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Items: 1 to 50 of 53

1.

Correlative single-molecule localization microscopy and electron tomography reveals endosome nanoscale domains.

Franke C, Repnik U, Segeletz S, Brouilly N, Kalaidzidis Y, Verbavatz JM, Zerial M.

Traffic. 2019 Aug;20(8):601-617. doi: 10.1111/tra.12671.

PMID:
31206952
2.

Liquid-crystal organization of liver tissue.

Morales-Navarrete H, Nonaka H, Scholich A, Segovia-Miranda F, de Back W, Meyer K, Bogorad RL, Koteliansky V, Brusch L, Kalaidzidis Y, Jülicher F, Friedrich BM, Zerial M.

Elife. 2019 Jun 17;8. pii: e44860. doi: 10.7554/eLife.44860.

3.

Retrograde transport of Akt by a neuronal Rab5-APPL1 endosome.

Goto-Silva L, McShane MP, Salinas S, Kalaidzidis Y, Schiavo G, Zerial M.

Sci Rep. 2019 Feb 21;9(1):2433. doi: 10.1038/s41598-019-38637-0.

4.

A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule.

Meyer K, Ostrenko O, Bourantas G, Morales-Navarrete H, Porat-Shliom N, Segovia-Miranda F, Nonaka H, Ghaemi A, Verbavatz JM, Brusch L, Sbalzarini I, Kalaidzidis Y, Weigert R, Zerial M.

Cell Syst. 2017 Mar 22;4(3):277-290.e9. doi: 10.1016/j.cels.2017.02.008. Epub 2017 Mar 18.

5.

A Global Approach for Quantitative Super Resolution and Electron Microscopy on Cryo and Epoxy Sections Using Self-labeling Protein Tags.

Müller A, Neukam M, Ivanova A, Sönmez A, Münster C, Kretschmar S, Kalaidzidis Y, Kurth T, Verbavatz JM, Solimena M.

Sci Rep. 2017 Feb 2;7(1):23. doi: 10.1038/s41598-017-00033-x.

6.

Multiple routes of endocytic internalization of PDGFRβ contribute to PDGF-induced STAT3 signaling.

Jastrzębski K, Zdżalik-Bielecka D, Mamińska A, Kalaidzidis Y, Hellberg C, Miaczynska M.

J Cell Sci. 2017 Feb 1;130(3):577-589. doi: 10.1242/jcs.191213. Epub 2016 Dec 15.

7.

Functional properties of hepatocytes in vitro are correlated with cell polarity maintenance.

Zeigerer A, Wuttke A, Marsico G, Seifert S, Kalaidzidis Y, Zerial M.

Exp Cell Res. 2017 Jan 1;350(1):242-252. doi: 10.1016/j.yexcr.2016.11.027. Epub 2016 Dec 1.

8.

The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512.

Mziaut H, Mulligan B, Hoboth P, Otto O, Ivanova A, Herbig M, Schumann D, Hildebrandt T, Dehghany J, Sönmez A, Münster C, Meyer-Hermann M, Guck J, Kalaidzidis Y, Solimena M.

Mol Metab. 2016 Jun 10;5(8):656-668. doi: 10.1016/j.molmet.2016.05.015. eCollection 2016 Aug.

9.

An endosomal tether undergoes an entropic collapse to bring vesicles together.

Murray DH, Jahnel M, Lauer J, Avellaneda MJ, Brouilly N, Cezanne A, Morales-Navarrete H, Perini ED, Ferguson C, Lupas AN, Kalaidzidis Y, Parton RG, Grill SW, Zerial M.

Nature. 2016 Sep 1;537(7618):107-111. doi: 10.1038/nature19326. Epub 2016 Aug 24.

10.

Signal processing by the endosomal system.

Villaseñor R, Kalaidzidis Y, Zerial M.

Curr Opin Cell Biol. 2016 Apr;39:53-60. doi: 10.1016/j.ceb.2016.02.002. Epub 2016 Feb 24. Review.

11.

Forebrain-specific loss of synaptic GABAA receptors results in altered neuronal excitability and synaptic plasticity in mice.

O'Sullivan GA, Jedlicka P, Chen HX, Kalbouneh H, Ippolito A, Deller T, Nawrotzki RA, Kuhse J, Kalaidzidis YL, Kirsch J, Schwarzacher SW, Betz H.

Mol Cell Neurosci. 2016 Apr;72:101-13. doi: 10.1016/j.mcn.2016.01.010. Epub 2016 Jan 30.

PMID:
26829712
12.

A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture.

Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y.

Elife. 2015 Dec 27;4. pii: e11214. doi: 10.7554/eLife.11214.

13.

APPL endosomes are not obligatory endocytic intermediates but act as stable cargo-sorting compartments.

Kalaidzidis I, Miaczynska M, Brewińska-Olchowik M, Hupalowska A, Ferguson C, Parton RG, Kalaidzidis Y, Zerial M.

J Cell Biol. 2015 Oct 12;211(1):123-44. doi: 10.1083/jcb.201311117.

14.

Identification of siRNA delivery enhancers by a chemical library screen.

Gilleron J, Paramasivam P, Zeigerer A, Querbes W, Marsico G, Andree C, Seifert S, Amaya P, Stöter M, Koteliansky V, Waldmann H, Fitzgerald K, Kalaidzidis Y, Akinc A, Maier MA, Manoharan M, Bickle M, Zerial M.

Nucleic Acids Res. 2015 Sep 18;43(16):7984-8001. doi: 10.1093/nar/gkv762. Epub 2015 Jul 28.

15.

Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis.

Tanevski J, Todorovski L, Kalaidzidis Y, Džeroski S.

BMC Syst Biol. 2015 Jun 26;9:31. doi: 10.1186/s12918-015-0175-x.

16.

A Spatial Model of Insulin-Granule Dynamics in Pancreatic β-Cells.

Dehghany J, Hoboth P, Ivanova A, Mziaut H, Müller A, Kalaidzidis Y, Solimena M, Meyer-Hermann M.

Traffic. 2015 Aug;16(8):797-813. doi: 10.1111/tra.12286. Epub 2015 May 1.

17.

Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes.

Villaseñor R, Nonaka H, Del Conte-Zerial P, Kalaidzidis Y, Zerial M.

Elife. 2015 Feb 4;4. doi: 10.7554/eLife.06156.

18.

Aged insulin granules display reduced microtubule-dependent mobility and are disposed within actin-positive multigranular bodies.

Hoboth P, Müller A, Ivanova A, Mziaut H, Dehghany J, Sönmez A, Lachnit M, Meyer-Hermann M, Kalaidzidis Y, Solimena M.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E667-76. doi: 10.1073/pnas.1409542112. Epub 2015 Feb 2. Erratum in: Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):E2114.

19.

Molecular insights into Rab7-mediated endosomal recruitment of core retromer: deciphering the role of Vps26 and Vps35.

Priya A, Kalaidzidis IV, Kalaidzidis Y, Lambright D, Datta S.

Traffic. 2015 Jan;16(1):68-84. doi: 10.1111/tra.12237. Epub 2014 Dec 1.

20.

Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations.

Perini ED, Schaefer R, Stöter M, Kalaidzidis Y, Zerial M.

Traffic. 2014 Dec;15(12):1366-89. doi: 10.1111/tra.12232. Epub 2014 Nov 6.

21.

Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data.

Simeone A, Marsico G, Collinet C, Galvez T, Kalaidzidis Y, Zerial M, Beyer A.

PLoS Comput Biol. 2014 Sep 4;10(9):e1003801. doi: 10.1371/journal.pcbi.1003801. eCollection 2014 Sep.

22.

Development of a Kinetic Assay for Late Endosome Movement.

Esner M, Meyenhofer F, Kuhn M, Thomas M, Kalaidzidis Y, Bickle M.

J Biomol Screen. 2014 Aug;19(7):1070-8. doi: 10.1177/1087057114524278. Epub 2014 Feb 20.

PMID:
24556389
23.

Deducing the mechanism of action of compounds identified in phenotypic screens by integrating their multiparametric profiles with a reference genetic screen.

Sundaramurthy V, Barsacchi R, Chernykh M, Stöter M, Tomschke N, Bickle M, Kalaidzidis Y, Zerial M.

Nat Protoc. 2014 Feb;9(2):474-90. doi: 10.1038/nprot.2014.027. Epub 2014 Jan 30.

PMID:
24481274
24.

Objective comparison of particle tracking methods.

Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E.

Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19.

25.

Age-dependent labeling and imaging of insulin secretory granules.

Ivanova A, Kalaidzidis Y, Dirkx R, Sarov M, Gerlach M, Schroth-Diez B, Müller A, Liu Y, Andree C, Mulligan B, Münster C, Kurth T, Bickle M, Speier S, Anastassiadis K, Solimena M.

Diabetes. 2013 Nov;62(11):3687-96. doi: 10.2337/db12-1819. Epub 2013 Aug 8.

26.

Image-based analysis of lipid nanoparticle-mediated siRNA delivery, intracellular trafficking and endosomal escape.

Gilleron J, Querbes W, Zeigerer A, Borodovsky A, Marsico G, Schubert U, Manygoats K, Seifert S, Andree C, Stöter M, Epstein-Barash H, Zhang L, Koteliansky V, Fitzgerald K, Fava E, Bickle M, Kalaidzidis Y, Akinc A, Maier M, Zerial M.

Nat Biotechnol. 2013 Jul;31(7):638-46. doi: 10.1038/nbt.2612. Epub 2013 Jun 23.

PMID:
23792630
27.

Dynamin inhibitors impair endocytosis and mitogenic signaling of PDGF.

Sadowski Ł, Jastrzębski K, Kalaidzidis Y, Heldin CH, Hellberg C, Miaczynska M.

Traffic. 2013 Jun;14(6):725-36. doi: 10.1111/tra.12061. Epub 2013 Mar 12.

28.

Integration of chemical and RNAi multiparametric profiles identifies triggers of intracellular mycobacterial killing.

Sundaramurthy V, Barsacchi R, Samusik N, Marsico G, Gilleron J, Kalaidzidis I, Meyenhofer F, Bickle M, Kalaidzidis Y, Zerial M.

Cell Host Microbe. 2013 Feb 13;13(2):129-42. doi: 10.1016/j.chom.2013.01.008.

29.

A general theoretical framework to infer endosomal network dynamics from quantitative image analysis.

Foret L, Dawson JE, Villaseñor R, Collinet C, Deutsch A, Brusch L, Zerial M, Kalaidzidis Y, Jülicher F.

Curr Biol. 2012 Aug 7;22(15):1381-90. doi: 10.1016/j.cub.2012.06.021. Epub 2012 Jun 28.

30.

Rab5 is necessary for the biogenesis of the endolysosomal system in vivo.

Zeigerer A, Gilleron J, Bogorad RL, Marsico G, Nonaka H, Seifert S, Epstein-Barash H, Kuchimanchi S, Peng CG, Ruda VM, Del Conte-Zerial P, Hengstler JG, Kalaidzidis Y, Koteliansky V, Zerial M.

Nature. 2012 May 23;485(7399):465-70. doi: 10.1038/nature11133.

PMID:
22622570
31.

A segmentation method to obtain a complete geometry model of the hearing organ.

Poznyakovskiy AA, Zahnert T, Kalaidzidis Y, Lazurashvili N, Schmidt R, Hardtke HJ, Fischer B, Yarin YM.

Hear Res. 2011 Dec;282(1-2):25-34. doi: 10.1016/j.heares.2011.06.009. Epub 2011 Jul 18.

PMID:
21782915
32.

Biochemical characterization of APPL endosomes: the role of annexin A2 in APPL membrane recruitment.

Urbanska A, Sadowski L, Kalaidzidis Y, Miaczynska M.

Traffic. 2011 Sep;12(9):1227-41. doi: 10.1111/j.1600-0854.2011.01226.x. Epub 2011 Jul 3.

33.

Recruitment of APPL1 to ubiquitin-rich aggresomes in response to proteasomal impairment.

Pilecka I, Sadowski L, Kalaidzidis Y, Miaczynska M.

Exp Cell Res. 2011 May 1;317(8):1093-107. doi: 10.1016/j.yexcr.2011.02.002. Epub 2011 Feb 19.

34.

β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules.

Schubert S, Knoch KP, Ouwendijk J, Mohammed S, Bodrov Y, Jäger M, Altkrüger A, Wegbrod C, Adams ME, Kim Y, Froehner SC, Jensen ON, Kalaidzidis Y, Solimena M.

PLoS One. 2010 Sep 23;5(9):e12929. doi: 10.1371/journal.pone.0012929.

35.

Systems survey of endocytosis by multiparametric image analysis.

Collinet C, Stöter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M.

Nature. 2010 Mar 11;464(7286):243-9. doi: 10.1038/nature08779. Epub 2010 Feb 28. Erratum in: Nature. 2014 Sep 18;513(7518):444.

PMID:
20190736
36.

Regulation of epidermal growth factor receptor trafficking by lysine deacetylase HDAC6.

Deribe YL, Wild P, Chandrashaker A, Curak J, Schmidt MHH, Kalaidzidis Y, Milutinovic N, Kratchmarova I, Buerkle L, Fetchko MJ, Schmidt P, Kittanakom S, Brown KR, Jurisica I, Blagoev B, Zerial M, Stagljar I, Dikic I.

Sci Signal. 2009 Dec 22;2(102):ra84. doi: 10.1126/scisignal.2000576.

PMID:
20029029
37.

Reconstitution of Rab- and SNARE-dependent membrane fusion by synthetic endosomes.

Ohya T, Miaczynska M, Coskun U, Lommer B, Runge A, Drechsel D, Kalaidzidis Y, Zerial M.

Nature. 2009 Jun 25;459(7250):1091-7. doi: 10.1038/nature08107. Epub 2009 May 20.

PMID:
19458617
38.

Control of convergent yolk syncytial layer nuclear movement in zebrafish.

Carvalho L, Stühmer J, Bois JS, Kalaidzidis Y, Lecaudey V, Heisenberg CP.

Development. 2009 Apr;136(8):1305-15. doi: 10.1242/dev.026922. Epub 2009 Mar 11.

39.

Regulation of insulin granule turnover in pancreatic beta-cells by cleaved ICA512.

Trajkovski M, Mziaut H, Schubert S, Kalaidzidis Y, Altkrüger A, Solimena M.

J Biol Chem. 2008 Nov 28;283(48):33719-29. doi: 10.1074/jbc.M804928200. Epub 2008 Sep 29.

40.

Membrane identity and GTPase cascades regulated by toggle and cut-out switches.

Del Conte-Zerial P, Brusch L, Rink JC, Collinet C, Kalaidzidis Y, Zerial M, Deutsch A.

Mol Syst Biol. 2008;4:206. doi: 10.1038/msb.2008.45. Epub 2008 Jul 15.

41.

The creation of geometric three-dimensional models of the inner ear based on micro computer tomography data.

Poznyakovskiy AA, Zahnert T, Kalaidzidis Y, Schmidt R, Fischer B, Baumgart J, Yarin YM.

Hear Res. 2008 Sep;243(1-2):95-104. doi: 10.1016/j.heares.2008.06.008. Epub 2008 Jun 28.

PMID:
18625296
42.

siRNA screening reveals JNK2 as an evolutionary conserved regulator of triglyceride homeostasis.

Grimard V, Massier J, Richter D, Schwudke D, Kalaidzidis Y, Fava E, Hermetter A, Thiele C.

J Lipid Res. 2008 Nov;49(11):2427-40. doi: 10.1194/jlr.M800168-JLR200. Epub 2008 Jul 8.

43.

Multiple objects tracking in fluorescence microscopy.

Kalaidzidis Y.

J Math Biol. 2009 Jan;58(1-2):57-80. doi: 10.1007/s00285-008-0180-4. Epub 2008 May 14.

44.

The clathrin adaptor Gga2p is a phosphatidylinositol 4-phosphate effector at the Golgi exit.

Demmel L, Gravert M, Ercan E, Habermann B, Müller-Reichert T, Kukhtina V, Haucke V, Baust T, Sohrmann M, Kalaidzidis Y, Klose C, Beck M, Peter M, Walch-Solimena C.

Mol Biol Cell. 2008 May;19(5):1991-2002. doi: 10.1091/mbc.E06-10-0937. Epub 2008 Feb 20.

45.

Nucleocytoplasmic shuttling of the Golgi phosphatidylinositol 4-kinase Pik1 is regulated by 14-3-3 proteins and coordinates Golgi function with cell growth.

Demmel L, Beck M, Klose C, Schlaitz AL, Gloor Y, Hsu PP, Havlis J, Shevchenko A, Krause E, Kalaidzidis Y, Walch-Solimena C.

Mol Biol Cell. 2008 Mar;19(3):1046-61. doi: 10.1091/mbc.E07-02-0134. Epub 2008 Jan 2.

46.

Intracellular objects tracking.

Kalaidzidis Y.

Eur J Cell Biol. 2007 Sep;86(9):569-78. Epub 2007 Jul 23. Review.

PMID:
17646017
47.

Kinetics of morphogen gradient formation.

Kicheva A, Pantazis P, Bollenbach T, Kalaidzidis Y, Bittig T, Jülicher F, González-Gaitán M.

Science. 2007 Jan 26;315(5811):521-5.

48.

The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends.

Helenius J, Brouhard G, Kalaidzidis Y, Diez S, Howard J.

Nature. 2006 May 4;441(7089):115-9.

PMID:
16672973
49.

Rab conversion as a mechanism of progression from early to late endosomes.

Rink J, Ghigo E, Kalaidzidis Y, Zerial M.

Cell. 2005 Sep 9;122(5):735-49.

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