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Items: 43

1.

Endocytic Markers Associated with the Internalization and Processing of Aspergillus fumigatus Conidia by BEAS-2B Cells.

Clark HR, Powell AB, Simmons KA, Ayubi T, Kale SD.

mSphere. 2019 Feb 6;4(1). pii: e00663-18. doi: 10.1128/mSphere.00663-18.

2.

PenSeq: coverage you can count on.

Kale SD.

New Phytol. 2019 Feb;221(3):1177-1179. doi: 10.1111/nph.15608. No abstract available.

PMID:
30644579
3.

Large-scale protein function prediction using heterogeneous ensembles.

Wang L, Law J, Kale SD, Murali TM, Pandey G.

F1000Res. 2018 Sep 28;7. pii: ISCB Comm J-1577. doi: 10.12688/f1000research.16415.1. eCollection 2018.

4.

Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew.

Wu Y, Ma X, Pan Z, Kale SD, Song Y, King H, Zhang Q, Presley C, Deng X, Wei CI, Xiao S.

BMC Genomics. 2018 Sep 25;19(1):705. doi: 10.1186/s12864-018-5069-z.

5.

Nod2 is required for the early innate immune clearance of Acinetobacter baumannii from the lungs.

Kale SD, Dikshit N, Kumar P, Balamuralidhar V, Khameneh HJ, Bin Abdul Malik N, Koh TH, Tan GGY, Tan TT, Mortellaro A, Sukumaran B.

Sci Rep. 2017 Dec 12;7(1):17429. doi: 10.1038/s41598-017-17653-y.

6.

Modulation of Immune Signaling and Metabolism Highlights Host and Fungal Transcriptional Responses in Mouse Models of Invasive Pulmonary Aspergillosis.

Kale SD, Ayubi T, Chung D, Tubau-Juni N, Leber A, Dang HX, Karyala S, Hontecillas R, Lawrence CB, Cramer RA, Bassaganya-Riera J.

Sci Rep. 2017 Dec 6;7(1):17096. doi: 10.1038/s41598-017-17000-1.

7.

GraphSpace: stimulating interdisciplinary collaborations in network biology.

Bharadwaj A, Singh DP, Ritz A, Tegge AN, Poirel CL, Kraikivski P, Adames N, Luther K, Kale SD, Peccoud J, Tyson JJ, Murali TM.

Bioinformatics. 2017 Oct 1;33(19):3134-3136. doi: 10.1093/bioinformatics/btx382.

8.

Corrigendum: Pathway on demand: automated reconstruction of human signaling networks.

Ritz A, Poirel CL, Tegge AN, Sharp N, Simmons K, Powell A, Kale SD, Murali TM.

NPJ Syst Biol Appl. 2016 Nov 17;2:16026. doi: 10.1038/npjsba.2016.26. eCollection 2016.

9.

NLRP3 inflammasome pathway has a critical role in the host immunity against clinically relevant Acinetobacter baumannii pulmonary infection.

Dikshit N, Kale SD, Khameneh HJ, Balamuralidhar V, Tang CY, Kumar P, Lim TP, Tan TT, Kwa AL, Mortellaro A, Sukumaran B.

Mucosal Immunol. 2018 Jan;11(1):257-272. doi: 10.1038/mi.2017.50. Epub 2017 Jun 14.

PMID:
28612844
10.

The masks of Avh238.

Kale SD.

New Phytol. 2017 Apr;214(1):8-10. doi: 10.1111/nph.14493. No abstract available.

11.

Nucleolar Dominance and Repression of 45S Ribosomal RNA Genes in Hybrids between Xenopus borealis and X. muelleri (2n = 36).

Maciak S, Michalak K, Kale SD, Michalak P.

Cytogenet Genome Res. 2016;149(4):290-296. Epub 2016 Oct 12.

PMID:
27728911
12.

Selective advantage of trisomic human cells cultured in non-standard conditions.

Rutledge SD, Douglas TA, Nicholson JM, Vila-Casadesús M, Kantzler CL, Wangsa D, Barroso-Vilares M, Kale SD, Logarinho E, Cimini D.

Sci Rep. 2016 Mar 9;6:22828. doi: 10.1038/srep22828.

13.

Pathways on demand: automated reconstruction of human signaling networks.

Ritz A, Poirel CL, Tegge AN, Sharp N, Simmons K, Powell A, Kale SD, Murali TM.

NPJ Syst Biol Appl. 2016 Mar 3;2:16002. doi: 10.1038/npjsba.2016.2. eCollection 2016. Erratum in: NPJ Syst Biol Appl. 2016 Nov 17;2:16026.

14.

Crystal structure of the effector AvrLm4-7 of Leptosphaeria maculans reveals insights into its translocation into plant cells and recognition by resistance proteins.

Blondeau K, Blaise F, Graille M, Kale SD, Linglin J, Ollivier B, Labarde A, Lazar N, Daverdin G, Balesdent MH, Choi DH, Tyler BM, Rouxel T, van Tilbeurgh H, Fudal I.

Plant J. 2015 Aug;83(4):610-24. doi: 10.1111/tpj.12913. Epub 2015 Jul 14.

15.

Evaluation of different inactivation methods for high and low pathogenic avian influenza viruses in egg-fluids for antigen preparation.

Pawar SD, Murtadak VB, Kale SD, Shinde PV, Parkhi SS.

J Virol Methods. 2015 Sep 15;222:28-33. doi: 10.1016/j.jviromet.2015.05.004. Epub 2015 May 18.

PMID:
25997377
16.

Microbe-Independent Entry of Oomycete RxLR Effectors and Fungal RxLR-Like Effectors Into Plant and Animal Cells Is Specific and Reproducible.

Tyler BM, Kale SD, Wang Q, Tao K, Clark HR, Drews K, Antignani V, Rumore A, Hayes T, Plett JM, Fudal I, Gu B, Chen Q, Affeldt KJ, Berthier E, Fischer GJ, Dou D, Shan W, Keller NP, Martin F, Rouxel T, Lawrence CB.

Mol Plant Microbe Interact. 2015 Jan;2015(1):51-56. No abstract available.

PMID:
27839069
17.

Pathogenicity of avian influenza H11N1 virus isolated from wild aquatic bird Eurasian Spoonbill (Platalea leucorodia).

Koratkar SS, Pawar SD, Shelke VN, Kale SD, Mishra AC.

Indian J Med Res. 2014 May;139(5):782-5. No abstract available.

18.

Suitability of specimen types for isolation of avian influenza viruses from poultry.

Kale SD, Mishra AC, Pawar SD.

Indian J Virol. 2013 Dec;24(3):391-3. doi: 10.1007/s13337-013-0146-z. Epub 2013 Aug 20.

19.

Characterizing and measuring endocytosis of lipid-binding effectors in mammalian cells.

Clark HR, Hayes TA, Kale SD.

Methods Enzymol. 2014;535:103-19. doi: 10.1016/B978-0-12-397925-4.00007-9.

PMID:
24377920
20.

Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-like effectors into plant and animal cells is specific and reproducible.

Tyler BM, Kale SD, Wang Q, Tao K, Clark HR, Drews K, Antignani V, Rumore A, Hayes T, Plett JM, Fudal I, Gu B, Chen Q, Affeldt KJ, Berthier E, Fischer GJ, Dou D, Shan W, Keller NP, Martin F, Rouxel T, Lawrence CB.

Mol Plant Microbe Interact. 2013 Jun;26(6):611-6. doi: 10.1094/MPMI-02-13-0051-IA.

21.

Two RxLR avirulence genes in Phytophthora sojae determine soybean Rps1k-mediated disease resistance.

Song T, Kale SD, Arredondo FD, Shen D, Su L, Liu L, Wu Y, Wang Y, Dou D, Tyler BM.

Mol Plant Microbe Interact. 2013 Jul;26(7):711-20. doi: 10.1094/MPMI-12-12-0289-R.

22.

Structural basis for interactions of the Phytophthora sojae RxLR effector Avh5 with phosphatidylinositol 3-phosphate and for host cell entry.

Sun F, Kale SD, Azurmendi HF, Li D, Tyler BM, Capelluto DG.

Mol Plant Microbe Interact. 2013 Mar;26(3):330-44. doi: 10.1094/MPMI-07-12-0184-R.

23.

Avian influenza surveillance reveals presence of low pathogenic avian influenza viruses in poultry during 2009-2011 in the West Bengal State, India.

Pawar SD, Kale SD, Rawankar AS, Koratkar SS, Raut CG, Pande SA, Mullick J, Mishra AC.

Virol J. 2012 Aug 7;9:151. doi: 10.1186/1743-422X-9-151.

24.

Serologic evidence of avian influenza H9N2 and paramyxovirus type 1 infection in emus (Dromaius novaehollandiae) in India.

Shinde PV, Koratkar SS, Pawar SD, Kale SD, Rawankar AS, Mishra AC.

Avian Dis. 2012 Mar;56(1):257-60.

PMID:
22545557
25.

Oomycete and fungal effector entry, a microbial Trojan horse.

Kale SD.

New Phytol. 2012 Mar;193(4):874-81. Review.

PMID:
22403824
26.

Identification of lipid-binding effectors.

Kale SD, Tyler BM.

Methods Mol Biol. 2012;835:393-414. doi: 10.1007/978-1-61779-501-5_24.

PMID:
22183667
27.

Phytophthora sojae avirulence effector Avr3b is a secreted NADH and ADP-ribose pyrophosphorylase that modulates plant immunity.

Dong S, Yin W, Kong G, Yang X, Qutob D, Chen Q, Kale SD, Sui Y, Zhang Z, Dou D, Zheng X, Gijzen M, Tyler BM, Wang Y.

PLoS Pathog. 2011 Nov;7(11):e1002353. doi: 10.1371/journal.ppat.1002353. Epub 2011 Nov 10.

28.

Rust secreted protein Ps87 is conserved in diverse fungal pathogens and contains a RXLR-like motif sufficient for translocation into plant cells.

Gu B, Kale SD, Wang Q, Wang D, Pan Q, Cao H, Meng Y, Kang Z, Tyler BM, Shan W.

PLoS One. 2011;6(11):e27217. doi: 10.1371/journal.pone.0027217. Epub 2011 Nov 4.

29.

Entry of oomycete and fungal effectors into plant and animal host cells.

Kale SD, Tyler BM.

Cell Microbiol. 2011 Dec;13(12):1839-48. doi: 10.1111/j.1462-5822.2011.01659.x. Epub 2011 Aug 25. Review.

PMID:
21819515
30.

Sequence variants of the Phytophthora sojae RXLR effector Avr3a/5 are differentially recognized by Rps3a and Rps5 in soybean.

Dong S, Yu D, Cui L, Qutob D, Tedman-Jones J, Kale SD, Tyler BM, Wang Y, Gijzen M.

PLoS One. 2011;6(7):e20172. doi: 10.1371/journal.pone.0020172. Epub 2011 Jul 14.

31.

A secreted effector protein of Laccaria bicolor is required for symbiosis development.

Plett JM, Kemppainen M, Kale SD, Kohler A, Legué V, Brun A, Tyler BM, Pardo AG, Martin F.

Curr Biol. 2011 Jul 26;21(14):1197-203. doi: 10.1016/j.cub.2011.05.033. Epub 2011 Jul 14.

32.

Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire.

Wang Q, Han C, Ferreira AO, Yu X, Ye W, Tripathy S, Kale SD, Gu B, Sheng Y, Sui Y, Wang X, Zhang Z, Cheng B, Dong S, Shan W, Zheng X, Dou D, Tyler BM, Wang Y.

Plant Cell. 2011 Jun;23(6):2064-86. doi: 10.1105/tpc.111.086082. Epub 2011 Jun 7.

33.

Assaying effector function in planta using double-barreled particle bombardment.

Kale SD, Tyler BM.

Methods Mol Biol. 2011;712:153-72. doi: 10.1007/978-1-61737-998-7_13.

PMID:
21359807
34.

External lipid PI3P mediates entry of eukaryotic pathogen effectors into plant and animal host cells.

Kale SD, Gu B, Capelluto DG, Dou D, Feldman E, Rumore A, Arredondo FD, Hanlon R, Fudal I, Rouxel T, Lawrence CB, Shan W, Tyler BM.

Cell. 2010 Jul 23;142(2):284-95. doi: 10.1016/j.cell.2010.06.008. Erratum in: Cell. 2010 Sep 17;142(6):981-3.

35.

Different domains of Phytophthora sojae effector Avr4/6 are recognized by soybean resistance genes Rps4 and Rps6.

Dou D, Kale SD, Liu T, Tang Q, Wang X, Arredondo FD, Basnayake S, Whisson S, Drenth A, Maclean D, Tyler BM.

Mol Plant Microbe Interact. 2010 Apr;23(4):425-35. doi: 10.1094/MPMI-23-4-0425.

36.

Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a.

Qutob D, Tedman-Jones J, Dong S, Kuflu K, Pham H, Wang Y, Dou D, Kale SD, Arredondo FD, Tyler BM, Gijzen M.

PLoS One. 2009;4(4):e5066. doi: 10.1371/journal.pone.0005066. Epub 2009 Apr 3. Erratum in: PLoS One. 2009;4(6). doi: 10.1371/annotation/2a2adcf8-afbc-4d46-92c6-d543d6b29182.

37.

FTO gene variants are strongly associated with type 2 diabetes in South Asian Indians.

Yajnik CS, Janipalli CS, Bhaskar S, Kulkarni SR, Freathy RM, Prakash S, Mani KR, Weedon MN, Kale SD, Deshpande J, Krishnaveni GV, Veena SR, Fall CH, McCarthy MI, Frayling TM, Hattersley AT, Chandak GR.

Diabetologia. 2009 Feb;52(2):247-52. doi: 10.1007/s00125-008-1186-6. Epub 2008 Nov 13.

38.

RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery.

Dou D, Kale SD, Wang X, Jiang RH, Bruce NA, Arredondo FD, Zhang X, Tyler BM.

Plant Cell. 2008 Jul;20(7):1930-47. doi: 10.1105/tpc.107.056093. Epub 2008 Jul 11.

39.

Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b.

Dou D, Kale SD, Wang X, Chen Y, Wang Q, Wang X, Jiang RH, Arredondo FD, Anderson RG, Thakur PB, McDowell JM, Wang Y, Tyler BM.

Plant Cell. 2008 Apr;20(4):1118-33. doi: 10.1105/tpc.107.057067. Epub 2008 Apr 4.

40.

Characteristics of gestational diabetic mothers and their babies in an Indian diabetes clinic.

Kale SD, Kulkarni SR, Lubree HG, Meenakumari K, Deshpande VU, Rege SS, Deshpande J, Coyaji KJ, Yajnik CS.

J Assoc Physicians India. 2005 Oct;53:857-63.

PMID:
16459528
41.

High risk of diabetes and metabolic syndrome in Indian women with gestational diabetes mellitus.

Kale SD, Yajnik CS, Kulkarni SR, Meenakumari K, Joglekar AA, Khorsand N, Ladkat RS, Ramdas LV, Lubree HG.

Diabet Med. 2004 Nov;21(11):1257-8. No abstract available.

PMID:
15498096
42.

Impairment of glucose tolerance over 10 years in middle-aged normal glucose tolerant Indians.

Yajnik CS, Shelgikar KM, Naik SS, Sayyad MG, Raut KN, Bhat DS, Deshpande JA, Kale SD, Hockaday D.

Diabetes Care. 2003 Jul;26(7):2212-3. No abstract available.

PMID:
12832342
43.

Women, the public sphere, and the persistence of salons.

Kale SD.

Fr Hist Stud. 2002;25(1):115-48. No abstract available.

PMID:
21038726

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