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Items: 8

1.

Mapping gene regulatory networks from single-cell omics data.

Fiers MWEJ, Minnoye L, Aibar S, Bravo Gonz√°lez-Blas C, Kalender Atak Z, Aerts S.

Brief Funct Genomics. 2018 Jul 1;17(4):246-254. doi: 10.1093/bfgp/elx046. Review.

2.

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks.

Kalender Atak Z, Imrichova H, Svetlichnyy D, Hulselmans G, Christiaens V, Reumers J, Ceulemans H, Aerts S.

Genome Med. 2017 Aug 30;9(1):80. doi: 10.1186/s13073-017-0464-7.

3.

Decoding transcriptional states in cancer.

Wouters J, Kalender Atak Z, Aerts S.

Curr Opin Genet Dev. 2017 Apr;43:82-92. doi: 10.1016/j.gde.2017.01.003. Epub 2017 Jan 24. Review.

PMID:
28129557
4.

Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic.

Verfaillie A, Svetlichnyy D, Imrichova H, Davie K, Fiers M, Kalender Atak Z, Hulselmans G, Christiaens V, Aerts S.

Genome Res. 2016 Jul;26(7):882-95. doi: 10.1101/gr.204149.116. Epub 2016 May 18.

5.

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models.

Svetlichnyy D, Imrichova H, Fiers M, Kalender Atak Z, Aerts S.

PLoS Comput Biol. 2015 Nov 12;11(11):e1004590. doi: 10.1371/journal.pcbi.1004590. eCollection 2015 Nov.

6.

iRegulon: from a gene list to a gene regulatory network using large motif and track collections.

Janky R, Verfaillie A, Imrichov√° H, Van de Sande B, Standaert L, Christiaens V, Hulselmans G, Herten K, Naval Sanchez M, Potier D, Svetlichnyy D, Kalender Atak Z, Fiers M, Marine JC, Aerts S.

PLoS Comput Biol. 2014 Jul 24;10(7):e1003731. doi: 10.1371/journal.pcbi.1003731. eCollection 2014 Jul.

7.

High accuracy mutation detection in leukemia on a selected panel of cancer genes.

Kalender Atak Z, De Keersmaecker K, Gianfelici V, Geerdens E, Vandepoel R, Pauwels D, Porcu M, Lahortiga I, Brys V, Dirks WG, Quentmeier H, Cloos J, Cuppens H, Uyttebroeck A, Vandenberghe P, Cools J, Aerts S.

PLoS One. 2012;7(6):e38463. doi: 10.1371/journal.pone.0038463. Epub 2012 Jun 4.

8.

Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin's lymphoma and T-cell non-Hodgkin's lymphoma.

Kleppe M, Tousseyn T, Geissinger E, Kalender Atak Z, Aerts S, Rosenwald A, Wlodarska I, Cools J.

Haematologica. 2011 Nov;96(11):1723-7. doi: 10.3324/haematol.2011.041921. Epub 2011 Jul 26.

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