4490. doi: 10.1039/c9sc00641a. eCollection 2019 Apr 28.

23.

Fabry disease: Detection of Alu-mediated exon duplication by NGS.

Farr M, Ferreira S, Al-Dilaimi A, Bögeholz S, Goesmann A, Kalinowski J, Knabbe C, Faber L, Oliveira JP, Rudolph V.

Mol Cell Probes. 2019 Jun;45:79-83. doi: 10.1016/j.mcp.2019.03.008. Epub 2019 Mar 29.

PMID:
30936019
24.

A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs.

Gräwe A, Dreyer A, Vornholt T, Barteczko U, Buchholz L, Drews G, Ho UL, Jackowski ME, Kracht M, Lüders J, Bleckwehl T, Rositzka L, Ruwe M, Wittchen M, Lutter P, Müller K, Kalinowski J.

PLoS One. 2019 Mar 6;14(3):e0210940. doi: 10.1371/journal.pone.0210940. eCollection 2019.

25.

Why Are Young Black Women at High Risk for Cardiovascular Disease?

Kalinowski J, Taylor JY, Spruill TM.

Circulation. 2019 Feb 19;139(8):1003-1004. doi: 10.1161/CIRCULATIONAHA.118.037689. No abstract available.

PMID:
30779648
26.

Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032.

Dostálová H, Busche T, Holátko J, Rucká L, Štěpánek V, Barvík I, Nešvera J, Kalinowski J, Pátek M.

Front Microbiol. 2019 Jan 9;9:3287. doi: 10.3389/fmicb.2018.03287. eCollection 2018.

27.

Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.

Bischof LF, Haurat MF, Hoffmann L, Albersmeier A, Wolf J, Neu A, Pham TK, Albaum SP, Jakobi T, Schouten S, Neumann-Schaal M, Wright PC, Kalinowski J, Siebers B, Albers SV.

Front Microbiol. 2019 Jan 10;9:3201. doi: 10.3389/fmicb.2018.03201. eCollection 2018.

28.

Draft Genome Sequence of Micromonospora sp. Strain MW-13, a Bacterial Strain with Antibacterial Properties and Plant Growth Promotion Potential Isolated from the Rhizosphere of Wheat in Iran.

Jahanshah G, Miess H, Busche T, Rückert C, Kalinowski J, Rokni-Zadeh H, Gross H.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01375-18. doi: 10.1128/MRA.01375-18. eCollection 2019 Jan.

29.

Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources.

Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brück TB.

Front Bioeng Biotechnol. 2018 Dec 18;6:200. doi: 10.3389/fbioe.2018.00200. eCollection 2018.

30.

Genome Mining of Streptomyces sp. YIM 130001 Isolated From Lichen Affords New Thiopeptide Antibiotic.

Schneider O, Simic N, Aachmann FL, Rückert C, Kristiansen KA, Kalinowski J, Jiang Y, Wang L, Jiang CL, Lale R, Zotchev SB.

Front Microbiol. 2018 Dec 19;9:3139. doi: 10.3389/fmicb.2018.03139. eCollection 2018.

31.

The AGXX® Antimicrobial Coating Causes a Thiol-Specific Oxidative Stress Response and Protein S-bacillithiolation in Staphylococcus aureus.

Loi VV, Busche T, Preuß T, Kalinowski J, Bernhardt J, Antelmann H.

Front Microbiol. 2018 Dec 11;9:3037. doi: 10.3389/fmicb.2018.03037. eCollection 2018.

32.

Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene Deletions.

Rebets Y, Tsolis KC, Guðmundsdóttir EE, Koepff J, Wawiernia B, Busche T, Bleidt A, Horbal L, Myronovskyi M, Ahmed Y, Wiechert W, Rückert C, Hamed MB, Bilyk B, Anné J, Friðjónsson Ó, Kalinowski J, Oldiges M, Economou A, Luzhetskyy A.

Front Microbiol. 2018 Dec 10;9:3033. doi: 10.3389/fmicb.2018.03033. eCollection 2018.

33.

Cardiovascular Disease and Mortality in Adults Aged ≥60 Years According to Recommendations by the American College of Cardiology/American Heart Association and American College of Physicians/American Academy of Family Physicians.

Jaeger BC, Anstey DE, Bress AP, Booth JN 3rd, Butler M, Clark D 3rd, Howard G, Kalinowski J, Long DL, Ogedegbe G, Plante TB, Shimbo D, Sims M, Supiano MA, Whelton PK, Muntner P.

Hypertension. 2019 Feb;73(2):327-334. doi: 10.1161/HYPERTENSIONAHA.118.12291.

PMID:
30595115
34.

Transcriptomic and fluxomic changes in Streptomyces lividans producing heterologous protein.

Daniels W, Bouvin J, Busche T, Rückert C, Simoens K, Karamanou S, Van Mellaert L, Friðjónsson ÓH, Nicolai B, Economou A, Kalinowski J, Anné J, Bernaerts K.

Microb Cell Fact. 2018 Dec 21;17(1):198. doi: 10.1186/s12934-018-1040-6.

35.

Secretome Dynamics in a Gram-Positive Bacterial Model.

Tsolis KC, Hamed MB, Simoens K, Koepff J, Busche T, Rückert C, Oldiges M, Kalinowski J, Anné J, Kormanec J, Bernaerts K, Karamanou S, Economou A.

Mol Cell Proteomics. 2019 Mar;18(3):423-436. doi: 10.1074/mcp.RA118.000899. Epub 2018 Nov 29.

PMID:
30498012
36.

Stable integration of the Mrx1-roGFP2 biosensor to monitor dynamic changes of the mycothiol redox potential in Corynebacterium glutamicum.

Tung QN, Loi VV, Busche T, Nerlich A, Mieth M, Milse J, Kalinowski J, Hocke AC, Antelmann H.

Redox Biol. 2019 Jan;20:514-525. doi: 10.1016/j.redox.2018.11.012. Epub 2018 Nov 17.

37.

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.

Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M, Prangishvili D.

Environ Microbiol. 2019 Jun;21(6):2002-2014. doi: 10.1111/1462-2920.14479. Epub 2019 Jan 8.

PMID:
30451355
38.

Blackcurrant Supplementation Improves Trabecular Bone Mass in Young but Not Aged Mice.

Sakaki J, Melough M, Lee SG, Kalinowski J, Koo SI, Lee SK, Chun OK.

Nutrients. 2018 Nov 5;10(11). pii: E1671. doi: 10.3390/nu10111671.

39.

Comparative Secretome Analyses of Human and Zoonotic Staphylococcus aureus Isolates CC8, CC22, and CC398.

Busche T, Hillion M, Van Loi V, Berg D, Walther B, Semmler T, Strommenger B, Witte W, Cuny C, Mellmann A, Holmes MA, Kalinowski J, Adrian L, Bernhardt J, Antelmann H.

Mol Cell Proteomics. 2018 Dec;17(12):2412-2433. doi: 10.1074/mcp.RA118.001036. Epub 2018 Sep 10.

40.

New Alpiniamides From Streptomyces sp. IB2014/011-12 Assembled by an Unusual Hybrid Non-ribosomal Peptide Synthetase Trans-AT Polyketide Synthase Enzyme.

Paulus C, Rebets Y, Zapp J, Rückert C, Kalinowski J, Luzhetskyy A.

Front Microbiol. 2018 Aug 22;9:1959. doi: 10.3389/fmicb.2018.01959. eCollection 2018.

41.

Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.

Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J.

J Biol Eng. 2018 Aug 14;12:13. doi: 10.1186/s13036-018-0105-8. eCollection 2018. Review.

42.

toaSTR: A web application for forensic STR genotyping by massively parallel sequencing.

Ganschow S, Silvery J, Kalinowski J, Tiemann C.

Forensic Sci Int Genet. 2018 Nov;37:21-28. doi: 10.1016/j.fsigen.2018.07.006. Epub 2018 Jul 6.

PMID:
30071493
43.

Heterologous AdpA transcription factors enhance landomycin production in Streptomyces cyanogenus S136 under a broad range of growth conditions.

Yushchuk O, Ostash I, Vlasiuk I, Gren T, Luzhetskyy A, Kalinowski J, Fedorenko V, Ostash B.

Appl Microbiol Biotechnol. 2018 Oct;102(19):8419-8428. doi: 10.1007/s00253-018-9249-1. Epub 2018 Jul 28.

PMID:
30056513
44.

High Quality de Novo Transcriptome Assembly of Croton tiglium.

Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B.

Front Mol Biosci. 2018 Jul 5;5:62. doi: 10.3389/fmolb.2018.00062. eCollection 2018. No abstract available.

45.

Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Schult F, Le TN, Albersmeier A, Rauch B, Blumenkamp P, van der Does C, Goesmann A, Kalinowski J, Albers SV, Siebers B.

Nucleic Acids Res. 2018 Aug 21;46(14):7179-7192. doi: 10.1093/nar/gky527.

46.

Genomics-Based Insights Into the Biosynthesis and Unusually High Accumulation of Free Fatty Acids by Streptomyces sp. NP10.

Schneider O, Ilic-Tomic T, Rückert C, Kalinowski J, Genčić MS, Živković MZ, Stankovic N, Radulović NS, Vasiljevic B, Nikodinovic-Runic J, Zotchev SB.

Front Microbiol. 2018 Jun 19;9:1302. doi: 10.3389/fmicb.2018.01302. eCollection 2018.

47.

RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.

Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit AC, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman JI.

G3 (Bethesda). 2018 Jul 31;8(8):2709-2722. doi: 10.1534/g3.118.200171.

48.

Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry.

Kibret M, Guerrero-Garzón JF, Urban E, Zehl M, Wronski VK, Rückert C, Busche T, Kalinowski J, Rollinger JM, Abate D, Zotchev SB.

Front Microbiol. 2018 Jun 12;9:1270. doi: 10.3389/fmicb.2018.01270. eCollection 2018.

49.

Binning enables efficient host genome reconstruction in cnidarian holobionts.

Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy075.

50.

Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion.

Busche T, Tsolis KC, Koepff J, Rebets Y, Rückert C, Hamed MB, Bleidt A, Wiechert W, Lopatniuk M, Yousra A, Anné J, Karamanou S, Oldiges M, Kalinowski J, Luzhetskyy A, Economou A.

Front Microbiol. 2018 Jun 4;9:1174. doi: 10.3389/fmicb.2018.01174. eCollection 2018.

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