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Items: 26

1.

MC1R and KIT haplotypes associate with pigmentation phenotypes of North American yak (Bos grunniens).

Petersen JL, Kalbfleisch TS, Parris M, Tietze SM, Cruickshank J.

J Hered. 2019 Nov 12. pii: esz070. doi: 10.1093/jhered/esz070. [Epub ahead of print]

PMID:
31714577
2.

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O'Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN.

Commun Biol. 2019 Sep 11;2:342. doi: 10.1038/s42003-019-0591-3. eCollection 2019.

3.

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis.

Carossino M, Dini P, Kalbfleisch TS, Loynachan AT, Canisso IF, Cook RF, Timoney PJ, Balasuriya UBR.

PLoS Pathog. 2019 Jul 29;15(7):e1007950. doi: 10.1371/journal.ppat.1007950. eCollection 2019 Jul.

4.

A bovine CD18 signal peptide variant with increased binding activity to Mannheimia hemolytica leukotoxin.

Workman AM, Chitko-McKown CG, Smith TPL, Bennett GL, Kalbfleisch TS, Basnayake V, Heaton MP.

F1000Res. 2018 Dec 28;7:1985. doi: 10.12688/f1000research.17187.1. eCollection 2018.

5.

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN.

Commun Biol. 2018 Nov 16;1:197. doi: 10.1038/s42003-018-0199-z. eCollection 2018. Erratum in: Commun Biol. 2019 Sep 11;2:342.

6.

Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project.

Burns EN, Bordbari MH, Mienaltowski MJ, Affolter VK, Barro MV, Gianino F, Gianino G, Giulotto E, Kalbfleisch TS, Katzman SA, Lassaline M, Leeb T, Mack M, Müller EJ, MacLeod JN, Ming-Whitfield B, Alanis CR, Raudsepp T, Scott E, Vig S, Zhou H, Petersen JL, Bellone RR, Finno CJ.

Anim Genet. 2018 Dec;49(6):564-570. doi: 10.1111/age.12717. Epub 2018 Oct 11.

PMID:
30311254
7.

A SNP resource for studying North American moose.

Kalbfleisch TS, Murdoch BM, Smith TPL, Murdoch JD, Heaton MP, McKay SD.

F1000Res. 2018 Jan 10;7:40. doi: 10.12688/f1000research.13501.1. eCollection 2018.

8.

Downregulation of MicroRNA eca-mir-128 in Seminal Exosomes and Enhanced Expression of CXCL16 in the Stallion Reproductive Tract Are Associated with Long-Term Persistence of Equine Arteritis Virus.

Carossino M, Dini P, Kalbfleisch TS, Loynachan AT, Canisso IF, Shuck KM, Timoney PJ, Cook RF, Balasuriya UBR.

J Virol. 2018 Apr 13;92(9). pii: e00015-18. doi: 10.1128/JVI.00015-18. Print 2018 May 1.

9.

Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity.

Heaton MP, Smith TPL, Freking BA, Workman AM, Bennett GL, Carnahan JK, Kalbfleisch TS.

F1000Res. 2017 Aug 2;6:1303. doi: 10.12688/f1000research.12216.1. eCollection 2017.

10.

The miR-29 transcriptome in endocrine-sensitive and resistant breast cancer cells.

Muluhngwi P, Alizadeh-Rad N, Vittitow SL, Kalbfleisch TS, Klinge CM.

Sci Rep. 2017 Jul 12;7(1):5205. doi: 10.1038/s41598-017-05727-w.

11.

Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.

Capik SF, White BJ, Lubbers BV, Apley MD, DeDonder KD, Larson RL, Harhay GP, Chitko-McKown CG, Harhay DM, Kalbfleisch TS, Schuller G, Clawson ML.

Am J Vet Res. 2017 Mar;78(3):350-358. doi: 10.2460/ajvr.78.3.350.

PMID:
28240958
12.

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.

Clawson ML, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Kalbfleisch TS, Schuller G, Dickey AM, Harhay GP, Heaton MP, Chitko-McKown CG, Brichta-Harhay DM, Bono JL, Smith TP.

BMC Genomics. 2016 Nov 29;17(1):982.

13.

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension.

Heaton MP, Smith TP, Carnahan JK, Basnayake V, Qiu J, Simpson B, Kalbfleisch TS.

Version 2. F1000Res. 2016 Aug 16 [revised 2016 Jan 1];5:2003. eCollection 2016.

14.

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells.

Radde BN, Ivanova MM, Mai HX, Alizadeh-Rad N, Piell K, Van Hoose P, Cole MP, Muluhngwi P, Kalbfleisch TS, Rouchka EC, Hill BG, Klinge CM.

Exp Cell Res. 2016 Sep 10;347(1):222-31. doi: 10.1016/j.yexcr.2016.08.006. Epub 2016 Aug 8.

15.

Equine Arteritis Virus Uses Equine CXCL16 as an Entry Receptor.

Sarkar S, Chelvarajan L, Go YY, Cook F, Artiushin S, Mondal S, Anderson K, Eberth J, Timoney PJ, Kalbfleisch TS, Bailey E, Balasuriya UB.

J Virol. 2016 Jan 13;90(7):3366-84. doi: 10.1128/JVI.02455-15.

16.

A survey of polymorphisms detected from sequences of popular beef breeds.

Snelling WM, Bennett GL, Keele JW, Kuehn LA, McDaneld TG, Smith TP, Thallman RM, Kalbfleisch TS, Pollak EJ.

J Anim Sci. 2015 Nov;93(11):5128-43. doi: 10.2527/jas.2015-9356.

PMID:
26641033
17.

Interaction between smoking history and gene expression levels impacts survival of breast cancer patients.

Andres SA, Bickett KE, Alatoum MA, Kalbfleisch TS, Brock GN, Wittliff JL.

Breast Cancer Res Treat. 2015 Aug;152(3):545-56. doi: 10.1007/s10549-015-3507-z. Epub 2015 Jul 23.

PMID:
26202054
18.

Annotation of the Protein Coding Regions of the Equine Genome.

Hestand MS, Kalbfleisch TS, Coleman SJ, Zeng Z, Liu J, Orlando L, MacLeod JN.

PLoS One. 2015 Jun 24;10(6):e0124375. doi: 10.1371/journal.pone.0124375. eCollection 2015.

19.

SNPs for parentage testing and traceability in globally diverse breeds of sheep.

Heaton MP, Leymaster KA, Kalbfleisch TS, Kijas JW, Clarke SM, McEwan J, Maddox JF, Basnayake V, Petrik DT, Simpson B, Smith TP, Chitko-McKown CG; International Sheep Genomics Consortium.

PLoS One. 2014 Apr 16;9(4):e94851. doi: 10.1371/journal.pone.0094851. eCollection 2014.

20.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium.

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.

21.

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

Heaton MP, Clawson ML, Chitko-Mckown CG, Leymaster KA, Smith TP, Harhay GP, White SN, Herrmann-Hoesing LM, Mousel MR, Lewis GS, Kalbfleisch TS, Keen JE, Laegreid WW.

PLoS Genet. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.pgen.1002467. Epub 2012 Jan 26.

22.

Differential expression of microRNA expression in tamoxifen-sensitive MCF-7 versus tamoxifen-resistant LY2 human breast cancer cells.

Manavalan TT, Teng Y, Appana SN, Datta S, Kalbfleisch TS, Li Y, Klinge CM.

Cancer Lett. 2011 Dec 26;313(1):26-43. doi: 10.1016/j.canlet.2011.08.018. Epub 2011 Sep 10.

23.

Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies.

Florea L, Souvorov A, Kalbfleisch TS, Salzberg SL.

PLoS One. 2011;6(6):e21400. doi: 10.1371/journal.pone.0021400. Epub 2011 Jun 22.

24.

Ovine reference materials and assays for prion genetic testing.

Heaton MP, Leymaster KA, Kalbfleisch TS, Freking BA, Smith TP, Clawson ML, Laegreid WW.

BMC Vet Res. 2010 Apr 30;6:23. doi: 10.1186/1746-6148-6-23.

25.

Prevalence of the prion protein gene E211K variant in U.S. cattle.

Heaton MP, Keele JW, Harhay GP, Richt JA, Koohmaraie M, Wheeler TL, Shackelford SD, Casas E, King DA, Sonstegard TS, Van Tassell CP, Neibergs HL, Chase CC Jr, Kalbfleisch TS, Smith TP, Clawson ML, Laegreid WW.

BMC Vet Res. 2008 Jul 14;4:25. doi: 10.1186/1746-6148-4-25.

26.

Haplotype variation and linkage disequilibrium in 313 human genes.

Stephens JC, Schneider JA, Tanguay DA, Choi J, Acharya T, Stanley SE, Jiang R, Messer CJ, Chew A, Han JH, Duan J, Carr JL, Lee MS, Koshy B, Kumar AM, Zhang G, Newell WR, Windemuth A, Xu C, Kalbfleisch TS, Shaner SL, Arnold K, Schulz V, Drysdale CM, Nandabalan K, Judson RS, Ruano G, Vovis GF.

Science. 2001 Jul 20;293(5529):489-93. Epub 2001 Jul 12. Erratum in: Science 2001 Aug 10;293(5532):1048.

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